{"id":"https://openalex.org/W2509519298","doi":"https://doi.org/10.1186/s13321-016-0158-y","title":"Rocker: Open source, easy-to-use tool for AUC and enrichment calculations and ROC visualization","display_name":"Rocker: Open source, easy-to-use tool for AUC and enrichment calculations and ROC visualization","publication_year":2016,"publication_date":"2016-09-07","ids":{"openalex":"https://openalex.org/W2509519298","doi":"https://doi.org/10.1186/s13321-016-0158-y","mag":"2509519298","pmid":"https://pubmed.ncbi.nlm.nih.gov/27606011"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-016-0158-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-016-0158-y","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-016-0158-y","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-016-0158-y","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5024030912","display_name":"Sakari L\u00e4tti","orcid":"https://orcid.org/0000-0002-4132-8745"},"institutions":[{"id":"https://openalex.org/I94722563","display_name":"University of Jyv\u00e4skyl\u00e4","ror":"https://ror.org/05n3dz165","country_code":"FI","type":"education","lineage":["https://openalex.org/I94722563"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Sakari L\u00e4tti","raw_affiliation_strings":["Computational Bioscience Laboratory, Department of Biological and Environmental Science and Nanoscience Center, University of Jyv\u00e4skyl\u00e4, P.O. Box 35, 40014 Jyv\u00e4skyl\u00e4, Finland","Computational Bioscience Laboratory, Department of Biological and Environmental Science and Nanoscience Center, University of Jyv\u00e4skyl\u00e4, P.O. Box 35, 40014, Jyv\u00e4skyl\u00e4, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Bioscience Laboratory, Department of Biological and Environmental Science and Nanoscience Center, University of Jyv\u00e4skyl\u00e4, P.O. Box 35, 40014 Jyv\u00e4skyl\u00e4, Finland","institution_ids":["https://openalex.org/I94722563"]},{"raw_affiliation_string":"Computational Bioscience Laboratory, Department of Biological and Environmental Science and Nanoscience Center, University of Jyv\u00e4skyl\u00e4, P.O. Box 35, 40014, Jyv\u00e4skyl\u00e4, Finland","institution_ids":["https://openalex.org/I94722563"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037452795","display_name":"Sanna Niinivehmas","orcid":"https://orcid.org/0000-0002-2944-8744"},"institutions":[{"id":"https://openalex.org/I94722563","display_name":"University of Jyv\u00e4skyl\u00e4","ror":"https://ror.org/05n3dz165","country_code":"FI","type":"education","lineage":["https://openalex.org/I94722563"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Sanna Niinivehmas","raw_affiliation_strings":["Computational Bioscience Laboratory, Department of Biological and Environmental Science and Nanoscience Center, University of Jyv\u00e4skyl\u00e4, P.O. Box 35, 40014 Jyv\u00e4skyl\u00e4, Finland","Computational Bioscience Laboratory, Department of Biological and Environmental Science and Nanoscience Center, University of Jyv\u00e4skyl\u00e4, P.O. Box 35, 40014, Jyv\u00e4skyl\u00e4, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Bioscience Laboratory, Department of Biological and Environmental Science and Nanoscience Center, University of Jyv\u00e4skyl\u00e4, P.O. Box 35, 40014 Jyv\u00e4skyl\u00e4, Finland","institution_ids":["https://openalex.org/I94722563"]},{"raw_affiliation_string":"Computational Bioscience Laboratory, Department of Biological and Environmental Science and Nanoscience Center, University of Jyv\u00e4skyl\u00e4, P.O. Box 35, 40014, Jyv\u00e4skyl\u00e4, Finland","institution_ids":["https://openalex.org/I94722563"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5090456130","display_name":"Olli T. Pentik\u00e4inen","orcid":"https://orcid.org/0000-0001-7188-4016"},"institutions":[{"id":"https://openalex.org/I94722563","display_name":"University of Jyv\u00e4skyl\u00e4","ror":"https://ror.org/05n3dz165","country_code":"FI","type":"education","lineage":["https://openalex.org/I94722563"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Olli T. Pentik\u00e4inen","raw_affiliation_strings":["Computational Bioscience Laboratory, Department of Biological and Environmental Science and Nanoscience Center, University of Jyv\u00e4skyl\u00e4, P.O. Box 35, 40014 Jyv\u00e4skyl\u00e4, Finland","Computational Bioscience Laboratory, Department of Biological and Environmental Science and Nanoscience Center, University of Jyv\u00e4skyl\u00e4, P.O. Box 35, 40014, Jyv\u00e4skyl\u00e4, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Bioscience Laboratory, Department of Biological and Environmental Science and Nanoscience Center, University of Jyv\u00e4skyl\u00e4, P.O. Box 35, 40014 Jyv\u00e4skyl\u00e4, Finland","institution_ids":["https://openalex.org/I94722563"]},{"raw_affiliation_string":"Computational Bioscience Laboratory, Department of Biological and Environmental Science and Nanoscience Center, University of Jyv\u00e4skyl\u00e4, P.O. Box 35, 40014, Jyv\u00e4skyl\u00e4, Finland","institution_ids":["https://openalex.org/I94722563"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1290,"currency":"GBP","value_usd":1582},"apc_paid":{"value":1290,"currency":"GBP","value_usd":1582},"fwci":8.6509,"has_fulltext":true,"cited_by_count":109,"citation_normalized_percentile":{"value":0.97817658,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"8","issue":"1","first_page":"45","last_page":"45"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9455999732017517,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9455999732017517,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9244999885559082,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11652","display_name":"Imbalanced Data Classification Techniques","score":0.9214000105857849,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/receiver-operating-characteristic","display_name":"Receiver operating characteristic","score":0.7671304941177368},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7335867881774902},{"id":"https://openalex.org/keywords/cheminformatics","display_name":"Cheminformatics","score":0.7259061932563782},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6620807647705078},{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.6445251703262329},{"id":"https://openalex.org/keywords/plug-in","display_name":"Plug-in","score":0.6057507395744324},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5747978091239929},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5222309827804565},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4985179901123047},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.43401262164115906},{"id":"https://openalex.org/keywords/license","display_name":"License","score":0.42936909198760986},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.37748801708221436},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.21102279424667358},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.18865364789962769},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.16915038228034973}],"concepts":[{"id":"https://openalex.org/C58471807","wikidata":"https://www.wikidata.org/wiki/Q327120","display_name":"Receiver operating characteristic","level":2,"score":0.7671304941177368},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7335867881774902},{"id":"https://openalex.org/C68762167","wikidata":"https://www.wikidata.org/wiki/Q910164","display_name":"Cheminformatics","level":2,"score":0.7259061932563782},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6620807647705078},{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.6445251703262329},{"id":"https://openalex.org/C4924752","wikidata":"https://www.wikidata.org/wiki/Q184148","display_name":"Plug-in","level":2,"score":0.6057507395744324},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5747978091239929},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5222309827804565},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4985179901123047},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.43401262164115906},{"id":"https://openalex.org/C2780560020","wikidata":"https://www.wikidata.org/wiki/Q79719","display_name":"License","level":2,"score":0.42936909198760986},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.37748801708221436},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.21102279424667358},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.18865364789962769},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.16915038228034973},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/s13321-016-0158-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-016-0158-y","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-016-0158-y","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:27606011","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27606011","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:jyx.jyu.fi:123456789/51307","is_oa":true,"landing_page_url":"http://urn.fi/URN:NBN:fi:jyu-201609084050","pdf_url":null,"source":{"id":"https://openalex.org/S4306400563","display_name":"Jyv\u00e4skyl\u00e4 University Digital Archive (University of Jyv\u00e4skyl\u00e4)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I94722563","host_organization_name":"University of Jyv\u00e4skyl\u00e4","host_organization_lineage":["https://openalex.org/I94722563"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"A1"},{"id":"pmh:oai:pubmedcentral.nih.gov:5013620","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5013620","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Cheminform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13321-016-0158-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-016-0158-y","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-016-0158-y","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Peace, Justice and strong institutions","score":0.5899999737739563,"id":"https://metadata.un.org/sdg/16"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320322725","display_name":"China Scholarship Council","ror":"https://ror.org/04atp4p48"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2509519298.pdf","grobid_xml":"https://content.openalex.org/works/W2509519298.grobid-xml"},"referenced_works_count":16,"referenced_works":["https://openalex.org/W1524233929","https://openalex.org/W1792751107","https://openalex.org/W1966950894","https://openalex.org/W1968319881","https://openalex.org/W1970208561","https://openalex.org/W2006617902","https://openalex.org/W2009618221","https://openalex.org/W2018760046","https://openalex.org/W2042110087","https://openalex.org/W2079331631","https://openalex.org/W2096541451","https://openalex.org/W2127760066","https://openalex.org/W2145126338","https://openalex.org/W2157825442","https://openalex.org/W2158698691","https://openalex.org/W2161959113"],"related_works":["https://openalex.org/W4362464865","https://openalex.org/W2098840560","https://openalex.org/W2768880727","https://openalex.org/W2277007946","https://openalex.org/W2113146994","https://openalex.org/W2073081213","https://openalex.org/W2621548818","https://openalex.org/W4298269242","https://openalex.org/W4298401663","https://openalex.org/W4302604134"],"abstract_inverted_index":{"ABSTRACT:":[0],"Receiver":[1],"operating":[2],"characteristics":[3],"(ROC)":[4],"curve":[5,12,91,117],"with":[6],"the":[7,20,41,44,57,80,99,112,115,135],"calculation":[8,110,147],"of":[9,22,43,56,101,111,121,138,153],"area":[10],"under":[11],"(AUC)":[13],"is":[14,130,156],"a":[15,88],"useful":[16],"tool":[17,93],"to":[18,39,47,82,133],"evaluate":[19],"performance":[21],"biomedical":[23],"and":[24,118,163],"chemoinformatics":[25],"data.":[26],"For":[27],"example,":[28],"in":[29,73,125],"virtual":[30,126],"drug":[31],"screening":[32,127],"ROC":[33,61,90,116,122],"curves":[34],"are":[35,63,71,77],"very":[36],"often":[37,131],"used":[38,45,97],"visualize":[40],"efficiency":[42],"application":[46],"separate":[48],"active":[49,139],"ligands":[50],"from":[51,165],"inactive":[52],"molecules.":[53],"Unfortunately,":[54],"most":[55],"available":[58,67,158],"tools":[59],"for":[60,98,114,142,161],"analysis":[62],"implemented":[64],"into":[65],"commercially":[66],"software":[68],"packages,":[69],"or":[70],"plugins":[72],"statistical":[74],"software,":[75],"which":[76],"not":[78],"always":[79],"easiest":[81],"use.":[83],"Here,":[84],"we":[85],"present":[86],"Rocker,":[87,154],"simple":[89],"visualization":[92],"that":[94],"can":[95],"be":[96],"generation":[100],"publication":[102],"quality":[103],"images.":[104],"Rocker":[105,144],"also":[106],"includes":[107],"an":[108],"automatic":[109],"AUC":[113],"Boltzmann-enhanced":[119],"discrimination":[120],"(BEDROC).":[123],"Furthermore,":[124],"campaigns":[128],"it":[129,155],"important":[132],"understand":[134],"early":[136],"enrichment":[137],"ligand":[140],"identification,":[141],"this":[143],"offers":[145],"automated":[146],"routine.":[148],"To":[149],"enable":[150],"further":[151],"development":[152],"freely":[157],"(MIT-GPL":[159],"license)":[160],"use":[162],"modifications":[164],"our":[166],"web-site":[167],"(http://www.jyu.fi/rocker).":[168]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":18},{"year":2022,"cited_by_count":13},{"year":2021,"cited_by_count":13},{"year":2020,"cited_by_count":15},{"year":2019,"cited_by_count":12},{"year":2018,"cited_by_count":9},{"year":2017,"cited_by_count":3},{"year":2014,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
