{"id":"https://openalex.org/W2530855438","doi":"https://doi.org/10.1186/s13321-016-0170-2","title":"The Open Spectral Database: an open platform for sharing and searching spectral data","display_name":"The Open Spectral Database: an open platform for sharing and searching spectral data","publication_year":2016,"publication_date":"2016-10-14","ids":{"openalex":"https://openalex.org/W2530855438","doi":"https://doi.org/10.1186/s13321-016-0170-2","mag":"2530855438","pmid":"https://pubmed.ncbi.nlm.nih.gov/27795739"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-016-0170-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-016-0170-2","pdf_url":null,"source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1186/s13321-016-0170-2","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5064054066","display_name":"Stuart Chalk","orcid":"https://orcid.org/0000-0002-0703-7776"},"institutions":[{"id":"https://openalex.org/I11874761","display_name":"University of North Florida","ror":"https://ror.org/01j903a45","country_code":"US","type":"education","lineage":["https://openalex.org/I11874761"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Stuart J. Chalk","raw_affiliation_strings":["Department of Chemistry, University of North Florida, Jacksonville, FL 32224 USA","Department of Chemistry, University of North Florida, Jacksonville, FL, 32224, USA"],"raw_orcid":"https://orcid.org/0000-0002-0703-7776","affiliations":[{"raw_affiliation_string":"Department of Chemistry, University of North Florida, Jacksonville, FL 32224 USA","institution_ids":["https://openalex.org/I11874761"]},{"raw_affiliation_string":"Department of Chemistry, University of North Florida, Jacksonville, FL, 32224, USA","institution_ids":["https://openalex.org/I11874761"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5064054066"],"corresponding_institution_ids":["https://openalex.org/I11874761"],"apc_list":{"value":2390,"currency":"USD","value_usd":2390},"apc_paid":{"value":2390,"currency":"USD","value_usd":2390},"fwci":1.8723,"has_fulltext":false,"cited_by_count":12,"citation_normalized_percentile":{"value":0.85688983,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":98},"biblio":{"volume":"8","issue":"1","first_page":"55","last_page":"55"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T14249","display_name":"Water Quality Monitoring and Analysis","score":0.29100000858306885,"subfield":{"id":"https://openalex.org/subfields/2311","display_name":"Waste Management and Disposal"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T14249","display_name":"Water Quality Monitoring and Analysis","score":0.29100000858306885,"subfield":{"id":"https://openalex.org/subfields/2311","display_name":"Waste Management and Disposal"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.09560000151395798,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12327","display_name":"Various Chemistry Research Topics","score":0.050700001418590546,"subfield":{"id":"https://openalex.org/subfields/1606","display_name":"Physical and Theoretical Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8632912635803223},{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.6329749822616577},{"id":"https://openalex.org/keywords/scripting-language","display_name":"Scripting language","score":0.618952751159668},{"id":"https://openalex.org/keywords/open-data","display_name":"Open data","score":0.5883002281188965},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.5679398775100708},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5187245011329651},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4647276699542999},{"id":"https://openalex.org/keywords/application-programming-interface","display_name":"Application programming interface","score":0.46388038992881775},{"id":"https://openalex.org/keywords/download","display_name":"Download","score":0.43548157811164856},{"id":"https://openalex.org/keywords/codebase","display_name":"Codebase","score":0.4305216670036316},{"id":"https://openalex.org/keywords/relational-database","display_name":"Relational database","score":0.4282943606376648},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.4282607436180115},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.38459542393684387},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.12670528888702393}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8632912635803223},{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.6329749822616577},{"id":"https://openalex.org/C61423126","wikidata":"https://www.wikidata.org/wiki/Q187432","display_name":"Scripting language","level":2,"score":0.618952751159668},{"id":"https://openalex.org/C2780535194","wikidata":"https://www.wikidata.org/wiki/Q309901","display_name":"Open data","level":2,"score":0.5883002281188965},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5679398775100708},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5187245011329651},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4647276699542999},{"id":"https://openalex.org/C99613125","wikidata":"https://www.wikidata.org/wiki/Q165194","display_name":"Application programming interface","level":2,"score":0.46388038992881775},{"id":"https://openalex.org/C2780154274","wikidata":"https://www.wikidata.org/wiki/Q7126717","display_name":"Download","level":2,"score":0.43548157811164856},{"id":"https://openalex.org/C51929080","wikidata":"https://www.wikidata.org/wiki/Q2425187","display_name":"Codebase","level":3,"score":0.4305216670036316},{"id":"https://openalex.org/C5655090","wikidata":"https://www.wikidata.org/wiki/Q192588","display_name":"Relational database","level":2,"score":0.4282943606376648},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.4282607436180115},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.38459542393684387},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.12670528888702393}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/s13321-016-0170-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-016-0170-2","pdf_url":null,"source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:27795739","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27795739","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:5065085","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5065085","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Cheminform","raw_type":"Text"},{"id":"pmh:oai:digitalcommons.unf.edu:unf_faculty_publications-3060","is_oa":false,"landing_page_url":"https://digitalcommons.unf.edu/unf_faculty_publications/2061","pdf_url":null,"source":{"id":"https://openalex.org/S4306401214","display_name":"University of North Florida Digital Commons (University of North Florida)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I11874761","host_organization_name":"University of North Florida","host_organization_lineage":["https://openalex.org/I11874761"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"UNF Faculty Research and Scholarship","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1186/s13321-016-0170-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-016-0170-2","pdf_url":null,"source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4699999988079071,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":12,"referenced_works":["https://openalex.org/W82821577","https://openalex.org/W1986071441","https://openalex.org/W1993610755","https://openalex.org/W2001291669","https://openalex.org/W2032355003","https://openalex.org/W2044856725","https://openalex.org/W2074553630","https://openalex.org/W2117403639","https://openalex.org/W2159266102","https://openalex.org/W2242459625","https://openalex.org/W2530682065","https://openalex.org/W3216710323"],"related_works":["https://openalex.org/W4210714572","https://openalex.org/W236697550","https://openalex.org/W2966393348","https://openalex.org/W2603924900","https://openalex.org/W4240827867","https://openalex.org/W2126664691","https://openalex.org/W3179394763","https://openalex.org/W3139442070","https://openalex.org/W4287271791","https://openalex.org/W3195185499"],"abstract_inverted_index":{"BACKGROUND:":[0],"A":[1],"number":[2],"of":[3,63,67,85,175,212,245],"websites":[4,239],"make":[5,272],"available":[6,137,148,192,276],"spectral":[7,25,34,142],"data":[8,35,46,70,248,275],"for":[9,138,173,198,240,277],"download":[10],"(typically":[11],"as":[12],"JCAMP-DX":[13,51,64],"text":[14],"files)":[15],"and":[16,31,40,80,87,107,125,132,147,158,171,195,206,225,243,280],"one":[17],"(ChemSpider)":[18],"that":[19,60],"also":[20],"allows":[21,61],"users":[22],"to":[23,42,127,140,149,200,234,249,271],"contribute":[24,207],"files.":[26],"As":[27],"a":[28,57,93,213,217,221,226],"result,":[29],"searching":[30,74],"retrieving":[32],"such":[33],"can":[36],"be":[37,269],"time":[38],"consuming,":[39],"difficult":[41],"reuse":[43],"if":[44],"the":[45,50,68,98,134,150,156,187,202,232,250],"is":[47,54,56,81,108,136,196,256],"compressed":[48],"in":[49,71,83,183,264],"file.":[52],"What":[53],"needed":[55],"single":[58],"resource":[59,96],"submission":[62,174],"files,":[65],"export":[66,162],"raw":[69],"multiple":[72,77],"formats,":[73,163],"based":[75,238],"on":[76,120],"chemical":[78,247,274],"identifiers,":[79],"open":[82,113,117,123,126,197,246],"terms":[84],"license":[86],"access.":[88],"To":[89],"address":[90],"these":[91],"issues":[92],"new":[94],"online":[95],"called":[97],"Open":[99],"Spectral":[100],"Database":[101],"(OSDB)":[102],"http://osdb.info/":[103],"has":[104],"been":[105],"developed":[106],"now":[109],"available.":[110],"Built":[111],"using":[112,116],"source":[114],"tools,":[115],"code":[118,227],"(hosted":[119],"GitHub),":[121],"providing":[122],"data,":[124,143],"community":[128,251],"input":[129],"about":[130],"design":[131],"functionality,":[133],"OSDB":[135,179],"anyone":[139],"submit":[141,204],"making":[144],"it":[145],"searchable":[146],"scientific":[151],"community.":[152],"This":[153],"paper":[154],"details":[155],"concept":[157],"coding,":[159],"internal":[160],"architecture,":[161],"Representational":[164],"State":[165],"Transfer":[166],"(REST)":[167],"Application":[168],"Programming":[169],"Interface":[170],"options":[172],"data.":[176],"RESULTS:":[177],"The":[178,210],"website":[180],"went":[181],"live":[182],"November":[184],"2015.":[185],"Concurrently,":[186],"GitHub":[188],"repository":[189,228],"was":[190],"made":[191],"at":[193,252],"https://github.com/stuchalk/OSDB/,":[194],"collaborators":[199],"join":[201],"project,":[203],"issues,":[205],"code.":[208],"CONCLUSION:":[209],"combination":[211],"scripting":[214,266],"environment":[215],"(PHPStorm),":[216],"PHP":[218],"Framework":[219],"(CakePHP),":[220],"relational":[222],"database":[223],"(MySQL)":[224],"(GitHub)":[229],"provides":[230],"all":[231,253],"capabilities":[233],"easily":[235],"develop":[236],"REST":[237],"ingestion,":[241],"curation":[242],"exposure":[244],"levels.":[254],"It":[255],"hoped":[257],"this":[258],"software":[259],"stack":[260],"(or":[261],"equivalent":[262],"ones":[263],"other":[265],"languages)":[267],"will":[268],"leveraged":[270],"more":[273],"both":[278],"humans":[279],"computers.":[281]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":3},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":4}],"updated_date":"2026-09-02T07:38:04.252551","created_date":"2025-10-10T00:00:00"}
