{"id":"https://openalex.org/W2530682065","doi":"https://doi.org/10.1186/s13321-016-0168-9","title":"SciData: a data model and ontology for semantic representation of scientific data","display_name":"SciData: a data model and ontology for semantic representation of scientific data","publication_year":2016,"publication_date":"2016-10-14","ids":{"openalex":"https://openalex.org/W2530682065","doi":"https://doi.org/10.1186/s13321-016-0168-9","mag":"2530682065","pmid":"https://pubmed.ncbi.nlm.nih.gov/27795738"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-016-0168-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-016-0168-9","pdf_url":null,"source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1186/s13321-016-0168-9","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5064054066","display_name":"Stuart Chalk","orcid":"https://orcid.org/0000-0002-0703-7776"},"institutions":[{"id":"https://openalex.org/I11874761","display_name":"University of North Florida","ror":"https://ror.org/01j903a45","country_code":"US","type":"education","lineage":["https://openalex.org/I11874761"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Stuart J. Chalk","raw_affiliation_strings":["Department of Chemistry, University of North Florida, Jacksonville, FL 32224 USA","Department of Chemistry, University of North Florida, Jacksonville, FL, 32224, USA"],"raw_orcid":"https://orcid.org/0000-0002-0703-7776","affiliations":[{"raw_affiliation_string":"Department of Chemistry, University of North Florida, Jacksonville, FL 32224 USA","institution_ids":["https://openalex.org/I11874761"]},{"raw_affiliation_string":"Department of Chemistry, University of North Florida, Jacksonville, FL, 32224, USA","institution_ids":["https://openalex.org/I11874761"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5064054066"],"corresponding_institution_ids":["https://openalex.org/I11874761"],"apc_list":{"value":2390,"currency":"USD","value_usd":2390},"apc_paid":{"value":2390,"currency":"USD","value_usd":2390},"fwci":0.778,"has_fulltext":false,"cited_by_count":12,"citation_normalized_percentile":{"value":0.79211013,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":97},"biblio":{"volume":"8","issue":"1","first_page":"54","last_page":"54"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12527","display_name":"Chemistry and Stereochemistry Studies","score":0.9763000011444092,"subfield":{"id":"https://openalex.org/subfields/1605","display_name":"Organic Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12527","display_name":"Chemistry and Stereochemistry Studies","score":0.9763000011444092,"subfield":{"id":"https://openalex.org/subfields/1605","display_name":"Organic Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9632999897003174,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9581999778747559,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8321728706359863},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.6503117680549622},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.6093625426292419},{"id":"https://openalex.org/keywords/data-model","display_name":"Data model (GIS)","score":0.5713625550270081},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5285324454307556},{"id":"https://openalex.org/keywords/semantics","display_name":"Semantics (computer science)","score":0.4970283806324005},{"id":"https://openalex.org/keywords/external-data-representation","display_name":"External Data Representation","score":0.48784565925598145},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.48202526569366455},{"id":"https://openalex.org/keywords/semantic-data-model","display_name":"Semantic data model","score":0.4569154381752014},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.447780042886734},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.44339942932128906},{"id":"https://openalex.org/keywords/data-mapping","display_name":"Data mapping","score":0.4410092234611511},{"id":"https://openalex.org/keywords/data-modeling","display_name":"Data modeling","score":0.42700910568237305},{"id":"https://openalex.org/keywords/notation","display_name":"Notation","score":0.41719380021095276},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.35111570358276367},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.25327837467193604},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.18973812460899353},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.089161217212677}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8321728706359863},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.6503117680549622},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.6093625426292419},{"id":"https://openalex.org/C100463513","wikidata":"https://www.wikidata.org/wiki/Q5227322","display_name":"Data model (GIS)","level":2,"score":0.5713625550270081},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5285324454307556},{"id":"https://openalex.org/C184337299","wikidata":"https://www.wikidata.org/wiki/Q1437428","display_name":"Semantics (computer science)","level":2,"score":0.4970283806324005},{"id":"https://openalex.org/C116409475","wikidata":"https://www.wikidata.org/wiki/Q1385056","display_name":"External Data Representation","level":2,"score":0.48784565925598145},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.48202526569366455},{"id":"https://openalex.org/C90312973","wikidata":"https://www.wikidata.org/wiki/Q7449052","display_name":"Semantic data model","level":2,"score":0.4569154381752014},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.447780042886734},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.44339942932128906},{"id":"https://openalex.org/C137314826","wikidata":"https://www.wikidata.org/wiki/Q2330408","display_name":"Data mapping","level":2,"score":0.4410092234611511},{"id":"https://openalex.org/C67186912","wikidata":"https://www.wikidata.org/wiki/Q367664","display_name":"Data modeling","level":2,"score":0.42700910568237305},{"id":"https://openalex.org/C45357846","wikidata":"https://www.wikidata.org/wiki/Q2001982","display_name":"Notation","level":2,"score":0.41719380021095276},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.35111570358276367},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.25327837467193604},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.18973812460899353},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.089161217212677},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C94375191","wikidata":"https://www.wikidata.org/wiki/Q11205","display_name":"Arithmetic","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/s13321-016-0168-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-016-0168-9","pdf_url":null,"source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:27795738","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27795738","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:5064921","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5064921","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Cheminform","raw_type":"Text"},{"id":"pmh:oai:digitalcommons.unf.edu:unf_faculty_publications-3061","is_oa":false,"landing_page_url":"https://digitalcommons.unf.edu/unf_faculty_publications/2062","pdf_url":null,"source":{"id":"https://openalex.org/S4306401214","display_name":"University of North Florida Digital Commons (University of North Florida)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I11874761","host_organization_name":"University of North Florida","host_organization_lineage":["https://openalex.org/I11874761"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"UNF Faculty Research and Scholarship","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1186/s13321-016-0168-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-016-0168-9","pdf_url":null,"source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6499999761581421,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":17,"referenced_works":["https://openalex.org/W580305261","https://openalex.org/W633220716","https://openalex.org/W1548849615","https://openalex.org/W1664954303","https://openalex.org/W1977064288","https://openalex.org/W2017822309","https://openalex.org/W2070942956","https://openalex.org/W2134148450","https://openalex.org/W2144573571","https://openalex.org/W2240521982","https://openalex.org/W2315318154","https://openalex.org/W2522203795","https://openalex.org/W2526279055","https://openalex.org/W4206550259","https://openalex.org/W4251824421","https://openalex.org/W4255341243","https://openalex.org/W4405392018"],"related_works":["https://openalex.org/W2523648043","https://openalex.org/W2324728354","https://openalex.org/W2393185060","https://openalex.org/W2357389193","https://openalex.org/W2946081857","https://openalex.org/W2534416911","https://openalex.org/W2371105387","https://openalex.org/W1600455452","https://openalex.org/W2021402588","https://openalex.org/W1636990136"],"abstract_inverted_index":{"With":[0],"the":[1,43,79,121],"move":[2],"toward":[3],"global,":[4],"Internet":[5],"enabled":[6],"science":[7],"there":[8],"is":[9,34],"an":[10,38,71],"inherent":[11],"need":[12],"to":[13,36,63,100],"capture,":[14],"store,":[15],"aggregate":[16],"and":[17,70,102],"search":[18],"scientific":[19,47,57,82,128],"data":[20,27,54,58,64,83,98,105,129],"across":[21],"a":[22,30,52,127],"large":[23],"corpus":[24],"of":[25,41,46,78,81,96],"heterogeneous":[26],"silos.":[28],"As":[29],"result,":[31],"standards":[32],"development":[33],"needed":[35],"create":[37],"infrastructure":[39],"capable":[40],"representing":[42],"diverse":[44],"nature":[45],"data.":[48],"This":[49],"paper":[50],"describes":[51],"fundamental":[53],"model":[55,99],"for":[56,113],"that":[59,74],"can":[60,92],"be":[61,93],"applied":[62],"currently":[65],"stored":[66],"in":[67,125],"any":[68],"format,":[69],"associated":[72],"ontology":[73],"affords":[75],"semantic":[76],"representation":[77],"structure":[80],"(and":[84],"its":[85],"metadata),":[86],"upon":[87],"which":[88],"discipline":[89],"specific":[90],"semantics":[91],"applied.":[94],"Application":[95],"this":[97],"experimental":[101],"computational":[103],"chemistry":[104],"are":[106,118],"presented,":[107],"implemented":[108],"using":[109],"JavaScript":[110],"Object":[111],"Notation":[112],"Linked":[114],"Data.":[115],"Full":[116],"examples":[117],"available":[119],"at":[120],"project":[122],"website":[123],"(Chalk":[124],"SciData:":[126],"model.":[130],"http://stuchalk.github.io/scidata/,":[131],"2016).":[132]},"counts_by_year":[{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":1}],"updated_date":"2026-09-03T10:48:47.769340","created_date":"2025-10-10T00:00:00"}