{"id":"https://openalex.org/W2551556495","doi":"https://doi.org/10.1186/s13321-016-0176-9","title":"Consensus Diversity Plots: a global diversity analysis of chemical libraries","display_name":"Consensus Diversity Plots: a global diversity analysis of chemical libraries","publication_year":2016,"publication_date":"2016-11-10","ids":{"openalex":"https://openalex.org/W2551556495","doi":"https://doi.org/10.1186/s13321-016-0176-9","mag":"2551556495","pmid":"https://pubmed.ncbi.nlm.nih.gov/27895718"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-016-0176-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-016-0176-9","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-016-0176-9","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-016-0176-9","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5049755131","display_name":"Mariana Gonz\u00e1lez-Medina","orcid":"https://orcid.org/0000-0001-7365-939X"},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Mariana Gonz\u00e1lez-Medina","raw_affiliation_strings":["Facultad de Qu\u00edmica, Departamento de Farmacia, Universidad Nacional Aut\u00f3noma de M\u00e9xico, Avenida Universidad 3000, 04510 Mexico City, Mexico","Facultad de Qu\u00edmica, Departamento de Farmacia, Universidad Nacional Aut\u00f3noma de M\u00e9xico, Avenida Universidad 3000, 04510, Mexico City, Mexico"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Facultad de Qu\u00edmica, Departamento de Farmacia, Universidad Nacional Aut\u00f3noma de M\u00e9xico, Avenida Universidad 3000, 04510 Mexico City, Mexico","institution_ids":["https://openalex.org/I8961855"]},{"raw_affiliation_string":"Facultad de Qu\u00edmica, Departamento de Farmacia, Universidad Nacional Aut\u00f3noma de M\u00e9xico, Avenida Universidad 3000, 04510, Mexico City, Mexico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004654043","display_name":"Fernando D. Prieto\u2010Mart\u00ednez","orcid":"https://orcid.org/0000-0002-0054-0862"},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Fernando D. Prieto-Mart\u00ednez","raw_affiliation_strings":["Facultad de Qu\u00edmica, Departamento de Farmacia, Universidad Nacional Aut\u00f3noma de M\u00e9xico, Avenida Universidad 3000, 04510 Mexico City, Mexico","Facultad de Qu\u00edmica, Departamento de Farmacia, Universidad Nacional Aut\u00f3noma de M\u00e9xico, Avenida Universidad 3000, 04510, Mexico City, Mexico"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Facultad de Qu\u00edmica, Departamento de Farmacia, Universidad Nacional Aut\u00f3noma de M\u00e9xico, Avenida Universidad 3000, 04510 Mexico City, Mexico","institution_ids":["https://openalex.org/I8961855"]},{"raw_affiliation_string":"Facultad de Qu\u00edmica, Departamento de Farmacia, Universidad Nacional Aut\u00f3noma de M\u00e9xico, Avenida Universidad 3000, 04510, Mexico City, Mexico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081223220","display_name":"John R. Owen","orcid":"https://orcid.org/0000-0002-4938-3693"},"institutions":[{"id":"https://openalex.org/I4210096394","display_name":"Queens University","ror":"https://ror.org/00strmv13","country_code":"BD","type":"education","lineage":["https://openalex.org/I4210096394"]}],"countries":["BD"],"is_corresponding":false,"raw_author_name":"John R. Owen","raw_affiliation_strings":["High-Performance Computing Research Group, ECIT Institute, Northern Ireland Science Park, Queens Road, Belfast, BT3 9DT UK","High-Performance Computing Research Group, ECIT Institute, Northern Ireland Science Park, Queens Road, Belfast, BT3 9DT, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"High-Performance Computing Research Group, ECIT Institute, Northern Ireland Science Park, Queens Road, Belfast, BT3 9DT UK","institution_ids":["https://openalex.org/I4210096394"]},{"raw_affiliation_string":"High-Performance Computing Research Group, ECIT Institute, Northern Ireland Science Park, Queens Road, Belfast, BT3 9DT, UK","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5086421148","display_name":"Jos\u00e9 L. Medina\u2010Franco","orcid":"https://orcid.org/0000-0003-4940-1107"},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":true,"raw_author_name":"Jos\u00e9 L. Medina-Franco","raw_affiliation_strings":["Facultad de Qu\u00edmica, Departamento de Farmacia, Universidad Nacional Aut\u00f3noma de M\u00e9xico, Avenida Universidad 3000, 04510 Mexico City, Mexico","Facultad de Qu\u00edmica, Departamento de Farmacia, Universidad Nacional Aut\u00f3noma de M\u00e9xico, Avenida Universidad 3000, 04510, Mexico City, Mexico"],"raw_orcid":"https://orcid.org/0000-0003-4940-1107","affiliations":[{"raw_affiliation_string":"Facultad de Qu\u00edmica, Departamento de Farmacia, Universidad Nacional Aut\u00f3noma de M\u00e9xico, Avenida Universidad 3000, 04510 Mexico City, Mexico","institution_ids":["https://openalex.org/I8961855"]},{"raw_affiliation_string":"Facultad de Qu\u00edmica, Departamento de Farmacia, Universidad Nacional Aut\u00f3noma de M\u00e9xico, Avenida Universidad 3000, 04510, Mexico City, Mexico","institution_ids":["https://openalex.org/I8961855"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5086421148"],"corresponding_institution_ids":["https://openalex.org/I8961855"],"apc_list":{"value":2390,"currency":"USD","value_usd":2390},"apc_paid":{"value":2390,"currency":"USD","value_usd":2390},"fwci":9.3179,"has_fulltext":true,"cited_by_count":90,"citation_normalized_percentile":{"value":0.98058851,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"8","issue":"1","first_page":"63","last_page":"63"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9857000112533569,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9857000112533569,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.006000000052154064,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12748","display_name":"Molecular spectroscopy and chirality","score":0.0010999999940395355,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/diversity","display_name":"Diversity (politics)","score":0.8234442472457886},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.570213794708252},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4966138005256653},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3986864984035492},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3415762782096863},{"id":"https://openalex.org/keywords/political-science","display_name":"Political science","score":0.15069004893302917}],"concepts":[{"id":"https://openalex.org/C2781316041","wikidata":"https://www.wikidata.org/wiki/Q1230584","display_name":"Diversity (politics)","level":2,"score":0.8234442472457886},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.570213794708252},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4966138005256653},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3986864984035492},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3415762782096863},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.15069004893302917},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1186/s13321-016-0176-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-016-0176-9","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-016-0176-9","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:27895718","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27895718","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":"Journal Article"},{"id":"pmh:oai:europepmc.org:4072379","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5105260","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13321-016-0176-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-016-0176-9","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-016-0176-9","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1887467076","display_name":null,"funder_award_id":"PAPIME PE200116","funder_id":"https://openalex.org/F4320323401","funder_display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico"},{"id":"https://openalex.org/G2968322397","display_name":null,"funder_award_id":"5000-9163","funder_id":"https://openalex.org/F4320323401","funder_display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico"},{"id":"https://openalex.org/G5647576614","display_name":null,"funder_award_id":"PAPIME PE200116","funder_id":"https://openalex.org/F4320335100","funder_display_name":"Direcci\u00f3n General de Asuntos del Personal Acad\u00e9mico, Universidad Nacional Aut\u00f3noma de M\u00e9xico"}],"funders":[{"id":"https://openalex.org/F4320323401","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25"},{"id":"https://openalex.org/F4320335100","display_name":"Direcci\u00f3n General de Asuntos del Personal Acad\u00e9mico, Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25"},{"id":"https://openalex.org/F4320337011","display_name":"Instituto de Investigaciones Biom\u00e9dicas, Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2551556495.pdf","grobid_xml":"https://content.openalex.org/works/W2551556495.grobid-xml"},"referenced_works_count":43,"referenced_works":["https://openalex.org/W195533127","https://openalex.org/W390584165","https://openalex.org/W1493055596","https://openalex.org/W1531524766","https://openalex.org/W1581050290","https://openalex.org/W1903660083","https://openalex.org/W1963790256","https://openalex.org/W1971527053","https://openalex.org/W1975293246","https://openalex.org/W1983248350","https://openalex.org/W1983393839","https://openalex.org/W1988037271","https://openalex.org/W1988909822","https://openalex.org/W1991262449","https://openalex.org/W1991833480","https://openalex.org/W1997176810","https://openalex.org/W2006575776","https://openalex.org/W2009046773","https://openalex.org/W2018518196","https://openalex.org/W2032008870","https://openalex.org/W2035347370","https://openalex.org/W2036831677","https://openalex.org/W2039609876","https://openalex.org/W2060531713","https://openalex.org/W2064622661","https://openalex.org/W2066214356","https://openalex.org/W2075043416","https://openalex.org/W2089233806","https://openalex.org/W2096729078","https://openalex.org/W2105649494","https://openalex.org/W2117682071","https://openalex.org/W2135732933","https://openalex.org/W2149369282","https://openalex.org/W2151697120","https://openalex.org/W2157132743","https://openalex.org/W2163952039","https://openalex.org/W2164120866","https://openalex.org/W2167115266","https://openalex.org/W2170146596","https://openalex.org/W2214067381","https://openalex.org/W2272125237","https://openalex.org/W2472085920","https://openalex.org/W2506423325"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052"],"abstract_inverted_index":{"BACKGROUND:":[0],"Measuring":[1],"the":[2,30,39,42,57,75,80,96,108,145,171,191],"structural":[3,51,129],"diversity":[4,21,31,40,97,147,193],"of":[5,17,29,32,41,74,98,110,148,165,170,194],"compound":[6,115,149,195],"databases":[7],"is":[8,45,62,67,85,173,181],"relevant":[9],"in":[10,93,143,189],"drug":[11],"discovery":[12],"and":[13,53,65,118,124,131],"many":[14],"other":[15],"areas":[16],"chemistry.":[18],"Since":[19],"molecular":[20,24,43,49,104,127],"depends":[22],"on":[23],"representation,":[25],"comprehensive":[26],"chemoinformatic":[27],"analysis":[28],"libraries":[33,44,100],"uses":[34],"multiple":[35,103,153,199],"criteria.":[36],"For":[37],"instance,":[38],"typically":[46],"evaluated":[47],"employing":[48],"scaffolds,":[50,128],"fingerprints,":[52,130],"physicochemical":[54,132],"properties.":[55,133],"However,":[56],"assessment":[58],"with":[59,121],"each":[60],"criterion":[61],"analyzed":[63],"independently":[64],"it":[66],"not":[68],"straightforward":[69],"to":[70,91,112],"provide":[71],"an":[72],"evaluation":[73],"\"global":[76],"diversity\".":[77],"RESULTS:":[78],"Herein":[79],"Consensus":[81],"Diversity":[82,179],"Plot":[83,180],"(CDP)":[84],"proposed":[86],"as":[87],"a":[88,182],"novel":[89,183],"method":[90],"represent":[92,142],"low":[94],"dimensions":[95],"chemical":[99],"considering":[101],"simultaneously":[102],"representations.":[105],"We":[106],"illustrate":[107],"application":[109],"CDPs":[111,135,172],"classify":[113],"eight":[114],"data":[116,138,150,184,196],"sets":[117,151,197],"two":[119],"subsets":[120],"different":[122],"sizes":[123],"compositions":[125],"using":[126,152,160,198],"CONCLUSIONS:":[134],"are":[136],"general":[137],"mining":[139,185],"tools":[140],"that":[141,187],"two-dimensions":[144,190],"global":[146,192],"metrics.":[154,200],"These":[155],"plots":[156],"can":[157],"be":[158],"constructed":[159],"single":[161],"or":[162],"combined":[163],"measures":[164],"diversity.":[166],"An":[167],"online":[168],"version":[169],"freely":[174],"available":[175],"at:":[176],"https://consensusdiversityplots-difacquim-unam.shinyapps.io/RscriptsCDPlots/.Graphical":[177],"AbstractConsensus":[178],"tool":[186],"represents":[188]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":15},{"year":2023,"cited_by_count":10},{"year":2022,"cited_by_count":10},{"year":2021,"cited_by_count":9},{"year":2020,"cited_by_count":9},{"year":2019,"cited_by_count":12},{"year":2018,"cited_by_count":8},{"year":2017,"cited_by_count":8}],"updated_date":"2026-08-30T07:30:35.949966","created_date":"2025-10-10T00:00:00"}
