{"id":"https://openalex.org/W2593512981","doi":"https://doi.org/10.1186/s13321-017-0204-4","title":"Large-scale virtual screening on public cloud resources with Apache Spark","display_name":"Large-scale virtual screening on public cloud resources with Apache Spark","publication_year":2017,"publication_date":"2017-03-06","ids":{"openalex":"https://openalex.org/W2593512981","doi":"https://doi.org/10.1186/s13321-017-0204-4","mag":"2593512981","pmid":"https://pubmed.ncbi.nlm.nih.gov/28316653"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-017-0204-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-017-0204-4","pdf_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/s13321-017-0204-4","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/s13321-017-0204-4","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5067726598","display_name":"Marco Capuccini","orcid":"https://orcid.org/0000-0002-4851-759X"},"institutions":[{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]}],"countries":["SE"],"is_corresponding":true,"raw_author_name":"Marco Capuccini","raw_affiliation_strings":["Department of Information Technology, Uppsala University, Box 337, 75105 Uppsala, Sweden","Department of Pharmaceutical Biosciences, Uppsala University, Box 591, 75124 Uppsala, Sweden","Department of Information Technology, Uppsala University, Box 337, 75105, Uppsala, Sweden"],"affiliations":[{"raw_affiliation_string":"Department of Information Technology, Uppsala University, Box 337, 75105 Uppsala, Sweden","institution_ids":["https://openalex.org/I123387679"]},{"raw_affiliation_string":"Department of Pharmaceutical Biosciences, Uppsala University, Box 591, 75124 Uppsala, Sweden","institution_ids":["https://openalex.org/I123387679"]},{"raw_affiliation_string":"Department of Information Technology, Uppsala University, Box 337, 75105, Uppsala, Sweden","institution_ids":["https://openalex.org/I123387679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051279381","display_name":"Laeeq Ahmed","orcid":null},"institutions":[{"id":"https://openalex.org/I86987016","display_name":"KTH Royal Institute of Technology","ror":"https://ror.org/026vcq606","country_code":"SE","type":"education","lineage":["https://openalex.org/I86987016"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Laeeq Ahmed","raw_affiliation_strings":["Department of Computational Science and Technology, Royal Institute of Technology (KTH), Lindstedtsv\u00e4gen 5, 10044 Stockholm, Sweden","Department of Computational Science and Technology, Royal Institute of Technology (KTH), Lindstedtsv\u00e4gen 5, 10044, Stockholm, Sweden"],"affiliations":[{"raw_affiliation_string":"Department of Computational Science and Technology, Royal Institute of Technology (KTH), Lindstedtsv\u00e4gen 5, 10044 Stockholm, Sweden","institution_ids":["https://openalex.org/I86987016"]},{"raw_affiliation_string":"Department of Computational Science and Technology, Royal Institute of Technology (KTH), Lindstedtsv\u00e4gen 5, 10044, Stockholm, Sweden","institution_ids":["https://openalex.org/I86987016"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091859168","display_name":"Wesley Schaal","orcid":"https://orcid.org/0000-0001-6770-0878"},"institutions":[{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Wesley Schaal","raw_affiliation_strings":["Department of Pharmaceutical Biosciences, Uppsala University, Box 591, 75124 Uppsala, Sweden","Department of Pharmaceutical Biosciences, Uppsala University, Box 591, 75124, Uppsala, Sweden"],"affiliations":[{"raw_affiliation_string":"Department of Pharmaceutical Biosciences, Uppsala University, Box 591, 75124 Uppsala, Sweden","institution_ids":["https://openalex.org/I123387679"]},{"raw_affiliation_string":"Department of Pharmaceutical Biosciences, Uppsala University, Box 591, 75124, Uppsala, Sweden","institution_ids":["https://openalex.org/I123387679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011376663","display_name":"Erwin Laure","orcid":"https://orcid.org/0000-0002-9901-9857"},"institutions":[{"id":"https://openalex.org/I86987016","display_name":"KTH Royal Institute of Technology","ror":"https://ror.org/026vcq606","country_code":"SE","type":"education","lineage":["https://openalex.org/I86987016"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Erwin Laure","raw_affiliation_strings":["Department of Computational Science and Technology, Royal Institute of Technology (KTH), Lindstedtsv\u00e4gen 5, 10044 Stockholm, Sweden","Department of Computational Science and Technology, Royal Institute of Technology (KTH), Lindstedtsv\u00e4gen 5, 10044, Stockholm, Sweden"],"affiliations":[{"raw_affiliation_string":"Department of Computational Science and Technology, Royal Institute of Technology (KTH), Lindstedtsv\u00e4gen 5, 10044 Stockholm, Sweden","institution_ids":["https://openalex.org/I86987016"]},{"raw_affiliation_string":"Department of Computational Science and Technology, Royal Institute of Technology (KTH), Lindstedtsv\u00e4gen 5, 10044, Stockholm, Sweden","institution_ids":["https://openalex.org/I86987016"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046663348","display_name":"Ola Spjuth","orcid":"https://orcid.org/0000-0002-8083-2864"},"institutions":[{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Ola Spjuth","raw_affiliation_strings":["Department of Pharmaceutical Biosciences, Uppsala University, Box 591, 75124 Uppsala, Sweden","Department of Pharmaceutical Biosciences, Uppsala University, Box 591, 75124, Uppsala, Sweden"],"affiliations":[{"raw_affiliation_string":"Department of Pharmaceutical Biosciences, Uppsala University, Box 591, 75124 Uppsala, Sweden","institution_ids":["https://openalex.org/I123387679"]},{"raw_affiliation_string":"Department of Pharmaceutical Biosciences, Uppsala University, Box 591, 75124, Uppsala, Sweden","institution_ids":["https://openalex.org/I123387679"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5067726598"],"corresponding_institution_ids":["https://openalex.org/I123387679"],"apc_list":{"value":1290,"currency":"GBP","value_usd":1582},"apc_paid":{"value":1264,"currency":"EUR","value_usd":1363},"fwci":7.072,"has_fulltext":true,"cited_by_count":21,"citation_normalized_percentile":{"value":0.97017732,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"9","issue":"1","first_page":"15","last_page":"15"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10101","display_name":"Cloud Computing and Resource Management","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10101","display_name":"Cloud Computing and Resource Management","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11122","display_name":"Online Learning and Analytics","score":0.9563999772071838,"subfield":{"id":"https://openalex.org/subfields/1706","display_name":"Computer Science Applications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12016","display_name":"Web Data Mining and Analysis","score":0.9556000232696533,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8503435850143433},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.8428270220756531},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.8223567008972168},{"id":"https://openalex.org/keywords/spark","display_name":"SPARK (programming language)","score":0.7604427337646484},{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.5674813985824585},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5107126235961914},{"id":"https://openalex.org/keywords/big-data","display_name":"Big data","score":0.5054640769958496},{"id":"https://openalex.org/keywords/virtual-machine","display_name":"Virtual machine","score":0.48335522413253784},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.4737734794616699},{"id":"https://openalex.org/keywords/parallelizable-manifold","display_name":"Parallelizable manifold","score":0.47071024775505066},{"id":"https://openalex.org/keywords/implementation","display_name":"Implementation","score":0.4650398790836334},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.4501780867576599},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.17578482627868652},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.16846123337745667},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.11446300148963928}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8503435850143433},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.8428270220756531},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.8223567008972168},{"id":"https://openalex.org/C2781215313","wikidata":"https://www.wikidata.org/wiki/Q3493345","display_name":"SPARK (programming language)","level":2,"score":0.7604427337646484},{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.5674813985824585},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5107126235961914},{"id":"https://openalex.org/C75684735","wikidata":"https://www.wikidata.org/wiki/Q858810","display_name":"Big data","level":2,"score":0.5054640769958496},{"id":"https://openalex.org/C25344961","wikidata":"https://www.wikidata.org/wiki/Q192726","display_name":"Virtual machine","level":2,"score":0.48335522413253784},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.4737734794616699},{"id":"https://openalex.org/C148047603","wikidata":"https://www.wikidata.org/wiki/Q1014612","display_name":"Parallelizable manifold","level":2,"score":0.47071024775505066},{"id":"https://openalex.org/C26713055","wikidata":"https://www.wikidata.org/wiki/Q245962","display_name":"Implementation","level":2,"score":0.4650398790836334},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.4501780867576599},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.17578482627868652},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.16846123337745667},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.11446300148963928},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1186/s13321-017-0204-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-017-0204-4","pdf_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/s13321-017-0204-4","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:28316653","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28316653","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:4205516","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5339264","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13321-017-0204-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-017-0204-4","pdf_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/s13321-017-0204-4","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5699999928474426,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320317161","display_name":"Swedish e-Science Research Centre","ror":"https://ror.org/01e59yk92"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2593512981.pdf","grobid_xml":"https://content.openalex.org/works/W2593512981.grobid-xml"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W142258998","https://openalex.org/W1500036797","https://openalex.org/W1512856678","https://openalex.org/W1575350781","https://openalex.org/W1973974137","https://openalex.org/W2011832328","https://openalex.org/W2021894741","https://openalex.org/W2027482274","https://openalex.org/W2051810242","https://openalex.org/W2092295849","https://openalex.org/W2131975293","https://openalex.org/W2133282230","https://openalex.org/W2140788825","https://openalex.org/W2167960276","https://openalex.org/W2169244518","https://openalex.org/W2173213060","https://openalex.org/W2176758925","https://openalex.org/W2189465200","https://openalex.org/W2190012392"],"related_works":["https://openalex.org/W4285069850","https://openalex.org/W2891970004","https://openalex.org/W4240963716","https://openalex.org/W1996916724","https://openalex.org/W1974634278","https://openalex.org/W1596637634","https://openalex.org/W2321918740","https://openalex.org/W2154273227","https://openalex.org/W1776186222","https://openalex.org/W2844620057"],"abstract_inverted_index":{"Our":[0,40],"method":[1,27],"enables":[2],"parallel":[3],"Structure-based":[4],"virtual":[5],"screening":[6],"on":[7,28],"public":[8],"cloud":[9],"resources":[10],"or":[11],"commodity":[12],"computer":[13],"clusters.":[14],"The":[15],"degree":[16],"of":[17],"scalability":[18],"that":[19],"we":[20],"achieve":[21],"allows":[22],"for":[23],"trying":[24],"out":[25],"our":[26],"relatively":[29],"small":[30],"libraries":[31],"first":[32],"and":[33,45],"then":[34],"to":[35,37],"scale":[36],"larger":[38],"libraries.":[39],"implementation":[41],"is":[42,47],"named":[43],"Spark-VS":[44],"it":[46],"freely":[48],"available":[49],"as":[50],"open":[51],"source":[52],"from":[53],"GitHub":[54],"(https://github.com/mcapuccini/spark-vs).Graphical":[55],"abstract.":[56]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":3}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
