{"id":"https://openalex.org/W2794498378","doi":"https://doi.org/10.1186/s13321-018-0270-2","title":"PyBioMed: a python library for various molecular representations of chemicals, proteins and DNAs and their interactions","display_name":"PyBioMed: a python library for various molecular representations of chemicals, proteins and DNAs and their interactions","publication_year":2018,"publication_date":"2018-03-20","ids":{"openalex":"https://openalex.org/W2794498378","doi":"https://doi.org/10.1186/s13321-018-0270-2","mag":"2794498378","pmid":"https://pubmed.ncbi.nlm.nih.gov/29556758"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-018-0270-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-018-0270-2","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-018-0270-2","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-018-0270-2","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5004795100","display_name":"Jie Dong","orcid":"https://orcid.org/0000-0002-3324-9000"},"institutions":[{"id":"https://openalex.org/I119273862","display_name":"Central South University of Forestry and Technology","ror":"https://ror.org/02czw2k81","country_code":"CN","type":"education","lineage":["https://openalex.org/I119273862"]},{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jie Dong","raw_affiliation_strings":["College of Food Science and Engineering, National Engineering Laboratory for Deep Processing of Rice and Byproducts, Central South University of Forestry and Technology, Changsha, China","Xiangya School of Pharmaceutical Sciences, Central South University, No. 172, Tongzipo Road, Yuelu District, Changsha, People's Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Food Science and Engineering, National Engineering Laboratory for Deep Processing of Rice and Byproducts, Central South University of Forestry and Technology, Changsha, China","institution_ids":["https://openalex.org/I119273862","https://openalex.org/I139660479"]},{"raw_affiliation_string":"Xiangya School of Pharmaceutical Sciences, Central South University, No. 172, Tongzipo Road, Yuelu District, Changsha, People's Republic of China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057679513","display_name":"Zhi\u2010Jiang Yao","orcid":null},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhi-Jiang Yao","raw_affiliation_strings":["Xiangya School of Pharmaceutical Sciences, Central South University, No. 172, Tongzipo Road, Yuelu District, Changsha, People's Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Xiangya School of Pharmaceutical Sciences, Central South University, No. 172, Tongzipo Road, Yuelu District, Changsha, People's Republic of China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100351875","display_name":"Lin Zhang","orcid":"https://orcid.org/0000-0002-7404-5231"},"institutions":[{"id":"https://openalex.org/I119273862","display_name":"Central South University of Forestry and Technology","ror":"https://ror.org/02czw2k81","country_code":"CN","type":"education","lineage":["https://openalex.org/I119273862"]},{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lin Zhang","raw_affiliation_strings":["College of Food Science and Engineering, National Engineering Laboratory for Deep Processing of Rice and Byproducts, Central South University of Forestry and Technology, Changsha, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Food Science and Engineering, National Engineering Laboratory for Deep Processing of Rice and Byproducts, Central South University of Forestry and Technology, Changsha, China","institution_ids":["https://openalex.org/I119273862","https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002229333","display_name":"Feijun Luo","orcid":"https://orcid.org/0000-0001-7489-544X"},"institutions":[{"id":"https://openalex.org/I119273862","display_name":"Central South University of Forestry and Technology","ror":"https://ror.org/02czw2k81","country_code":"CN","type":"education","lineage":["https://openalex.org/I119273862"]},{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Feijun Luo","raw_affiliation_strings":["College of Food Science and Engineering, National Engineering Laboratory for Deep Processing of Rice and Byproducts, Central South University of Forestry and Technology, Changsha, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Food Science and Engineering, National Engineering Laboratory for Deep Processing of Rice and Byproducts, Central South University of Forestry and Technology, Changsha, China","institution_ids":["https://openalex.org/I119273862","https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057950514","display_name":"Qinlu Lin","orcid":"https://orcid.org/0000-0003-2043-4220"},"institutions":[{"id":"https://openalex.org/I119273862","display_name":"Central South University of Forestry and Technology","ror":"https://ror.org/02czw2k81","country_code":"CN","type":"education","lineage":["https://openalex.org/I119273862"]},{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qinlu Lin","raw_affiliation_strings":["College of Food Science and Engineering, National Engineering Laboratory for Deep Processing of Rice and Byproducts, Central South University of Forestry and Technology, Changsha, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Food Science and Engineering, National Engineering Laboratory for Deep Processing of Rice and Byproducts, Central South University of Forestry and Technology, Changsha, China","institution_ids":["https://openalex.org/I119273862","https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076594495","display_name":"Aiping L\u00fc","orcid":"https://orcid.org/0000-0002-2303-0494"},"institutions":[{"id":"https://openalex.org/I141568987","display_name":"Hong Kong Baptist University","ror":"https://ror.org/0145fw131","country_code":"HK","type":"education","lineage":["https://openalex.org/I141568987"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Ai-Ping Lu","raw_affiliation_strings":["Institute for Advancing Translational Medicine in Bone and Joint Diseases, School of Chinese Medicine, Hong Kong Baptist University, Hong Kong SAR, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Advancing Translational Medicine in Bone and Joint Diseases, School of Chinese Medicine, Hong Kong Baptist University, Hong Kong SAR, China","institution_ids":["https://openalex.org/I141568987"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000755272","display_name":"Alex F. Chen","orcid":"https://orcid.org/0000-0002-9792-0916"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]},{"id":"https://openalex.org/I4210156904","display_name":"Third Xiangya Hospital","ror":"https://ror.org/05akvb491","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210156904"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Alex F. Chen","raw_affiliation_strings":["Center for Vascular Disease and Translational Medicine, Third Xiangya Hospital, Central South University, Changsha, People's Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Vascular Disease and Translational Medicine, Third Xiangya Hospital, Central South University, Changsha, People's Republic of China","institution_ids":["https://openalex.org/I4210156904","https://openalex.org/I139660479"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083809384","display_name":"Dongsheng Cao","orcid":"https://orcid.org/0000-0003-3604-3785"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]},{"id":"https://openalex.org/I141568987","display_name":"Hong Kong Baptist University","ror":"https://ror.org/0145fw131","country_code":"HK","type":"education","lineage":["https://openalex.org/I141568987"]},{"id":"https://openalex.org/I4210156904","display_name":"Third Xiangya Hospital","ror":"https://ror.org/05akvb491","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210156904"]}],"countries":["CN","HK"],"is_corresponding":true,"raw_author_name":"Dong-Sheng Cao","raw_affiliation_strings":["Center for Vascular Disease and Translational Medicine, Third Xiangya Hospital, Central South University, Changsha, People's Republic of China. oriental-cds@163.com","Institute for Advancing Translational Medicine in Bone and Joint Diseases, School of Chinese Medicine, Hong Kong Baptist University, Hong Kong SAR, China. oriental-cds@163.com","Xiangya School of Pharmaceutical Sciences, Central South University, No. 172, Tongzipo Road, Yuelu District, Changsha, People's Republic of China. oriental-cds@163.com","Institute for Advancing Translational Medicine in Bone and Joint Diseases, School of Chinese Medicine, Hong Kong Baptist University, Hong Kong SAR, China"],"raw_orcid":"https://orcid.org/0000-0003-3604-3785","affiliations":[{"raw_affiliation_string":"Center for Vascular Disease and Translational Medicine, Third Xiangya Hospital, Central South University, Changsha, People's Republic of China. oriental-cds@163.com","institution_ids":["https://openalex.org/I4210156904","https://openalex.org/I139660479"]},{"raw_affiliation_string":"Institute for Advancing Translational Medicine in Bone and Joint Diseases, School of Chinese Medicine, Hong Kong Baptist University, Hong Kong SAR, China. oriental-cds@163.com","institution_ids":["https://openalex.org/I141568987"]},{"raw_affiliation_string":"Xiangya School of Pharmaceutical Sciences, Central South University, No. 172, Tongzipo Road, Yuelu District, Changsha, People's Republic of China. oriental-cds@163.com","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"Institute for Advancing Translational Medicine in Bone and Joint Diseases, School of Chinese Medicine, Hong Kong Baptist University, Hong Kong SAR, China","institution_ids":["https://openalex.org/I141568987"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5083809384"],"corresponding_institution_ids":["https://openalex.org/I139660479","https://openalex.org/I141568987","https://openalex.org/I4210156904"],"apc_list":{"value":1290,"currency":"GBP","value_usd":1582},"apc_paid":{"value":1290,"currency":"GBP","value_usd":1582},"fwci":10.6016,"has_fulltext":true,"cited_by_count":168,"citation_normalized_percentile":{"value":0.98706048,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"10","issue":"1","first_page":"16","last_page":"16"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.7114999890327454,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.7114999890327454,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.04800000041723251,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.03240000084042549,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.7357239723205566},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6871252059936523},{"id":"https://openalex.org/keywords/cheminformatics","display_name":"Cheminformatics","score":0.473811537027359},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.4355488717556},{"id":"https://openalex.org/keywords/chemical-space","display_name":"Chemical space","score":0.42776787281036377},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.4252972900867462},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4162740111351013},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.40057575702667236},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.32287782430648804},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.28798168897628784},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.252235472202301},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.23695048689842224},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.12586554884910583},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1213921308517456},{"id":"https://openalex.org/keywords/computational-chemistry","display_name":"Computational chemistry","score":0.10107186436653137}],"concepts":[{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.7357239723205566},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6871252059936523},{"id":"https://openalex.org/C68762167","wikidata":"https://www.wikidata.org/wiki/Q910164","display_name":"Cheminformatics","level":2,"score":0.473811537027359},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.4355488717556},{"id":"https://openalex.org/C99726746","wikidata":"https://www.wikidata.org/wiki/Q906396","display_name":"Chemical space","level":3,"score":0.42776787281036377},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.4252972900867462},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4162740111351013},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.40057575702667236},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.32287782430648804},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.28798168897628784},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.252235472202301},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.23695048689842224},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.12586554884910583},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1213921308517456},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.10107186436653137}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/s13321-018-0270-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-018-0270-2","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-018-0270-2","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:29556758","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29556758","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:0a77870235dd4982a5655bdd78a5b5d1","is_oa":true,"landing_page_url":"https://doaj.org/article/0a77870235dd4982a5655bdd78a5b5d1","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Cheminformatics, Vol 10, Iss 1, Pp 1-11 (2018)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:5861255","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5861255","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Cheminform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13321-018-0270-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-018-0270-2","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-018-0270-2","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.4699999988079071,"id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G2777322710","display_name":null,"funder_award_id":"81402853","funder_id":"https://openalex.org/F4320335439","funder_display_name":"Postdoctoral Science Foundation of Central South University"},{"id":"https://openalex.org/G3418084994","display_name":null,"funder_award_id":"2017TP1021","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5253432549","display_name":null,"funder_award_id":"81402853","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5541477926","display_name":null,"funder_award_id":"81501619","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G688731667","display_name":null,"funder_award_id":"2017TP1021","funder_id":"https://openalex.org/F4320321514","funder_display_name":"Central South University"},{"id":"https://openalex.org/G7097534527","display_name":null,"funder_award_id":"No. 81402853","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7819182542","display_name":null,"funder_award_id":"2014M562142","funder_id":"https://openalex.org/F4320335439","funder_display_name":"Postdoctoral Science Foundation of Central South University"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321514","display_name":"Central South University","ror":"https://ror.org/00f1zfq44"},{"id":"https://openalex.org/F4320335439","display_name":"Postdoctoral Science Foundation of Central South University","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2794498378.pdf","grobid_xml":"https://content.openalex.org/works/W2794498378.grobid-xml"},"referenced_works_count":58,"referenced_works":["https://openalex.org/W107985703","https://openalex.org/W1495461900","https://openalex.org/W1496257230","https://openalex.org/W1545231783","https://openalex.org/W1828735316","https://openalex.org/W1955951250","https://openalex.org/W1970275325","https://openalex.org/W1973925672","https://openalex.org/W1982267716","https://openalex.org/W1992882958","https://openalex.org/W1996327711","https://openalex.org/W2009113274","https://openalex.org/W2016712107","https://openalex.org/W2021630848","https://openalex.org/W2027815553","https://openalex.org/W2031449719","https://openalex.org/W2034070267","https://openalex.org/W2047672715","https://openalex.org/W2056881083","https://openalex.org/W2057195902","https://openalex.org/W2062533676","https://openalex.org/W2074920600","https://openalex.org/W2075692164","https://openalex.org/W2080915318","https://openalex.org/W2090110922","https://openalex.org/W2090782076","https://openalex.org/W2098889731","https://openalex.org/W2099308584","https://openalex.org/W2100563036","https://openalex.org/W2100827887","https://openalex.org/W2100929382","https://openalex.org/W2108987487","https://openalex.org/W2114024619","https://openalex.org/W2123525093","https://openalex.org/W2123862598","https://openalex.org/W2132842501","https://openalex.org/W2137775956","https://openalex.org/W2139166279","https://openalex.org/W2142565532","https://openalex.org/W2144377773","https://openalex.org/W2147396454","https://openalex.org/W2159887157","https://openalex.org/W2160257187","https://openalex.org/W2163480486","https://openalex.org/W2163799196","https://openalex.org/W2167212630","https://openalex.org/W2168310604","https://openalex.org/W2171464043","https://openalex.org/W2195203261","https://openalex.org/W2305293558","https://openalex.org/W2362265365","https://openalex.org/W2406158805","https://openalex.org/W2471950830","https://openalex.org/W2603185655","https://openalex.org/W2610807327","https://openalex.org/W2623671274","https://openalex.org/W2755026528","https://openalex.org/W2761592044"],"related_works":["https://openalex.org/W4382246684","https://openalex.org/W4387845407","https://openalex.org/W2902857455","https://openalex.org/W4207004502","https://openalex.org/W4212982662","https://openalex.org/W2160244398","https://openalex.org/W2907885506","https://openalex.org/W2022444336","https://openalex.org/W2601867172","https://openalex.org/W4207063555"],"abstract_inverted_index":{"BACKGROUND:":[0],"With":[1],"the":[2,42,80,124,144,149,173,238],"increasing":[3],"development":[4],"of":[5,87,146,151,175,188,198,248,290],"biotechnology":[6],"and":[7,15,31,52,59,62,82,159,166,179,182,195,216,229,282,293,310],"informatics":[8],"technology,":[9],"publicly":[10],"available":[11,318],"data":[12,26,38,47,65,112,119,249,306,308],"in":[13,24,50,85],"chemistry":[14,51],"biology":[16,53],"are":[17,48,66,72,256],"undergoing":[18],"explosive":[19],"growth.":[20],"Such":[21],"wealthy":[22],"information":[23],"these":[25,93],"needs":[27],"to":[28,33,115,235,241,258,271,286,313],"be":[29,108],"extracted":[30],"transformed":[32],"useful":[34],"knowledge":[35],"by":[36,140],"various":[37,100,137,152,176,280,288],"mining":[39,113],"methods.":[40],"Considering":[41],"amazing":[43],"rate":[44],"at":[45,300,319],"which":[46,106,130,298],"accumulated":[49],"fields,":[54],"new":[55],"tools":[56],"that":[57,76],"process":[58],"interpret":[60],"large":[61],"complex":[63,94,177,294],"interaction":[64,183,217,295],"increasingly":[67],"important.":[68],"So":[69],"far,":[70],"there":[71],"no":[73],"suitable":[74],"toolkits":[75],"can":[77],"effectively":[78],"link":[79],"chemical":[81,178,193,199],"biological":[83,180,291],"space":[84],"view":[86],"molecular":[88,101,138,147,153,265,269],"representation.":[89],"To":[90],"further":[91],"explore":[92],"data,":[95,266],"an":[96,245],"integrated":[97,110,302],"toolkit":[98],"for":[99,133,136,155,172],"representation":[102,270],"is":[103,128,163,316],"urgently":[104],"needed":[105],"could":[107,190],"easily":[109],"with":[111],"algorithms":[114],"start":[116,259],"a":[117,164,260],"full":[118,261],"analysis":[120,250,303],"pipeline.":[121],"RESULTS:":[122],"Herein,":[123],"python":[125,169],"library":[126,170],"PyBioMed":[127,162,189,243,278,315],"presented,":[129],"comprises":[131],"functionalities":[132],"online":[134],"download":[135],"objects":[139],"providing":[141],"different":[142,224],"IDs,":[143],"pretreatment":[145],"structures,":[148],"computation":[150],"descriptors":[154,194,203,212,218],"chemicals,":[156],"proteins,":[157],"DNAs":[158],"their":[160],"interactions.":[161],"feature-rich":[165],"highly":[167,283],"customized":[168,284],"used":[171],"characterization":[174],"molecules":[181,292],"samples.":[184],"The":[185],"current":[186],"version":[187],"calculate":[191,287],"775":[192],"19":[196],"kinds":[197],"fingerprints,":[200],"9920":[201],"protein":[202,206],"based":[204],"on":[205],"sequences,":[207,215],"more":[208],"than":[209],"6000":[210],"DNA":[211],"from":[213,219,263,305],"nucleotide":[214],"pairwise":[220],"samples":[221,296],"using":[222,253],"three":[223],"combining":[225],"strategies.":[226],"Several":[227],"examples":[228],"five":[230],"real-life":[231],"applications":[232],"were":[233],"provided":[234],"clearly":[236],"guide":[237],"users":[239,255],"how":[240],"use":[242],"as":[244],"integral":[246],"part":[247],"projects.":[251],"By":[252],"PyBioMed,":[254],"able":[257],"pipelining":[262],"getting":[264],"pretreating":[267],"molecules,":[268],"constructing":[272],"machine":[273],"learning":[274],"models":[275],"conveniently.":[276],"CONCLUSION:":[277],"provides":[279],"user-friendly":[281],"APIs":[285],"features":[289],"conveniently,":[297],"aims":[299],"building":[301],"pipelines":[304],"acquisition,":[307],"checking,":[309],"descriptor":[311],"calculation":[312],"modeling.":[314],"freely":[317],"http://projects.scbdd.com/pybiomed.html":[320],".":[321]},"counts_by_year":[{"year":2026,"cited_by_count":7},{"year":2025,"cited_by_count":17},{"year":2024,"cited_by_count":32},{"year":2023,"cited_by_count":23},{"year":2022,"cited_by_count":35},{"year":2021,"cited_by_count":27},{"year":2020,"cited_by_count":16},{"year":2019,"cited_by_count":10}],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
