{"id":"https://openalex.org/W2517814100","doi":"https://doi.org/10.1186/s13321-016-0155-1","title":"Molmil: a molecular viewer for the PDB and beyond","display_name":"Molmil: a molecular viewer for the PDB and beyond","publication_year":2016,"publication_date":"2016-08-26","ids":{"openalex":"https://openalex.org/W2517814100","doi":"https://doi.org/10.1186/s13321-016-0155-1","mag":"2517814100","pmid":"https://pubmed.ncbi.nlm.nih.gov/27570544"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-016-0155-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-016-0155-1","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-016-0155-1","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-016-0155-1","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5058425101","display_name":"Gert\u2010Jan Bekker","orcid":"https://orcid.org/0000-0001-8385-5693"},"institutions":[{"id":"https://openalex.org/I98285908","display_name":"Osaka University","ror":"https://ror.org/035t8zc32","country_code":"JP","type":"education","lineage":["https://openalex.org/I98285908"]},{"id":"https://openalex.org/I4210152009","display_name":"Protein Research Foundation","ror":"https://ror.org/03yzv7g36","country_code":"JP","type":"other","lineage":["https://openalex.org/I4210152009"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Gert-Jan Bekker","raw_affiliation_strings":["Laboratory of Protein Informatics, Institute for Protein Research, Osaka University, 3-2 Yamadaoka, Suita, Osaka 565-0871 Japan ; Graduate School of Frontier Biosciences, Osaka University, Suita, Osaka 565-0871 Japan","Laboratory of Protein Informatics, Institute for Protein Research, Osaka University, 3-2 Yamadaoka, Suita, Osaka, 565-0871, Japan"],"affiliations":[{"raw_affiliation_string":"Laboratory of Protein Informatics, Institute for Protein Research, Osaka University, 3-2 Yamadaoka, Suita, Osaka 565-0871 Japan ; Graduate School of Frontier Biosciences, Osaka University, Suita, Osaka 565-0871 Japan","institution_ids":[]},{"raw_affiliation_string":"Laboratory of Protein Informatics, Institute for Protein Research, Osaka University, 3-2 Yamadaoka, Suita, Osaka, 565-0871, Japan","institution_ids":["https://openalex.org/I4210152009","https://openalex.org/I98285908"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035143113","display_name":"Haruki Nakamura","orcid":"https://orcid.org/0000-0001-6690-5863"},"institutions":[{"id":"https://openalex.org/I98285908","display_name":"Osaka University","ror":"https://ror.org/035t8zc32","country_code":"JP","type":"education","lineage":["https://openalex.org/I98285908"]},{"id":"https://openalex.org/I4210152009","display_name":"Protein Research Foundation","ror":"https://ror.org/03yzv7g36","country_code":"JP","type":"other","lineage":["https://openalex.org/I4210152009"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Haruki Nakamura","raw_affiliation_strings":["Laboratory of Protein Informatics, Institute for Protein Research, Osaka University, 3-2 Yamadaoka, Suita, Osaka 565-0871 Japan","Laboratory of Protein Informatics, Institute for Protein Research, Osaka University, 3-2 Yamadaoka, Suita, Osaka, 565-0871, Japan"],"affiliations":[{"raw_affiliation_string":"Laboratory of Protein Informatics, Institute for Protein Research, Osaka University, 3-2 Yamadaoka, Suita, Osaka 565-0871 Japan","institution_ids":[]},{"raw_affiliation_string":"Laboratory of Protein Informatics, Institute for Protein Research, Osaka University, 3-2 Yamadaoka, Suita, Osaka, 565-0871, Japan","institution_ids":["https://openalex.org/I4210152009","https://openalex.org/I98285908"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5080613861","display_name":"Akira R. Kinjo","orcid":"https://orcid.org/0000-0002-4006-8208"},"institutions":[{"id":"https://openalex.org/I4210152009","display_name":"Protein Research Foundation","ror":"https://ror.org/03yzv7g36","country_code":"JP","type":"other","lineage":["https://openalex.org/I4210152009"]},{"id":"https://openalex.org/I98285908","display_name":"Osaka University","ror":"https://ror.org/035t8zc32","country_code":"JP","type":"education","lineage":["https://openalex.org/I98285908"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Akira R. Kinjo","raw_affiliation_strings":["Laboratory of Protein Informatics, Institute for Protein Research, Osaka University, 3-2 Yamadaoka, Suita, Osaka 565-0871 Japan","Laboratory of Protein Informatics, Institute for Protein Research, Osaka University, 3-2 Yamadaoka, Suita, Osaka, 565-0871, Japan"],"affiliations":[{"raw_affiliation_string":"Laboratory of Protein Informatics, Institute for Protein Research, Osaka University, 3-2 Yamadaoka, Suita, Osaka 565-0871 Japan","institution_ids":[]},{"raw_affiliation_string":"Laboratory of Protein Informatics, Institute for Protein Research, Osaka University, 3-2 Yamadaoka, Suita, Osaka, 565-0871, Japan","institution_ids":["https://openalex.org/I4210152009","https://openalex.org/I98285908"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5058425101"],"corresponding_institution_ids":["https://openalex.org/I4210152009","https://openalex.org/I98285908"],"apc_list":{"value":1290,"currency":"GBP","value_usd":1582},"apc_paid":{"value":1290,"currency":"GBP","value_usd":1582},"fwci":4.4465,"has_fulltext":true,"cited_by_count":80,"citation_normalized_percentile":{"value":0.95059591,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"8","issue":"1","first_page":"42","last_page":"42"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.989799976348877,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.8893210887908936},{"id":"https://openalex.org/keywords/javascript","display_name":"JavaScript","score":0.8482197523117065},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8135725259780884},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.6616295576095581},{"id":"https://openalex.org/keywords/android","display_name":"Android (operating system)","score":0.5736198425292969},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5246958136558533},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.38961276412010193},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.3770284652709961}],"concepts":[{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.8893210887908936},{"id":"https://openalex.org/C544833334","wikidata":"https://www.wikidata.org/wiki/Q2005","display_name":"JavaScript","level":2,"score":0.8482197523117065},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8135725259780884},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.6616295576095581},{"id":"https://openalex.org/C557433098","wikidata":"https://www.wikidata.org/wiki/Q94","display_name":"Android (operating system)","level":2,"score":0.5736198425292969},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5246958136558533},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.38961276412010193},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.3770284652709961}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1186/s13321-016-0155-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-016-0155-1","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-016-0155-1","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:27570544","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27570544","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:5002144","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5002144","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Cheminform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13321-016-0155-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-016-0155-1","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-016-0155-1","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.5199999809265137}],"awards":[],"funders":[{"id":"https://openalex.org/F4320338078","display_name":"National Bioscience Database Center","ror":"https://ror.org/00097mb19"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2517814100.pdf","grobid_xml":"https://content.openalex.org/works/W2517814100.grobid-xml"},"referenced_works_count":20,"referenced_works":["https://openalex.org/W255996521","https://openalex.org/W1031578623","https://openalex.org/W1535307372","https://openalex.org/W1969142598","https://openalex.org/W1977064288","https://openalex.org/W1991038721","https://openalex.org/W1995775850","https://openalex.org/W2003196055","https://openalex.org/W2011703027","https://openalex.org/W2021064626","https://openalex.org/W2029667189","https://openalex.org/W2108921801","https://openalex.org/W2119087770","https://openalex.org/W2122585444","https://openalex.org/W2132629607","https://openalex.org/W2147085530","https://openalex.org/W2150306348","https://openalex.org/W2154792548","https://openalex.org/W2190898324","https://openalex.org/W4210309881"],"related_works":["https://openalex.org/W2461078469","https://openalex.org/W2944823289","https://openalex.org/W123790205","https://openalex.org/W2085515337","https://openalex.org/W3037018281","https://openalex.org/W3087706721","https://openalex.org/W4287664162","https://openalex.org/W2392118929","https://openalex.org/W1565885216","https://openalex.org/W2367815957"],"abstract_inverted_index":{"We":[0],"have":[1],"developed":[2],"a":[3,64],"new":[4,35],"platform-independent":[5],"web-based":[6],"molecular":[7,14],"viewer":[8,43],"using":[9],"JavaScript":[10],"and":[11,29],"WebGL.":[12],"The":[13,81],"viewer,":[15],"Molmil,":[16],"has":[17],"been":[18],"integrated":[19],"into":[20],"several":[21],"services":[22],"offered":[23],"by":[24,37],"Protein":[25],"Data":[26],"Bank":[27],"Japan":[28],"can":[30,44],"be":[31,45],"easily":[32],"extended":[33],"with":[34],"functionality":[36],"third":[38],"party":[39],"developers.":[40],"Furthermore,":[41],"the":[42,54,61,89],"used":[46],"to":[47,63],"load":[48],"files":[49],"in":[50],"various":[51],"formats":[52],"from":[53,79],"user's":[55],"local":[56],"hard":[57],"drive":[58],"without":[59],"uploading":[60],"data":[62],"server.":[65],"Molmil":[66],"is":[67,84],"available":[68,85],"for":[69],"all":[70],"platforms":[71],"supporting":[72],"WebGL":[73],"(e.g.":[74],"Windows,":[75],"Linux,":[76],"iOS,":[77],"Android)":[78],"http://gjbekker.github.io/molmil/.":[80],"source":[82],"code":[83],"at":[86],"http://github.com/gjbekker/molmil":[87],"under":[88],"LGPLv3":[90],"licence.":[91]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":11},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":12},{"year":2020,"cited_by_count":9},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":10},{"year":2017,"cited_by_count":9},{"year":2016,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
