{"id":"https://openalex.org/W2539015190","doi":"https://doi.org/10.1186/s13321-016-0171-1","title":"NEEMP: software for validation, accurate calculation and fast parameterization of EEM charges","display_name":"NEEMP: software for validation, accurate calculation and fast parameterization of EEM charges","publication_year":2016,"publication_date":"2016-10-17","ids":{"openalex":"https://openalex.org/W2539015190","doi":"https://doi.org/10.1186/s13321-016-0171-1","mag":"2539015190","pmid":"https://pubmed.ncbi.nlm.nih.gov/27803746"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-016-0171-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-016-0171-1","pdf_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/s13321-016-0171-1","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/s13321-016-0171-1","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5040326443","display_name":"Tom\u00e1\u0161 Ra\u010dek","orcid":"https://orcid.org/0000-0002-0296-2452"},"institutions":[{"id":"https://openalex.org/I1310815967","display_name":"Central European Institute of Technology","ror":"https://ror.org/01p7k1986","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967"]},{"id":"https://openalex.org/I4210090417","display_name":"Central European Institute of Technology \u2013 Masaryk University","ror":"https://ror.org/009nz6031","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967","https://openalex.org/I21449261","https://openalex.org/I4210090417"]}],"countries":["CZ"],"is_corresponding":true,"raw_author_name":"Tom\u00e1\u0161 Ra\u010dek","raw_affiliation_strings":["CEITEC - Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00 Brno, Czech Republic ; National Centre for Biomolecular Research, Faculty of Science, Masaryk University Brno, Kamenice 5, 625 00 Brno, Czech Republic ; Faculty of Informatics, Masaryk University Brno, Botanick\u00e1 68a, 602 00 Brno, Czech Republic","CEITEC \u2013 Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00, Brno, Czech Republic"],"affiliations":[{"raw_affiliation_string":"CEITEC - Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00 Brno, Czech Republic ; National Centre for Biomolecular Research, Faculty of Science, Masaryk University Brno, Kamenice 5, 625 00 Brno, Czech Republic ; Faculty of Informatics, Masaryk University Brno, Botanick\u00e1 68a, 602 00 Brno, Czech Republic","institution_ids":[]},{"raw_affiliation_string":"CEITEC \u2013 Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00, Brno, Czech Republic","institution_ids":["https://openalex.org/I1310815967","https://openalex.org/I4210090417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112021379","display_name":"Jana Paz\u00farikov\u00e1","orcid":null},"institutions":[{"id":"https://openalex.org/I4210090417","display_name":"Central European Institute of Technology \u2013 Masaryk University","ror":"https://ror.org/009nz6031","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967","https://openalex.org/I21449261","https://openalex.org/I4210090417"]},{"id":"https://openalex.org/I1310815967","display_name":"Central European Institute of Technology","ror":"https://ror.org/01p7k1986","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Jana Paz\u00farikov\u00e1","raw_affiliation_strings":["CEITEC - Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00 Brno, Czech Republic ; Faculty of Informatics, Masaryk University Brno, Botanick\u00e1 68a, 602 00 Brno, Czech Republic","CEITEC \u2013 Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00, Brno, Czech Republic"],"affiliations":[{"raw_affiliation_string":"CEITEC - Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00 Brno, Czech Republic ; Faculty of Informatics, Masaryk University Brno, Botanick\u00e1 68a, 602 00 Brno, Czech Republic","institution_ids":[]},{"raw_affiliation_string":"CEITEC \u2013 Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00, Brno, Czech Republic","institution_ids":["https://openalex.org/I1310815967","https://openalex.org/I4210090417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051424845","display_name":"Radka Svobodov\u00e1 Va\u0159ekov\u00e1","orcid":"https://orcid.org/0000-0002-3840-8760"},"institutions":[{"id":"https://openalex.org/I4210090417","display_name":"Central European Institute of Technology \u2013 Masaryk University","ror":"https://ror.org/009nz6031","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967","https://openalex.org/I21449261","https://openalex.org/I4210090417"]},{"id":"https://openalex.org/I1310815967","display_name":"Central European Institute of Technology","ror":"https://ror.org/01p7k1986","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Radka Svobodov\u00e1 Va\u0159ekov\u00e1","raw_affiliation_strings":["CEITEC - Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00 Brno, Czech Republic ; National Centre for Biomolecular Research, Faculty of Science, Masaryk University Brno, Kamenice 5, 625 00 Brno, Czech Republic","CEITEC \u2013 Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00, Brno, Czech Republic"],"affiliations":[{"raw_affiliation_string":"CEITEC - Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00 Brno, Czech Republic ; National Centre for Biomolecular Research, Faculty of Science, Masaryk University Brno, Kamenice 5, 625 00 Brno, Czech Republic","institution_ids":[]},{"raw_affiliation_string":"CEITEC \u2013 Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00, Brno, Czech Republic","institution_ids":["https://openalex.org/I1310815967","https://openalex.org/I4210090417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031789769","display_name":"Stanislav Geidl","orcid":null},"institutions":[{"id":"https://openalex.org/I4210090417","display_name":"Central European Institute of Technology \u2013 Masaryk University","ror":"https://ror.org/009nz6031","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967","https://openalex.org/I21449261","https://openalex.org/I4210090417"]},{"id":"https://openalex.org/I1310815967","display_name":"Central European Institute of Technology","ror":"https://ror.org/01p7k1986","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Stanislav Geidl","raw_affiliation_strings":["CEITEC - Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00 Brno, Czech Republic ; National Centre for Biomolecular Research, Faculty of Science, Masaryk University Brno, Kamenice 5, 625 00 Brno, Czech Republic","CEITEC \u2013 Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00, Brno, Czech Republic"],"affiliations":[{"raw_affiliation_string":"CEITEC - Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00 Brno, Czech Republic ; National Centre for Biomolecular Research, Faculty of Science, Masaryk University Brno, Kamenice 5, 625 00 Brno, Czech Republic","institution_ids":[]},{"raw_affiliation_string":"CEITEC \u2013 Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00, Brno, Czech Republic","institution_ids":["https://openalex.org/I1310815967","https://openalex.org/I4210090417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008958321","display_name":"Ale\u0161 K\u0159enek","orcid":"https://orcid.org/0000-0002-3395-3196"},"institutions":[{"id":"https://openalex.org/I4210090417","display_name":"Central European Institute of Technology \u2013 Masaryk University","ror":"https://ror.org/009nz6031","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967","https://openalex.org/I21449261","https://openalex.org/I4210090417"]},{"id":"https://openalex.org/I1310815967","display_name":"Central European Institute of Technology","ror":"https://ror.org/01p7k1986","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Ale\u0161 K\u0159enek","raw_affiliation_strings":["CEITEC - Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00 Brno, Czech Republic ; Institute of Computer Science, Masaryk University Brno, Botanick\u00e1 68a, 602 00 Brno, Czech Republic","CEITEC \u2013 Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00, Brno, Czech Republic"],"affiliations":[{"raw_affiliation_string":"CEITEC - Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00 Brno, Czech Republic ; Institute of Computer Science, Masaryk University Brno, Botanick\u00e1 68a, 602 00 Brno, Czech Republic","institution_ids":[]},{"raw_affiliation_string":"CEITEC \u2013 Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00, Brno, Czech Republic","institution_ids":["https://openalex.org/I1310815967","https://openalex.org/I4210090417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081506151","display_name":"Francesco Luca Falginella","orcid":null},"institutions":[{"id":"https://openalex.org/I4210090417","display_name":"Central European Institute of Technology \u2013 Masaryk University","ror":"https://ror.org/009nz6031","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967","https://openalex.org/I21449261","https://openalex.org/I4210090417"]},{"id":"https://openalex.org/I1310815967","display_name":"Central European Institute of Technology","ror":"https://ror.org/01p7k1986","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Francesco Luca Falginella","raw_affiliation_strings":["CEITEC - Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00 Brno, Czech Republic","CEITEC \u2013 Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00, Brno, Czech Republic"],"affiliations":[{"raw_affiliation_string":"CEITEC - Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00 Brno, Czech Republic","institution_ids":["https://openalex.org/I1310815967","https://openalex.org/I4210090417"]},{"raw_affiliation_string":"CEITEC \u2013 Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00, Brno, Czech Republic","institution_ids":["https://openalex.org/I1310815967","https://openalex.org/I4210090417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025266471","display_name":"Vladim\u00edr Horsk\u00fd","orcid":"https://orcid.org/0000-0002-9252-5386"},"institutions":[{"id":"https://openalex.org/I4210090417","display_name":"Central European Institute of Technology \u2013 Masaryk University","ror":"https://ror.org/009nz6031","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967","https://openalex.org/I21449261","https://openalex.org/I4210090417"]},{"id":"https://openalex.org/I1310815967","display_name":"Central European Institute of Technology","ror":"https://ror.org/01p7k1986","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Vladim\u00edr Horsk\u00fd","raw_affiliation_strings":["CEITEC - Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00 Brno, Czech Republic ; Faculty of Informatics, Masaryk University Brno, Botanick\u00e1 68a, 602 00 Brno, Czech Republic","CEITEC \u2013 Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00, Brno, Czech Republic"],"affiliations":[{"raw_affiliation_string":"CEITEC - Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00 Brno, Czech Republic ; Faculty of Informatics, Masaryk University Brno, Botanick\u00e1 68a, 602 00 Brno, Czech Republic","institution_ids":[]},{"raw_affiliation_string":"CEITEC \u2013 Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00, Brno, Czech Republic","institution_ids":["https://openalex.org/I1310815967","https://openalex.org/I4210090417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047914435","display_name":"V\u00e1clav Hejret","orcid":null},"institutions":[{"id":"https://openalex.org/I4210090417","display_name":"Central European Institute of Technology \u2013 Masaryk University","ror":"https://ror.org/009nz6031","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967","https://openalex.org/I21449261","https://openalex.org/I4210090417"]},{"id":"https://openalex.org/I1310815967","display_name":"Central European Institute of Technology","ror":"https://ror.org/01p7k1986","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"V\u00e1clav Hejret","raw_affiliation_strings":["CEITEC - Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00 Brno, Czech Republic","CEITEC \u2013 Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00, Brno, Czech Republic"],"affiliations":[{"raw_affiliation_string":"CEITEC - Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00 Brno, Czech Republic","institution_ids":["https://openalex.org/I1310815967","https://openalex.org/I4210090417"]},{"raw_affiliation_string":"CEITEC \u2013 Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00, Brno, Czech Republic","institution_ids":["https://openalex.org/I1310815967","https://openalex.org/I4210090417"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5061853775","display_name":"Jaroslav Ko\u010da","orcid":"https://orcid.org/0000-0002-2780-4901"},"institutions":[{"id":"https://openalex.org/I1310815967","display_name":"Central European Institute of Technology","ror":"https://ror.org/01p7k1986","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967"]},{"id":"https://openalex.org/I4210090417","display_name":"Central European Institute of Technology \u2013 Masaryk University","ror":"https://ror.org/009nz6031","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967","https://openalex.org/I21449261","https://openalex.org/I4210090417"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Jaroslav Ko\u010da","raw_affiliation_strings":["CEITEC - Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00 Brno, Czech Republic ; National Centre for Biomolecular Research, Faculty of Science, Masaryk University Brno, Kamenice 5, 625 00 Brno, Czech Republic","CEITEC \u2013 Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00, Brno, Czech Republic"],"affiliations":[{"raw_affiliation_string":"CEITEC - Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00 Brno, Czech Republic ; National Centre for Biomolecular Research, Faculty of Science, Masaryk University Brno, Kamenice 5, 625 00 Brno, Czech Republic","institution_ids":[]},{"raw_affiliation_string":"CEITEC \u2013 Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00, Brno, Czech Republic","institution_ids":["https://openalex.org/I1310815967","https://openalex.org/I4210090417"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5040326443"],"corresponding_institution_ids":["https://openalex.org/I1310815967","https://openalex.org/I4210090417"],"apc_list":{"value":1290,"currency":"GBP","value_usd":1582},"apc_paid":{"value":1290,"currency":"GBP","value_usd":1582},"fwci":0.3594,"has_fulltext":true,"cited_by_count":11,"citation_normalized_percentile":{"value":0.69129466,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"8","issue":"1","first_page":"57","last_page":"57"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13013","display_name":"Free Radicals and Antioxidants","score":0.992900013923645,"subfield":{"id":"https://openalex.org/subfields/1605","display_name":"Organic Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10798","display_name":"Crystallography and molecular interactions","score":0.989799976348877,"subfield":{"id":"https://openalex.org/subfields/1606","display_name":"Physical and Theoretical Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/parameterized-complexity","display_name":"Parameterized complexity","score":0.5965136885643005},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5947519540786743},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5818936824798584},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5315969586372375},{"id":"https://openalex.org/keywords/charge","display_name":"Charge (physics)","score":0.45652854442596436},{"id":"https://openalex.org/keywords/quality","display_name":"Quality (philosophy)","score":0.4525243639945984},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.405720055103302},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.1275641918182373}],"concepts":[{"id":"https://openalex.org/C165464430","wikidata":"https://www.wikidata.org/wiki/Q1570441","display_name":"Parameterized complexity","level":2,"score":0.5965136885643005},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5947519540786743},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5818936824798584},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5315969586372375},{"id":"https://openalex.org/C188082385","wikidata":"https://www.wikidata.org/wiki/Q73792","display_name":"Charge (physics)","level":2,"score":0.45652854442596436},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.4525243639945984},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.405720055103302},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.1275641918182373},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1186/s13321-016-0171-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-016-0171-1","pdf_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/s13321-016-0171-1","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:27803746","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27803746","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:5067907","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5067907","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"J Cheminform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13321-016-0171-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-016-0171-1","pdf_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/s13321-016-0171-1","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.47999998927116394,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G2973203387","display_name":null,"funder_award_id":"CEITEC 2020 (LQ1601)","funder_id":"https://openalex.org/F4320323870","funder_display_name":"Central European Institute of Technology"},{"id":"https://openalex.org/G3496015395","display_name":null,"funder_award_id":"LQ1601","funder_id":"https://openalex.org/F4320323870","funder_display_name":"Central European Institute of Technology"},{"id":"https://openalex.org/G3974687403","display_name":null,"funder_award_id":"CEITEC 2020 (LQ1601)","funder_id":"https://openalex.org/F4320321005","funder_display_name":"Ministerstvo \u0160kolstv\u00ed, Ml\u00e1de\u017ee a T\u011blov\u00fdchovy"},{"id":"https://openalex.org/G4025459944","display_name":null,"funder_award_id":"LQ160","funder_id":"https://openalex.org/F4320321005","funder_display_name":"Ministerstvo \u0160kolstv\u00ed, Ml\u00e1de\u017ee a T\u011blov\u00fdchovy"},{"id":"https://openalex.org/G5066036532","display_name":null,"funder_award_id":"LQ1601","funder_id":"https://openalex.org/F4320321005","funder_display_name":"Ministerstvo \u0160kolstv\u00ed, Ml\u00e1de\u017ee a T\u011blov\u00fdchovy"},{"id":"https://openalex.org/G5108073634","display_name":null,"funder_award_id":"CEITEC 2020","funder_id":"https://openalex.org/F4320321005","funder_display_name":"Ministerstvo \u0160kolstv\u00ed, Ml\u00e1de\u017ee a T\u011blov\u00fdchovy"},{"id":"https://openalex.org/G5398105801","display_name":null,"funder_award_id":"(LQ1601)","funder_id":"https://openalex.org/F4320323870","funder_display_name":"Central European Institute of Technology"},{"id":"https://openalex.org/G809850909","display_name":null,"funder_award_id":"2020 (LQ1601)","funder_id":"https://openalex.org/F4320323870","funder_display_name":"Central European Institute of Technology"}],"funders":[{"id":"https://openalex.org/F4320321005","display_name":"Ministerstvo \u0160kolstv\u00ed, Ml\u00e1de\u017ee a T\u011blov\u00fdchovy","ror":"https://ror.org/037n8p820"},{"id":"https://openalex.org/F4320323870","display_name":"Central European Institute of Technology","ror":"https://ror.org/01p7k1986"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2539015190.pdf","grobid_xml":"https://content.openalex.org/works/W2539015190.grobid-xml"},"referenced_works_count":57,"referenced_works":["https://openalex.org/W370776269","https://openalex.org/W1480928214","https://openalex.org/W1552874028","https://openalex.org/W1576994318","https://openalex.org/W1601495365","https://openalex.org/W1650728208","https://openalex.org/W1966220565","https://openalex.org/W1968392598","https://openalex.org/W1971458166","https://openalex.org/W1979680610","https://openalex.org/W1983635605","https://openalex.org/W1984845825","https://openalex.org/W1987446850","https://openalex.org/W1988808892","https://openalex.org/W1993383767","https://openalex.org/W1995808589","https://openalex.org/W1996295408","https://openalex.org/W1997401744","https://openalex.org/W1998189465","https://openalex.org/W2002261888","https://openalex.org/W2008175766","https://openalex.org/W2008517160","https://openalex.org/W2009313526","https://openalex.org/W2011810806","https://openalex.org/W2012971796","https://openalex.org/W2026910177","https://openalex.org/W2033293438","https://openalex.org/W2035221724","https://openalex.org/W2040496005","https://openalex.org/W2049643865","https://openalex.org/W2051469879","https://openalex.org/W2051622977","https://openalex.org/W2072537419","https://openalex.org/W2078750399","https://openalex.org/W2079391392","https://openalex.org/W2083992909","https://openalex.org/W2085966856","https://openalex.org/W2088666833","https://openalex.org/W2089188080","https://openalex.org/W2097475255","https://openalex.org/W2102537419","https://openalex.org/W2107029002","https://openalex.org/W2112449769","https://openalex.org/W2112803111","https://openalex.org/W2145374174","https://openalex.org/W2147993766","https://openalex.org/W2151334055","https://openalex.org/W2160562679","https://openalex.org/W2163245246","https://openalex.org/W2169678694","https://openalex.org/W2170006871","https://openalex.org/W2171009415","https://openalex.org/W2183132306","https://openalex.org/W2219719639","https://openalex.org/W2890534020","https://openalex.org/W4229666556","https://openalex.org/W4233998925"],"related_works":["https://openalex.org/W2051058708","https://openalex.org/W154868527","https://openalex.org/W1494268238","https://openalex.org/W1983207144","https://openalex.org/W2490706771","https://openalex.org/W2480116122","https://openalex.org/W1976468483","https://openalex.org/W1516574938","https://openalex.org/W2563912921","https://openalex.org/W1869907491"],"abstract_inverted_index":{"We":[0],"provide":[1],"the":[2,9,14],"software":[3,17],"tool":[4],"NEEMP,":[5],"which":[6],"is":[7,33],"to":[8,57],"best":[10],"of":[11],"our":[12],"knowledge":[13],"only":[15],"available":[16],"package":[18],"that":[19],"enables":[20],"EEM":[21,24,53],"parameterization":[22,31],"and":[23,40],"parameter":[25,54],"set":[26],"validation.":[27],"Additionally,":[28],"its":[29],"DE-MIN":[30],"method":[32],"an":[34],"innovative":[35],"approach,":[36],"developed":[37],"by":[38],"ourselves":[39],"first":[41],"published":[42],"in":[43],"this":[44],"work.":[45],"In":[46],"addition,":[47],"we":[48],"also":[49],"prepared":[50],"four":[51],"high-quality":[52],"sets":[55],"tailored":[56],"ligand":[58],"molecules.Graphical":[59],"abstract.":[60]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2015,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
