{"id":"https://openalex.org/W2623671274","doi":"https://doi.org/10.1186/s13321-017-0211-5","title":"QuBiLS-MAS, open source multi-platform software for atom- and bond-based topological (2D) and chiral (2.5D) algebraic molecular descriptors computations","display_name":"QuBiLS-MAS, open source multi-platform software for atom- and bond-based topological (2D) and chiral (2.5D) algebraic molecular descriptors computations","publication_year":2017,"publication_date":"2017-06-07","ids":{"openalex":"https://openalex.org/W2623671274","doi":"https://doi.org/10.1186/s13321-017-0211-5","mag":"2623671274","pmid":"https://pubmed.ncbi.nlm.nih.gov/29086120"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-017-0211-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-017-0211-5","pdf_url":null,"source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1186/s13321-017-0211-5","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5061101104","display_name":"Jos\u00e9 R. Vald\u00e9s\u2010Martin\u00ed","orcid":"https://orcid.org/0000-0003-0706-7120"},"institutions":[{"id":"https://openalex.org/I4210160593","display_name":"Bridge Pharma (United States)","ror":"https://ror.org/05psz3234","country_code":"US","type":"company","lineage":["https://openalex.org/I4210160593"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jos\u00e9 R. Vald\u00e9s-Martin\u00ed","raw_affiliation_strings":["StreelBridge Laboratories, SteelBridge Consulting Technology Solutions, Miami, FL, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"StreelBridge Laboratories, SteelBridge Consulting Technology Solutions, Miami, FL, USA","institution_ids":["https://openalex.org/I4210160593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015398632","display_name":"Yovani Marrero\u2010Ponce","orcid":"https://orcid.org/0000-0003-2721-1142"},"institutions":[{"id":"https://openalex.org/I16097986","display_name":"Universitat de Val\u00e8ncia","ror":"https://ror.org/043nxc105","country_code":"ES","type":"education","lineage":["https://openalex.org/I16097986"]},{"id":"https://openalex.org/I4210140740","display_name":"Universidad Internacional del Ecuador","ror":"https://ror.org/04xf2rc74","country_code":"EC","type":"education","lineage":["https://openalex.org/I4210140740"]},{"id":"https://openalex.org/I4210160360","display_name":"Fundaci\u00f3n Universitaria Tecnol\u00f3gico Comfenalco Cartagena","ror":"https://ror.org/04z1myv13","country_code":"CO","type":"education","lineage":["https://openalex.org/I4210160360"]},{"id":"https://openalex.org/I69094615","display_name":"Universidad San Francisco de Quito","ror":"https://ror.org/01r2c3v86","country_code":"EC","type":"education","lineage":["https://openalex.org/I69094615"]}],"countries":["CO","EC","ES"],"is_corresponding":true,"raw_author_name":"Yovani Marrero-Ponce","raw_affiliation_strings":["Computer-Aided Molecular \"Biosilico\" Discovery and Bioinformatics Research International Network (CAMD-BIR IN), Cumbay\u00e1, Quito, Ecuador. ymarrero77@yahoo.es","Grupo de Investigaci\u00f3n Ambiental (GIA), Fundaci\u00f3n Universitaria Tecnol\u00f3gico de Comfenalco, Facultad de Ingenier\u00edas, Programa de Ingenier\u00eda de Procesos, Cartagena de Indias, Bol\u00edvar, Colombia. ymarrero77@yahoo.es","Unidad de Investigaci\u00f3n de Dise\u00f1o de F\u00e1rmacos y Conectividad Molecular, Departamento de Qu\u00edmica F\u00edsica, Facultad de Farmacia, Universitat de Val\u00e8ncia, Valencia, Spain. ymarrero77@yahoo.es","Universidad San Francisco de Quito (USFQ), Grupo de Medicina Molecular y Traslacional (MeM&T), Colegio de Ciencias de la Salud (COCSA), Escuela de Medicina, Edificio de Especialidades M\u00e9dicas, Quito, Ecuador. ymarrero77@yahoo.es","Universidad San Francisco de Quito (USFQ), Instituto de Simulaci\u00f3n Computacional (ISC-USFQ), Diego de Robles y v\u00eda Interoce\u00e1nica, 170157, Quito, Pichincha, Ecuador. ymarrero77@yahoo.es","Universidad San Francisco de Quito (USFQ), Grupo de Medicina Molecular y Traslacional (MeM&T), Colegio de Ciencias de la Salud (COCSA), Escuela de Medicina, Edificio de Especialidades M\u00e9dicas, Quito, Ecuador"],"raw_orcid":"https://orcid.org/0000-0003-2721-1142","affiliations":[{"raw_affiliation_string":"Computer-Aided Molecular \"Biosilico\" Discovery and Bioinformatics Research International Network (CAMD-BIR IN), Cumbay\u00e1, Quito, Ecuador. ymarrero77@yahoo.es","institution_ids":["https://openalex.org/I4210140740"]},{"raw_affiliation_string":"Grupo de Investigaci\u00f3n Ambiental (GIA), Fundaci\u00f3n Universitaria Tecnol\u00f3gico de Comfenalco, Facultad de Ingenier\u00edas, Programa de Ingenier\u00eda de Procesos, Cartagena de Indias, Bol\u00edvar, Colombia. ymarrero77@yahoo.es","institution_ids":["https://openalex.org/I4210160360"]},{"raw_affiliation_string":"Unidad de Investigaci\u00f3n de Dise\u00f1o de F\u00e1rmacos y Conectividad Molecular, Departamento de Qu\u00edmica F\u00edsica, Facultad de Farmacia, Universitat de Val\u00e8ncia, Valencia, Spain. ymarrero77@yahoo.es","institution_ids":["https://openalex.org/I16097986"]},{"raw_affiliation_string":"Universidad San Francisco de Quito (USFQ), Grupo de Medicina Molecular y Traslacional (MeM&T), Colegio de Ciencias de la Salud (COCSA), Escuela de Medicina, Edificio de Especialidades M\u00e9dicas, Quito, Ecuador. ymarrero77@yahoo.es","institution_ids":["https://openalex.org/I69094615"]},{"raw_affiliation_string":"Universidad San Francisco de Quito (USFQ), Instituto de Simulaci\u00f3n Computacional (ISC-USFQ), Diego de Robles y v\u00eda Interoce\u00e1nica, 170157, Quito, Pichincha, Ecuador. ymarrero77@yahoo.es","institution_ids":["https://openalex.org/I69094615"]},{"raw_affiliation_string":"Universidad San Francisco de Quito (USFQ), Grupo de Medicina Molecular y Traslacional (MeM&T), Colegio de Ciencias de la Salud (COCSA), Escuela de Medicina, Edificio de Especialidades M\u00e9dicas, Quito, Ecuador","institution_ids":["https://openalex.org/I69094615"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008729002","display_name":"C\u00e9sar R. Garc\u00eda\u2010Jacas","orcid":"https://orcid.org/0000-0002-3962-7658"},"institutions":[{"id":"https://openalex.org/I39398033","display_name":"Pontificia Universidad Cat\u00f3lica del Ecuador","ror":"https://ror.org/02qztda51","country_code":"EC","type":"education","lineage":["https://openalex.org/I39398033"]},{"id":"https://openalex.org/I4210102241","display_name":"University of Information Science","ror":"https://ror.org/022camr20","country_code":"CU","type":"education","lineage":["https://openalex.org/I4210102241"]},{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["CU","EC","MX"],"is_corresponding":false,"raw_author_name":"C\u00e9sar R. Garc\u00eda-Jacas","raw_affiliation_strings":["Escuela de Sistemas y Computaci\u00f3n, Pontificia Universidad Cat\u00f3lica del Ecuador Sede Esmeraldas (PUCESE), Esmeraldas, Ecuador","Grupo de Investigaci\u00f3n de Bioinform\u00e1tica, Universidad de las Ciencias Inform\u00e1ticas (UCI), Havana, Cuba","Instituto de Qu\u00edmica, Universidad Nacional Aut\u00f3noma de M\u00e9xico (UNAM), Ciudad de M\u00e9xico, M\u00e9xico"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Escuela de Sistemas y Computaci\u00f3n, Pontificia Universidad Cat\u00f3lica del Ecuador Sede Esmeraldas (PUCESE), Esmeraldas, Ecuador","institution_ids":["https://openalex.org/I39398033"]},{"raw_affiliation_string":"Grupo de Investigaci\u00f3n de Bioinform\u00e1tica, Universidad de las Ciencias Inform\u00e1ticas (UCI), Havana, Cuba","institution_ids":["https://openalex.org/I4210102241"]},{"raw_affiliation_string":"Instituto de Qu\u00edmica, Universidad Nacional Aut\u00f3noma de M\u00e9xico (UNAM), Ciudad de M\u00e9xico, M\u00e9xico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057869875","display_name":"Karina Mart\u00ednez\u2010Mayorga","orcid":"https://orcid.org/0000-0002-6974-7941"},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Karina Martinez-Mayorga","raw_affiliation_strings":["Instituto de Qu\u00edmica, Universidad Nacional Aut\u00f3noma de M\u00e9xico (UNAM), Ciudad de M\u00e9xico, M\u00e9xico"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Instituto de Qu\u00edmica, Universidad Nacional Aut\u00f3noma de M\u00e9xico (UNAM), Ciudad de M\u00e9xico, M\u00e9xico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020444039","display_name":"Stephen J. Barigye","orcid":"https://orcid.org/0000-0003-3547-8293"},"institutions":[{"id":"https://openalex.org/I4210102282","display_name":"Universidad de Las Am\u00e9ricas","ror":"https://ror.org/0198j4566","country_code":"EC","type":"education","lineage":["https://openalex.org/I4210102282"]}],"countries":["EC"],"is_corresponding":false,"raw_author_name":"Stephen J. Barigye","raw_affiliation_strings":["Facultad de Medicina, Universidad de Las Am\u00e9ricas, Quito, Pichincha, Ecuador"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Facultad de Medicina, Universidad de Las Am\u00e9ricas, Quito, Pichincha, Ecuador","institution_ids":["https://openalex.org/I4210102282"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031334841","display_name":"Yasser Silveira Vaz d\u2018Almeida","orcid":null},"institutions":[{"id":"https://openalex.org/I4210108854","display_name":"Centro Nacional de Endemias","ror":"https://ror.org/01p5vg276","country_code":"ST","type":"healthcare","lineage":["https://openalex.org/I4210108854"]}],"countries":["ST"],"is_corresponding":false,"raw_author_name":"Yasser Silveira Vaz d\u2018Almeida","raw_affiliation_strings":["YByte - Solu\u00e7\u00f5es Inform\u00e1ticas, Lda, Avenida da Independ\u00eancia, S\u00e3o Tom\u00e9, Sao Tome and Principe"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"YByte - Solu\u00e7\u00f5es Inform\u00e1ticas, Lda, Avenida da Independ\u00eancia, S\u00e3o Tom\u00e9, Sao Tome and Principe","institution_ids":["https://openalex.org/I4210108854"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5094364950","display_name":"Hai Pham\u2010The","orcid":"https://orcid.org/0000-0003-4531-7223"},"institutions":[{"id":"https://openalex.org/I4210137425","display_name":"Hanoi University of Pharmacy","ror":"https://ror.org/03psjxz30","country_code":"VN","type":"education","lineage":["https://openalex.org/I4210137425"]}],"countries":["VN"],"is_corresponding":false,"raw_author_name":"Hai Pham-The","raw_affiliation_strings":["Department of Pharmaceutical Chemistry, Hanoi University of Pharmacy, 13-15 Le Thanh Tong, Hoan Kiem, Hanoi, Vietnam"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pharmaceutical Chemistry, Hanoi University of Pharmacy, 13-15 Le Thanh Tong, Hoan Kiem, Hanoi, Vietnam","institution_ids":["https://openalex.org/I4210137425"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074988142","display_name":"Facundo P\u00e9rez\u2010Gim\u00e9nez","orcid":null},"institutions":[{"id":"https://openalex.org/I16097986","display_name":"Universitat de Val\u00e8ncia","ror":"https://ror.org/043nxc105","country_code":"ES","type":"education","lineage":["https://openalex.org/I16097986"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Facundo P\u00e9rez-Gim\u00e9nez","raw_affiliation_strings":["Unidad de Investigaci\u00f3n de Dise\u00f1o de F\u00e1rmacos y Conectividad Molecular, Departamento de Qu\u00edmica F\u00edsica, Facultad de Farmacia, Universitat de Val\u00e8ncia, Valencia, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Unidad de Investigaci\u00f3n de Dise\u00f1o de F\u00e1rmacos y Conectividad Molecular, Departamento de Qu\u00edmica F\u00edsica, Facultad de Farmacia, Universitat de Val\u00e8ncia, Valencia, Spain","institution_ids":["https://openalex.org/I16097986"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5063425964","display_name":"Carlos Morell","orcid":"https://orcid.org/0000-0003-3207-8219"},"institutions":[{"id":"https://openalex.org/I3018837529","display_name":"Universidad Central \"Marta Abreu\" de las Villas (UCLV)","ror":"https://ror.org/01cdy6h50","country_code":"CU","type":"education","lineage":["https://openalex.org/I3018837529"]},{"id":"https://openalex.org/I4210111418","display_name":"Universidad Central","ror":"https://ror.org/01wnb0b83","country_code":"CR","type":"education","lineage":["https://openalex.org/I4210111418"]}],"countries":["CR","CU"],"is_corresponding":false,"raw_author_name":"Carlos A. Morell","raw_affiliation_strings":["Laboratorio de Inteligencia Artificial, Centro de Estudios de Inform\u00e1tica (CEI), Facultad de Matem\u00e1tica, F\u00edsica y Computaci\u00f3n, Universidad Central \"Marta Abreu\" de Las Villas, Santa Clara, Villa Clara, Cuba","Laboratorio de Inteligencia Artificial, Centro de Estudios de Inform\u00e1tica (CEI), Facultad de Matem\u00e1tica, F\u00edsica y Computaci\u00f3n, Universidad Central \u201cMarta Abreu\u201d de Las Villas, Santa Clara, Villa Clara, Cuba"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratorio de Inteligencia Artificial, Centro de Estudios de Inform\u00e1tica (CEI), Facultad de Matem\u00e1tica, F\u00edsica y Computaci\u00f3n, Universidad Central \"Marta Abreu\" de Las Villas, Santa Clara, Villa Clara, Cuba","institution_ids":["https://openalex.org/I3018837529","https://openalex.org/I4210111418"]},{"raw_affiliation_string":"Laboratorio de Inteligencia Artificial, Centro de Estudios de Inform\u00e1tica (CEI), Facultad de Matem\u00e1tica, F\u00edsica y Computaci\u00f3n, Universidad Central \u201cMarta Abreu\u201d de Las Villas, Santa Clara, Villa Clara, Cuba","institution_ids":["https://openalex.org/I3018837529"]}]}],"institutions":[],"countries_distinct_count":9,"institutions_distinct_count":13,"corresponding_author_ids":["https://openalex.org/A5015398632"],"corresponding_institution_ids":["https://openalex.org/I16097986","https://openalex.org/I4210140740","https://openalex.org/I4210160360","https://openalex.org/I69094615"],"apc_list":{"value":2190,"currency":"USD","value_usd":2190},"apc_paid":{"value":2190,"currency":"USD","value_usd":2190},"fwci":6.3739,"has_fulltext":false,"cited_by_count":69,"citation_normalized_percentile":{"value":0.97173924,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"9","issue":"1","first_page":"35","last_page":"35"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.7476000189781189,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.7476000189781189,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11476","display_name":"Graph theory and applications","score":0.12890000641345978,"subfield":{"id":"https://openalex.org/subfields/2608","display_name":"Geometry and Topology"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12527","display_name":"Chemistry and Stereochemistry Studies","score":0.011900000274181366,"subfield":{"id":"https://openalex.org/subfields/1605","display_name":"Organic Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/molecular-graph","display_name":"Molecular graph","score":0.5588412284851074},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.49932289123535156},{"id":"https://openalex.org/keywords/rotation-formalisms-in-three-dimensions","display_name":"Rotation formalisms in three dimensions","score":0.48478811979293823},{"id":"https://openalex.org/keywords/algebraic-number","display_name":"Algebraic number","score":0.4503624439239502},{"id":"https://openalex.org/keywords/topology","display_name":"Topology (electrical circuits)","score":0.4375606179237366},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.41938111186027527},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.36464741826057434},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.300825834274292},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.2638983130455017},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.1244400143623352}],"concepts":[{"id":"https://openalex.org/C2780022179","wikidata":"https://www.wikidata.org/wiki/Q1986794","display_name":"Molecular graph","level":3,"score":0.5588412284851074},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.49932289123535156},{"id":"https://openalex.org/C171018156","wikidata":"https://www.wikidata.org/wiki/Q7370306","display_name":"Rotation formalisms in three dimensions","level":2,"score":0.48478811979293823},{"id":"https://openalex.org/C9376300","wikidata":"https://www.wikidata.org/wiki/Q168817","display_name":"Algebraic number","level":2,"score":0.4503624439239502},{"id":"https://openalex.org/C184720557","wikidata":"https://www.wikidata.org/wiki/Q7825049","display_name":"Topology (electrical circuits)","level":2,"score":0.4375606179237366},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.41938111186027527},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.36464741826057434},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.300825834274292},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.2638983130455017},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.1244400143623352},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1186/s13321-017-0211-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-017-0211-5","pdf_url":null,"source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:29086120","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29086120","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:4329076","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC5462671","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:5462671","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5462671","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Cheminform","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:f67517b919f8485d973e753d195433dd","is_oa":false,"landing_page_url":"https://doaj.org/article/f67517b919f8485d973e753d195433dd","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Cheminformatics, Vol 9, Iss 1, Pp 1-26 (2017)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s13321-017-0211-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-017-0211-5","pdf_url":null,"source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":84,"referenced_works":["https://openalex.org/W122375228","https://openalex.org/W143962061","https://openalex.org/W182829469","https://openalex.org/W1500138551","https://openalex.org/W1545231783","https://openalex.org/W1553372930","https://openalex.org/W1573940592","https://openalex.org/W1965345429","https://openalex.org/W1970968030","https://openalex.org/W1973038589","https://openalex.org/W1977566906","https://openalex.org/W1982943381","https://openalex.org/W1983492171","https://openalex.org/W1985783033","https://openalex.org/W1987096585","https://openalex.org/W1990200116","https://openalex.org/W1990283121","https://openalex.org/W1998351517","https://openalex.org/W2000561702","https://openalex.org/W2010982467","https://openalex.org/W2016003728","https://openalex.org/W2023312638","https://openalex.org/W2025223367","https://openalex.org/W2026355982","https://openalex.org/W2028726078","https://openalex.org/W2030038317","https://openalex.org/W2039340637","https://openalex.org/W2039455492","https://openalex.org/W2041490868","https://openalex.org/W2043906184","https://openalex.org/W2050877276","https://openalex.org/W2056593372","https://openalex.org/W2057069496","https://openalex.org/W2058262899","https://openalex.org/W2059899216","https://openalex.org/W2065753888","https://openalex.org/W2066854714","https://openalex.org/W2068068200","https://openalex.org/W2069950878","https://openalex.org/W2072671784","https://openalex.org/W2076161502","https://openalex.org/W2076368829","https://openalex.org/W2078064829","https://openalex.org/W2081494503","https://openalex.org/W2081794309","https://openalex.org/W2083352412","https://openalex.org/W2085902157","https://openalex.org/W2087470089","https://openalex.org/W2093354577","https://openalex.org/W2094253930","https://openalex.org/W2094938278","https://openalex.org/W2094942990","https://openalex.org/W2095915800","https://openalex.org/W2097760161","https://openalex.org/W2098889731","https://openalex.org/W2100563036","https://openalex.org/W2104499761","https://openalex.org/W2107680276","https://openalex.org/W2117920213","https://openalex.org/W2118371478","https://openalex.org/W2123676318","https://openalex.org/W2126999940","https://openalex.org/W2129006985","https://openalex.org/W2133293687","https://openalex.org/W2142512079","https://openalex.org/W2144451477","https://openalex.org/W2148933468","https://openalex.org/W2151554678","https://openalex.org/W2159887157","https://openalex.org/W2163799196","https://openalex.org/W2166036342","https://openalex.org/W2199634952","https://openalex.org/W2212373934","https://openalex.org/W2212567822","https://openalex.org/W2241011319","https://openalex.org/W2285381155","https://openalex.org/W2482550502","https://openalex.org/W2529385511","https://openalex.org/W2559145072","https://openalex.org/W2758699603","https://openalex.org/W2907881342","https://openalex.org/W4205135512","https://openalex.org/W4238149895","https://openalex.org/W4291284775"],"related_works":["https://openalex.org/W57206970","https://openalex.org/W3196191855","https://openalex.org/W1950785758","https://openalex.org/W2498253392","https://openalex.org/W4235091896","https://openalex.org/W2023896637","https://openalex.org/W2185981755","https://openalex.org/W176020069","https://openalex.org/W2089263635","https://openalex.org/W2969553894"],"abstract_inverted_index":{"BACKGROUND:":[0],"In":[1],"previous":[2],"reports,":[3],"Marrero-Ponce":[4],"et":[5],"al.":[6],"proposed":[7,369],"algebraic":[8,48,167],"formalisms":[9],"for":[10,25,139,169,332,367,378,405,431,455],"characterizing":[11],"topological":[12,157,214],"(2D)":[13],"and":[14,21,46,50,54,62,88,142,150,165,171,186,209,267,297,327,348,371,463],"chiral":[15],"(2.5D)":[16],"molecular":[17,34,39,117,159,240,248],"features":[18],"through":[19,356],"atom-":[20,61,170],"bond-based":[22,63,172],"ToMoCoMD-CARDD":[23,191],"(acronym":[24,138],"Topological":[26],"Molecular":[27],"Computational":[28],"Design-Computer":[29],"Aided":[30],"Rational":[31],"Drug":[32],"Design)":[33],"descriptors.":[35,400],"These":[36,66],"MDs":[37,67],"codify":[38],"information":[40,392],"based":[41,145,161,206,364],"on":[42,146,162,207],"the":[43,51,73,99,112,123,132,136,189,197,236,239,286,290,309,333,337,345,368,372,379,387,398,406,410,428,445,448,456],"bilinear,":[44,163],"quadratic":[45,164],"linear":[47,166],"forms":[49,168],"graph-theoretical":[52],"electronic-density":[53,148],"edge-adjacency":[55],"matrices":[56],"in":[57,72,107,115,120,183,235,257,264,277,305,339,351,444],"order":[58,278],"to":[59,122,155,217,229,246,279,394,409,439],"consider":[60,247],"relations,":[64],"respectively.":[65],"have":[68],"been":[69],"successfully":[70],"applied":[71,273],"screening":[74,465],"of":[75,78,188,238,250,254,289,320,336,344,459,466],"chemical":[76,258,391,460],"compounds":[77],"different":[79],"therapeutic":[80],"applications":[81],"ranging":[82],"from":[83],"antimalarials,":[84],"antibacterials,":[85],"tyrosinase":[86],"inhibitors":[87],"so":[89],"on.":[90],"To":[91],"compute":[92,156,280],"these":[93,422],"MDs,":[94],"a":[95,293,323,360,402,452],"computational":[96],"program":[97,302],"with":[98,437],"same":[100],"name":[101],"was":[102,178,303],"initially":[103],"developed.":[104],"However,":[105],"this":[106,352],"house":[108],"software":[109,153,284,318,353],"barely":[110],"offered":[111],"functionalities":[113],"required":[114],"contemporary":[116],"modeling":[118],"tasks,":[119],"addition":[121],"inherent":[124],"limitations":[125],"that":[126,386,395,427],"made":[127],"its":[128],"usability":[129],"impractical.":[130],"Therefore,":[131,447],"present":[133],"manuscript":[134],"introduces":[135],"QuBiLS-MAS":[137,176,317,370,388,429,449],"Quadratic,":[140],"Bilinear":[141],"N-Linear":[143],"mapS":[144],"graph-theoretic":[147],"Matrices":[149],"Atomic":[151],"weightingS)":[152],"designed":[154,179],"(0-2.5D)":[158],"descriptors":[160,276],"relations.":[173],"RESULTS:":[174],"The":[175,316,342],"module":[177,296],"as":[180,232],"standalone":[181],"software,":[182],"which":[184],"extensions":[185,347],"generalizations":[187,349],"former":[190],"2D-algebraic":[192],"indices":[193,374],"are":[194],"implemented,":[195],"considering":[196],"following":[198],"aspects:":[199],"(a)":[200],"two":[201,321],"new":[202,244],"matrix":[203,265],"normalization":[204],"approaches":[205],"double-stochastic":[208],"mutual":[210],"probability":[211],"formalisms;":[212],"(b)":[213],"constraints":[215],"(cut-offs)":[216],"take":[218],"into":[219],"account":[220],"particular":[221],"inter-atomic":[222],"relations;":[223],"(c)":[224],"six":[225],"additional":[226],"atomic":[227],"properties":[228],"be":[230],"used":[231],"weighting":[233],"schemes":[234],"calculation":[237],"vectors;":[241],"(d)":[242],"four":[243],"local-fragments":[245],"regions":[249],"interest;":[251],"(e)":[252],"number":[253],"lone-pair":[255],"electrons":[256],"structure":[259],"defined":[260],"by":[261,397],"diagonal":[262],"coefficients":[263],"representations;":[266],"(f)":[268],"several":[269],"aggregation":[270],"operators":[271],"(invariants)":[272],"over":[274],"atom/bond-level":[275],"global":[281],"indices.":[282],"This":[283,301],"permits":[285],"parallel":[287],"computation":[288],"indices,":[291],"contains":[292],"batch":[294],"processing":[295],"data":[298],"curation":[299],"functionalities.":[300],"developed":[304],"Java":[306],"v1.7":[307],"using":[308,413],"Chemistry":[310],"Development":[311],"Kit":[312],"library":[313,330],"(version":[314],"1.4.19).":[315],"consists":[319],"components:":[322],"desktop":[324],"interface":[325],"(GUI)":[326],"an":[328],"API":[329],"allowing":[331],"easy":[334],"integration":[335],"latter":[338],"chemoinformatics":[340],"applications.":[341],"relevance":[343],"novel":[346],"implemented":[350],"is":[354,417,425],"demonstrated":[355],"three":[357],"studies.":[358],"Firstly,":[359],"comparative":[361],"Shannon's":[362],"entropy":[363],"variability":[365],"study":[366,404],"DRAGON":[373,399],"demonstrates":[375],"superior":[376],"performance":[377,436],"former.":[380],"A":[381],"principal":[382],"component":[383],"analysis":[384,458],"reveals":[385],"approach":[389,430,450],"captures":[390],"orthogonal":[393],"codified":[396],"Lastly,":[401],"QSAR":[403,441],"binding":[407],"affinity":[408],"corticosteroid-binding":[411],"globulin":[412],"Cramer's":[414],"steroid":[415],"dataset":[416],"carried":[418],"out.":[419],"CONCLUSIONS:":[420],"From":[421],"analyses,":[423],"it":[424],"revealed":[426],"atom-pair":[432],"relations":[433],"yields":[434],"similar-to-superior":[435],"regard":[438],"other":[440],"methodologies":[442],"reported":[443],"literature.":[446],"constitutes":[451],"useful":[453],"tool":[454],"diversity":[457],"compound":[461],"datasets":[462],"high-throughput":[464],"structure-activity":[467],"data.":[468]},"counts_by_year":[{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":9},{"year":2021,"cited_by_count":15},{"year":2020,"cited_by_count":11},{"year":2019,"cited_by_count":10},{"year":2018,"cited_by_count":9}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
