{"id":"https://openalex.org/W2805758713","doi":"https://doi.org/10.1186/s13321-018-0310-y","title":"Implicit-descriptor ligand-based virtual screening by means of collaborative filtering","display_name":"Implicit-descriptor ligand-based virtual screening by means of collaborative filtering","publication_year":2018,"publication_date":"2018-11-22","ids":{"openalex":"https://openalex.org/W2805758713","doi":"https://doi.org/10.1186/s13321-018-0310-y","mag":"2805758713","pmid":"https://pubmed.ncbi.nlm.nih.gov/30467684"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-018-0310-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-018-0310-y","pdf_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/s13321-018-0310-y","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/s13321-018-0310-y","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089291074","display_name":"Raghuram Srinivas","orcid":"https://orcid.org/0000-0002-3854-6063"},"institutions":[{"id":"https://openalex.org/I178169726","display_name":"Southern Methodist University","ror":"https://ror.org/042tdr378","country_code":"US","type":"education","lineage":["https://openalex.org/I178169726"]},{"id":"https://openalex.org/I4210094173","display_name":"SMK University of Applied Social Sciences","ror":"https://ror.org/00g11es29","country_code":"LT","type":"education","lineage":["https://openalex.org/I4210094173"]}],"countries":["LT","US"],"is_corresponding":true,"raw_author_name":"Raghuram Srinivas","raw_affiliation_strings":["DataScience@SMU, Dallas, 75205, TX, USA. rsrinivas@smu.edu","Department of Computer Science and Engineering, Bobby B. Lyle School of Engineering, Southern Methodist University, 3145 Dyer Street, Dallas, TX, 75205, USA. rsrinivas@smu.edu","Department of Computer Science and Engineering, Bobby B. Lyle School of Engineering, Southern Methodist University, 3145 Dyer Street, Dallas, TX, 75205, USA"],"affiliations":[{"raw_affiliation_string":"DataScience@SMU, Dallas, 75205, TX, USA. rsrinivas@smu.edu","institution_ids":["https://openalex.org/I4210094173","https://openalex.org/I178169726"]},{"raw_affiliation_string":"Department of Computer Science and Engineering, Bobby B. Lyle School of Engineering, Southern Methodist University, 3145 Dyer Street, Dallas, TX, 75205, USA. rsrinivas@smu.edu","institution_ids":["https://openalex.org/I178169726"]},{"raw_affiliation_string":"Department of Computer Science and Engineering, Bobby B. Lyle School of Engineering, Southern Methodist University, 3145 Dyer Street, Dallas, TX, 75205, USA","institution_ids":["https://openalex.org/I178169726"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074283689","display_name":"Pavel V. Klimovich","orcid":null},"institutions":[{"id":"https://openalex.org/I178169726","display_name":"Southern Methodist University","ror":"https://ror.org/042tdr378","country_code":"US","type":"education","lineage":["https://openalex.org/I178169726"]},{"id":"https://openalex.org/I2800240351","display_name":"Mountain View College","ror":"https://ror.org/04fh8an03","country_code":"US","type":"education","lineage":["https://openalex.org/I1291072267","https://openalex.org/I2800240351"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Pavel V. Klimovich","raw_affiliation_strings":["Department of Computer Science and Engineering, Bobby B. Lyle School of Engineering, Southern Methodist University, 3145 Dyer Street, Dallas, TX, 75205, USA","The Dedman College Interdisciplinary Institute, 3225 Daniel Avenue, Dallas, TX, 75205, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Bobby B. Lyle School of Engineering, Southern Methodist University, 3145 Dyer Street, Dallas, TX, 75205, USA","institution_ids":["https://openalex.org/I178169726"]},{"raw_affiliation_string":"The Dedman College Interdisciplinary Institute, 3225 Daniel Avenue, Dallas, TX, 75205, USA","institution_ids":["https://openalex.org/I2800240351"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5023773515","display_name":"Eric C. Larson","orcid":"https://orcid.org/0000-0001-6040-868X"},"institutions":[{"id":"https://openalex.org/I178169726","display_name":"Southern Methodist University","ror":"https://ror.org/042tdr378","country_code":"US","type":"education","lineage":["https://openalex.org/I178169726"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eric C. Larson","raw_affiliation_strings":["Department of Computer Science and Engineering, Bobby B. Lyle School of Engineering, Southern Methodist University, 3145 Dyer Street, Dallas, TX, 75205, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Bobby B. Lyle School of Engineering, Southern Methodist University, 3145 Dyer Street, Dallas, TX, 75205, USA","institution_ids":["https://openalex.org/I178169726"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5089291074"],"corresponding_institution_ids":["https://openalex.org/I178169726","https://openalex.org/I4210094173"],"apc_list":{"value":1290,"currency":"GBP","value_usd":1582},"apc_paid":{"value":1290,"currency":"GBP","value_usd":1582},"fwci":1.7095,"has_fulltext":true,"cited_by_count":21,"citation_normalized_percentile":{"value":0.86073094,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"10","issue":"1","first_page":"56","last_page":"56"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10908","display_name":"Analytical Chemistry and Chromatography","score":0.9851999878883362,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8247198462486267},{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.7415391206741333},{"id":"https://openalex.org/keywords/fingerprint","display_name":"Fingerprint (computing)","score":0.6903538107872009},{"id":"https://openalex.org/keywords/metric","display_name":"Metric (unit)","score":0.6358623504638672},{"id":"https://openalex.org/keywords/vectorization","display_name":"Vectorization (mathematics)","score":0.5803455114364624},{"id":"https://openalex.org/keywords/collaborative-filtering","display_name":"Collaborative filtering","score":0.5714837908744812},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.5607972145080566},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.5134299993515015},{"id":"https://openalex.org/keywords/preprocessor","display_name":"Preprocessor","score":0.5101661682128906},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4908047616481781},{"id":"https://openalex.org/keywords/cheminformatics","display_name":"Cheminformatics","score":0.4782389998435974},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.45582282543182373},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.409287691116333},{"id":"https://openalex.org/keywords/recommender-system","display_name":"Recommender system","score":0.25468093156814575},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.13611644506454468},{"id":"https://openalex.org/keywords/pharmacophore","display_name":"Pharmacophore","score":0.13606798648834229},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.09114229679107666}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8247198462486267},{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.7415391206741333},{"id":"https://openalex.org/C2777826928","wikidata":"https://www.wikidata.org/wiki/Q3745713","display_name":"Fingerprint (computing)","level":2,"score":0.6903538107872009},{"id":"https://openalex.org/C176217482","wikidata":"https://www.wikidata.org/wiki/Q860554","display_name":"Metric (unit)","level":2,"score":0.6358623504638672},{"id":"https://openalex.org/C41681595","wikidata":"https://www.wikidata.org/wiki/Q7917855","display_name":"Vectorization (mathematics)","level":2,"score":0.5803455114364624},{"id":"https://openalex.org/C21569690","wikidata":"https://www.wikidata.org/wiki/Q94702","display_name":"Collaborative filtering","level":3,"score":0.5714837908744812},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.5607972145080566},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.5134299993515015},{"id":"https://openalex.org/C34736171","wikidata":"https://www.wikidata.org/wiki/Q918333","display_name":"Preprocessor","level":2,"score":0.5101661682128906},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4908047616481781},{"id":"https://openalex.org/C68762167","wikidata":"https://www.wikidata.org/wiki/Q910164","display_name":"Cheminformatics","level":2,"score":0.4782389998435974},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.45582282543182373},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.409287691116333},{"id":"https://openalex.org/C557471498","wikidata":"https://www.wikidata.org/wiki/Q554950","display_name":"Recommender system","level":2,"score":0.25468093156814575},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.13611644506454468},{"id":"https://openalex.org/C56173144","wikidata":"https://www.wikidata.org/wiki/Q1539893","display_name":"Pharmacophore","level":2,"score":0.13606798648834229},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.09114229679107666},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/s13321-018-0310-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-018-0310-y","pdf_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/s13321-018-0310-y","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:30467684","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30467684","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:c55a09b9aa054df4863b9a697c34514a","is_oa":true,"landing_page_url":"https://doaj.org/article/c55a09b9aa054df4863b9a697c34514a","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Cheminformatics, Vol 10, Iss 1, Pp 1-20 (2018)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:6755561","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6755561","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Cheminform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13321-018-0310-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-018-0310-y","pdf_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/s13321-018-0310-y","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2805758713.pdf","grobid_xml":"https://content.openalex.org/works/W2805758713.grobid-xml"},"referenced_works_count":71,"referenced_works":["https://openalex.org/W114517082","https://openalex.org/W1488838306","https://openalex.org/W1560585634","https://openalex.org/W1655274992","https://openalex.org/W1738019091","https://openalex.org/W1775000479","https://openalex.org/W1831028724","https://openalex.org/W1896160955","https://openalex.org/W1966553486","https://openalex.org/W1974880836","https://openalex.org/W1982131304","https://openalex.org/W1988037271","https://openalex.org/W1988195734","https://openalex.org/W1998441650","https://openalex.org/W1999798000","https://openalex.org/W2001515828","https://openalex.org/W2002503643","https://openalex.org/W2003752196","https://openalex.org/W2010700988","https://openalex.org/W2014276094","https://openalex.org/W2016064634","https://openalex.org/W2016979469","https://openalex.org/W2021444228","https://openalex.org/W2021748110","https://openalex.org/W2025580327","https://openalex.org/W2025829414","https://openalex.org/W2032273024","https://openalex.org/W2042110087","https://openalex.org/W2047509756","https://openalex.org/W2050081822","https://openalex.org/W2052460962","https://openalex.org/W2054141820","https://openalex.org/W2064576005","https://openalex.org/W2078841894","https://openalex.org/W2081118632","https://openalex.org/W2081837827","https://openalex.org/W2096864392","https://openalex.org/W2101234009","https://openalex.org/W2112912103","https://openalex.org/W2119512897","https://openalex.org/W2121776789","https://openalex.org/W2125781388","https://openalex.org/W2151697120","https://openalex.org/W2155106456","https://openalex.org/W2165949563","https://openalex.org/W2174991771","https://openalex.org/W2187089797","https://openalex.org/W2200017991","https://openalex.org/W2404472757","https://openalex.org/W2407586185","https://openalex.org/W2412446857","https://openalex.org/W2412746331","https://openalex.org/W2472085920","https://openalex.org/W2513486311","https://openalex.org/W2521868064","https://openalex.org/W2539902382","https://openalex.org/W2546841151","https://openalex.org/W2556014018","https://openalex.org/W2556851635","https://openalex.org/W2558999090","https://openalex.org/W2566398673","https://openalex.org/W2585438647","https://openalex.org/W2588284375","https://openalex.org/W2591883888","https://openalex.org/W2594183968","https://openalex.org/W2597011015","https://openalex.org/W2736101782","https://openalex.org/W2739002345","https://openalex.org/W2740946158","https://openalex.org/W2894573731","https://openalex.org/W4249267926"],"related_works":["https://openalex.org/W1573015311","https://openalex.org/W1570419641","https://openalex.org/W4362464865","https://openalex.org/W2098840560","https://openalex.org/W4302604134","https://openalex.org/W2768880727","https://openalex.org/W2113146994","https://openalex.org/W2073081213","https://openalex.org/W3048453687","https://openalex.org/W2621548818"],"abstract_inverted_index":{"Current":[0],"ligand-based":[1],"machine":[2,131],"learning":[3,132],"methods":[4,33,60,82,127,140],"in":[5,24,92],"virtual":[6],"screening":[7],"rely":[8],"heavily":[9],"on":[10,77],"molecular":[11,39],"fingerprinting":[12],"for":[13,150],"preprocessing,":[14],"i.e.,":[15],"explicit":[16,65],"description":[17],"of":[18,111,119,138],"ligands'":[19],"structural":[20],"and":[21,45,58,134,147],"physicochemical":[22],"properties":[23],"a":[25,42],"vectorized":[26],"form.":[27],"Of":[28],"particular":[29,43],"importance":[30],"to":[31,37,144],"current":[32],"are":[34,83,141],"the":[35,108,112,116,120,135],"extent":[36],"which":[38,106],"fingerprints":[40],"describe":[41],"ligand":[44],"what":[46],"metric":[47],"sufficiently":[48],"captures":[49],"similarity":[50,104],"among":[51],"ligands.":[52,153],"In":[53],"this":[54],"work,":[55],"we":[56],"propose":[57],"evaluate":[59],"that":[61,125],"do":[62],"not":[63,100],"require":[64,101],"feature":[66],"vectorization":[67],"through":[68],"fingerprinting,":[69],"but,":[70],"instead,":[71],"provide":[72],"implicit":[73,96,126,139],"descriptors":[74],"based":[75,84],"only":[76],"other":[78],"known":[79,87],"assays.":[80],"Our":[81,95],"upon":[85],"well":[86],"collaborative":[88],"filtering":[89],"algorithms":[90],"used":[91],"recommendation":[93],"systems.":[94],"descriptor":[97],"method":[98,109],"does":[99],"any":[102],"fingerprint":[103,121],"search,":[105],"makes":[107],"free":[110],"bias":[113],"arising":[114],"from":[115],"empirical":[117],"nature":[118],"models.":[122],"We":[123],"show":[124],"significantly":[128],"outperform":[129],"traditional":[130],"methods,":[133],"main":[136],"strengths":[137],"their":[142],"resilience":[143],"target-ligand":[145],"sparsity":[146],"high":[148],"potential":[149],"spotting":[151],"promiscuous":[152]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":7},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":2}],"updated_date":"2026-03-27T14:29:43.386196","created_date":"2025-10-10T00:00:00"}
