{"id":"https://openalex.org/W2798936682","doi":"https://doi.org/10.1186/s13321-018-0271-1","title":"A confidence predictor for logD using conformal regression and a support-vector machine","display_name":"A confidence predictor for logD using conformal regression and a support-vector machine","publication_year":2018,"publication_date":"2018-04-03","ids":{"openalex":"https://openalex.org/W2798936682","doi":"https://doi.org/10.1186/s13321-018-0271-1","mag":"2798936682","pmid":"https://pubmed.ncbi.nlm.nih.gov/29616425"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-018-0271-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-018-0271-1","pdf_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/s13321-018-0271-1","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/s13321-018-0271-1","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5064016167","display_name":"Maris Lapins","orcid":"https://orcid.org/0000-0002-0122-6680"},"institutions":[{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Maris Lapins","raw_affiliation_strings":["Department of Pharmaceutical Biosciences, Uppsala University, Box 591, 751 24, Uppsala, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pharmaceutical Biosciences, Uppsala University, Box 591, 751 24, Uppsala, Sweden","institution_ids":["https://openalex.org/I123387679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081393883","display_name":"Staffan Arvidsson","orcid":"https://orcid.org/0000-0001-6709-7116"},"institutions":[{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Staffan Arvidsson","raw_affiliation_strings":["Department of Pharmaceutical Biosciences, Uppsala University, Box 591, 751 24, Uppsala, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pharmaceutical Biosciences, Uppsala University, Box 591, 751 24, Uppsala, Sweden","institution_ids":["https://openalex.org/I123387679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076964957","display_name":"Samuel Lampa","orcid":"https://orcid.org/0000-0001-6740-9212"},"institutions":[{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Samuel Lampa","raw_affiliation_strings":["Department of Pharmaceutical Biosciences, Uppsala University, Box 591, 751 24, Uppsala, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pharmaceutical Biosciences, Uppsala University, Box 591, 751 24, Uppsala, Sweden","institution_ids":["https://openalex.org/I123387679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025994042","display_name":"Arvid Berg","orcid":"https://orcid.org/0000-0001-6689-6901"},"institutions":[{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Arvid Berg","raw_affiliation_strings":["Department of Pharmaceutical Biosciences, Uppsala University, Box 591, 751 24, Uppsala, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pharmaceutical Biosciences, Uppsala University, Box 591, 751 24, Uppsala, Sweden","institution_ids":["https://openalex.org/I123387679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091859168","display_name":"Wesley Schaal","orcid":"https://orcid.org/0000-0001-6770-0878"},"institutions":[{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Wesley Schaal","raw_affiliation_strings":["Department of Pharmaceutical Biosciences, Uppsala University, Box 591, 751 24, Uppsala, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pharmaceutical Biosciences, Uppsala University, Box 591, 751 24, Uppsala, Sweden","institution_ids":["https://openalex.org/I123387679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027509528","display_name":"Jonathan Alvarsson","orcid":"https://orcid.org/0000-0002-8682-7206"},"institutions":[{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Jonathan Alvarsson","raw_affiliation_strings":["Department of Pharmaceutical Biosciences, Uppsala University, Box 591, 751 24, Uppsala, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pharmaceutical Biosciences, Uppsala University, Box 591, 751 24, Uppsala, Sweden","institution_ids":["https://openalex.org/I123387679"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046663348","display_name":"Ola Spjuth","orcid":"https://orcid.org/0000-0002-8083-2864"},"institutions":[{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Ola Spjuth","raw_affiliation_strings":["Department of Pharmaceutical Biosciences, Uppsala University, Box 591, 751 24, Uppsala, Sweden. ola.spjuth@farmbio.uu.se","Department of Pharmaceutical Biosciences, Uppsala University, Box 591, 751 24, Uppsala, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pharmaceutical Biosciences, Uppsala University, Box 591, 751 24, Uppsala, Sweden. ola.spjuth@farmbio.uu.se","institution_ids":["https://openalex.org/I123387679"]},{"raw_affiliation_string":"Department of Pharmaceutical Biosciences, Uppsala University, Box 591, 751 24, Uppsala, Sweden","institution_ids":["https://openalex.org/I123387679"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1290,"currency":"GBP","value_usd":1582},"apc_paid":{"value":1304,"currency":"EUR","value_usd":1406},"fwci":5.1479,"has_fulltext":true,"cited_by_count":61,"citation_normalized_percentile":{"value":0.96191941,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"10","issue":"1","first_page":"17","last_page":"17"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10908","display_name":"Analytical Chemistry and Chromatography","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11460","display_name":"Analytical Methods in Pharmaceuticals","score":0.9868000149726868,"subfield":{"id":"https://openalex.org/subfields/1602","display_name":"Analytical Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/chembl","display_name":"chEMBL","score":0.9402192234992981},{"id":"https://openalex.org/keywords/pubchem","display_name":"PubChem","score":0.7792462110519409},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.582528829574585},{"id":"https://openalex.org/keywords/confidence-interval","display_name":"Confidence interval","score":0.5581303834915161},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.544265866279602},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4684830904006958},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.3026118278503418},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.2970820665359497},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.25154590606689453},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.18225547671318054},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.15720227360725403},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.14357668161392212}],"concepts":[{"id":"https://openalex.org/C63222358","wikidata":"https://www.wikidata.org/wiki/Q6120337","display_name":"chEMBL","level":3,"score":0.9402192234992981},{"id":"https://openalex.org/C158180186","wikidata":"https://www.wikidata.org/wiki/Q278487","display_name":"PubChem","level":2,"score":0.7792462110519409},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.582528829574585},{"id":"https://openalex.org/C44249647","wikidata":"https://www.wikidata.org/wiki/Q208498","display_name":"Confidence interval","level":2,"score":0.5581303834915161},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.544265866279602},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4684830904006958},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.3026118278503418},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.2970820665359497},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.25154590606689453},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.18225547671318054},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.15720227360725403},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.14357668161392212},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1186/s13321-018-0271-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-018-0271-1","pdf_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/s13321-018-0271-1","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:29616425","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29616425","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:DiVA.org:uu-347779","is_oa":true,"landing_page_url":"http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-347779","pdf_url":null,"source":{"id":"https://openalex.org/S4306401559","display_name":"KTH Publication Database DiVA (KTH Royal Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article in journal"},{"id":"pmh:oai:doaj.org/article:1d8de455ff4248958e66beecd6f355bf","is_oa":true,"landing_page_url":"https://doaj.org/article/1d8de455ff4248958e66beecd6f355bf","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Cheminformatics, Vol 10, Iss 1, Pp 1-10 (2018)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:5882484","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5882484","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Cheminform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13321-018-0271-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-018-0271-1","pdf_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/s13321-018-0271-1","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals","score":0.44999998807907104}],"awards":[{"id":"https://openalex.org/G7230862021","display_name":null,"funder_award_id":"731075","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"},{"id":"https://openalex.org/G7853248445","display_name":null,"funder_award_id":"731075","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320332999","display_name":"Horizon 2020 Framework Programme","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2798936682.pdf","grobid_xml":"https://content.openalex.org/works/W2798936682.grobid-xml"},"referenced_works_count":39,"referenced_works":["https://openalex.org/W51213517","https://openalex.org/W1553101044","https://openalex.org/W1852306145","https://openalex.org/W1983515051","https://openalex.org/W1991590537","https://openalex.org/W1994249991","https://openalex.org/W2009562403","https://openalex.org/W2009842403","https://openalex.org/W2010546252","https://openalex.org/W2013667086","https://openalex.org/W2016575780","https://openalex.org/W2020446438","https://openalex.org/W2022603596","https://openalex.org/W2024088210","https://openalex.org/W2038094422","https://openalex.org/W2040066247","https://openalex.org/W2042721486","https://openalex.org/W2051503575","https://openalex.org/W2060062036","https://openalex.org/W2062458432","https://openalex.org/W2086702971","https://openalex.org/W2090996511","https://openalex.org/W2097559461","https://openalex.org/W2104709519","https://openalex.org/W2118585731","https://openalex.org/W2120869341","https://openalex.org/W2144427809","https://openalex.org/W2148103576","https://openalex.org/W2148603752","https://openalex.org/W2177317049","https://openalex.org/W2213735563","https://openalex.org/W2338221130","https://openalex.org/W2460403402","https://openalex.org/W2493157521","https://openalex.org/W2558999090","https://openalex.org/W2600880660","https://openalex.org/W2622236128","https://openalex.org/W2798936682","https://openalex.org/W4393656355"],"related_works":["https://openalex.org/W4249248884","https://openalex.org/W4240782442","https://openalex.org/W2920928233","https://openalex.org/W3201640553","https://openalex.org/W4393469466","https://openalex.org/W4386453949","https://openalex.org/W4386823632","https://openalex.org/W4393507696","https://openalex.org/W4393880169","https://openalex.org/W4393718879"],"abstract_inverted_index":{"Lipophilicity":[0],"is":[1,107],"a":[2,49,53,64,72,117,121],"major":[3],"determinant":[4],"of":[5,11,75,89],"ADMET":[6],"properties":[7],"and":[8,46,78,97,124,144],"overall":[9],"suitability":[10],"drug":[12,29],"candidates.":[13],"We":[14],"have":[15],"developed":[16],"large-scale":[17],"models":[18,43],"to":[19],"predict":[20],"water\u2013octanol":[21],"distribution":[22],"coefficient":[23],"(logD)":[24],"for":[25,35,134,142],"chemical":[26],"compounds,":[27],"aiding":[28],"discovery":[30],"projects.":[31],"Using":[32],"ACD/logD":[33],"data":[34],"1.6":[36],"million":[37],"compounds":[38],"from":[39],"the":[40,80],"ChEMBL":[41],"database,":[42],"are":[44],"created":[45],"evaluated":[47],"by":[48],"support-vector":[50],"machine":[51],"with":[52,79,120],"linear":[54],"kernel":[55],"using":[56],"conformal":[57],"prediction":[58,61,87],"methodology,":[59],"outputting":[60],"intervals":[62],"at":[63,94,102,130],"specified":[65],"confidence":[66,96,132],"level.":[67],"The":[68,105],"resulting":[69],"model":[70,106],"shows":[71],"predictive":[73,128],"ability":[74],"$$\\hbox":[76],"{Q}^{2}=0.973$$":[77],"best":[81],"performing":[82],"nonconformity":[83],"measure":[84],"having":[85],"median":[86],"interval":[88],"$$\\pm":[90,98],"~0.39$$":[91],"log":[92,100],"units":[93,101],"80%":[95],"~0.60$$":[99],"90%":[103,131],"confidence.":[104],"available":[108],"as":[109,145],"an":[110,114,146],"online":[111],"service":[112],"via":[113],"OpenAPI":[115],"interface,":[116],"web":[118],"page":[119],"molecular":[122],"editor,":[123],"we":[125],"also":[126],"publish":[127],"values":[129],"level":[133],"91":[135],"M":[136],"PubChem":[137],"structures":[138],"in":[139],"RDF":[140],"format":[141],"download":[143],"URI":[147],"resolver":[148],"service.":[149]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":11},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":9},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":4}],"updated_date":"2026-06-14T07:44:22.658603","created_date":"2025-10-10T00:00:00"}
