{"id":"https://openalex.org/W2413297387","doi":"https://doi.org/10.1186/s13321-016-0143-5","title":"Are the physicochemical properties of antibacterial compounds really different from other drugs?","display_name":"Are the physicochemical properties of antibacterial compounds really different from other drugs?","publication_year":2016,"publication_date":"2016-06-03","ids":{"openalex":"https://openalex.org/W2413297387","doi":"https://doi.org/10.1186/s13321-016-0143-5","mag":"2413297387","pmid":"https://pubmed.ncbi.nlm.nih.gov/27274770"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-016-0143-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-016-0143-5","pdf_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/s13321-016-0143-5","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/s13321-016-0143-5","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5067305343","display_name":"Jean-Paul Ebejer","orcid":"https://orcid.org/0000-0003-0888-2637"},"institutions":[{"id":"https://openalex.org/I197854408","display_name":"University of Malta","ror":"https://ror.org/03a62bv60","country_code":"MT","type":"education","lineage":["https://openalex.org/I197854408"]},{"id":"https://openalex.org/I4210101360","display_name":"Oxford Drug Design (United Kingdom)","ror":"https://ror.org/00p7fct09","country_code":"GB","type":"company","lineage":["https://openalex.org/I4210101360"]}],"countries":["GB","MT"],"is_corresponding":false,"raw_author_name":"Jean-Paul Ebejer","raw_affiliation_strings":["InhibOx Limited, Oxford Centre for Innovation, New Road, Oxford, OX1 1BY UK ; Centre for Molecular Medicine and Biobanking, University of Malta, Msida, MSD 2080 Malta","InhibOx Limited, Oxford Centre for Innovation, New Road, Oxford, OX1 1BY, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"InhibOx Limited, Oxford Centre for Innovation, New Road, Oxford, OX1 1BY UK ; Centre for Molecular Medicine and Biobanking, University of Malta, Msida, MSD 2080 Malta","institution_ids":["https://openalex.org/I197854408"]},{"raw_affiliation_string":"InhibOx Limited, Oxford Centre for Innovation, New Road, Oxford, OX1 1BY, UK","institution_ids":["https://openalex.org/I4210101360"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047329269","display_name":"M. Charlton","orcid":"https://orcid.org/0000-0002-9754-1932"},"institutions":[{"id":"https://openalex.org/I4210101360","display_name":"Oxford Drug Design (United Kingdom)","ror":"https://ror.org/00p7fct09","country_code":"GB","type":"company","lineage":["https://openalex.org/I4210101360"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Michael H. Charlton","raw_affiliation_strings":["InhibOx Limited, Oxford Centre for Innovation, New Road, Oxford, OX1 1BY UK","InhibOx Limited, Oxford Centre for Innovation, New Road, Oxford, OX1 1BY, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"InhibOx Limited, Oxford Centre for Innovation, New Road, Oxford, OX1 1BY UK","institution_ids":["https://openalex.org/I4210101360"]},{"raw_affiliation_string":"InhibOx Limited, Oxford Centre for Innovation, New Road, Oxford, OX1 1BY, UK","institution_ids":["https://openalex.org/I4210101360"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5038773829","display_name":"Paul W. Finn","orcid":null},"institutions":[{"id":"https://openalex.org/I4210101360","display_name":"Oxford Drug Design (United Kingdom)","ror":"https://ror.org/00p7fct09","country_code":"GB","type":"company","lineage":["https://openalex.org/I4210101360"]},{"id":"https://openalex.org/I92864154","display_name":"University of Buckingham","ror":"https://ror.org/03kd28f18","country_code":"GB","type":"education","lineage":["https://openalex.org/I92864154"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Paul W. Finn","raw_affiliation_strings":["InhibOx Limited, Oxford Centre for Innovation, New Road, Oxford, OX1 1BY UK ; University of Buckingham, Hunter Street, Buckingham, MK18 1EG UK","InhibOx Limited, Oxford Centre for Innovation, New Road, Oxford, OX1 1BY, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"InhibOx Limited, Oxford Centre for Innovation, New Road, Oxford, OX1 1BY UK ; University of Buckingham, Hunter Street, Buckingham, MK18 1EG UK","institution_ids":["https://openalex.org/I92864154"]},{"raw_affiliation_string":"InhibOx Limited, Oxford Centre for Innovation, New Road, Oxford, OX1 1BY, UK","institution_ids":["https://openalex.org/I4210101360"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5038773829"],"corresponding_institution_ids":["https://openalex.org/I4210101360","https://openalex.org/I92864154"],"apc_list":{"value":2390,"currency":"USD","value_usd":2390},"apc_paid":{"value":2390,"currency":"USD","value_usd":2390},"fwci":6.8941,"has_fulltext":true,"cited_by_count":52,"citation_normalized_percentile":{"value":0.97001438,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"8","issue":"1","first_page":"30","last_page":"30"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.23190000653266907,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.23190000653266907,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12526","display_name":"Antimicrobial agents and applications","score":0.1331000030040741,"subfield":{"id":"https://openalex.org/subfields/1605","display_name":"Organic Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13454","display_name":"Phenothiazines and Benzothiazines Synthesis and Activities","score":0.07370000332593918,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4623613953590393},{"id":"https://openalex.org/keywords/antibacterial-activity","display_name":"Antibacterial activity","score":0.4413365125656128},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.3922472596168518},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3654133677482605},{"id":"https://openalex.org/keywords/biochemical-engineering","display_name":"Biochemical engineering","score":0.3200799226760864},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.09608036279678345},{"id":"https://openalex.org/keywords/bacteria","display_name":"Bacteria","score":0.07790562510490417},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.06176826357841492}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4623613953590393},{"id":"https://openalex.org/C2780104969","wikidata":"https://www.wikidata.org/wiki/Q4774530","display_name":"Antibacterial activity","level":3,"score":0.4413365125656128},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.3922472596168518},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3654133677482605},{"id":"https://openalex.org/C183696295","wikidata":"https://www.wikidata.org/wiki/Q2487696","display_name":"Biochemical engineering","level":1,"score":0.3200799226760864},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.09608036279678345},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.07790562510490417},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.06176826357841492},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0}],"mesh":[],"locations_count":6,"locations":[{"id":"doi:10.1186/s13321-016-0143-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-016-0143-5","pdf_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/s13321-016-0143-5","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:27274770","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27274770","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":"Journal Article"},{"id":"pmh:oai:bear.buckingham.ac.uk:139","is_oa":false,"landing_page_url":"http://bear.buckingham.ac.uk/139/1/2016.AntibacterialPhysChemProps.pdf","pdf_url":"http://bear.buckingham.ac.uk/139/1/2016.AntibacterialPhysChemProps.pdf","source":{"id":"https://openalex.org/S4377196562","display_name":"Buckingham E-Archive of Research (University of Buckingham)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I92864154","host_organization_name":"University of Buckingham","host_organization_lineage":["https://openalex.org/I92864154"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:4891840","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4891840","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Cheminform","raw_type":"Text"},{"id":"pmh:oai:www.um.edu.mt:123456789/56580","is_oa":true,"landing_page_url":"https://www.um.edu.mt/library/oar/handle/123456789/56580","pdf_url":null,"source":{"id":"https://openalex.org/S4306400782","display_name":"OAR@UM (University of Malta)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I197854408","host_organization_name":"University of Malta","host_organization_lineage":["https://openalex.org/I197854408"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:zenodo.org:59590","is_oa":true,"landing_page_url":"https://zenodo.org/record/59590","pdf_url":null,"source":{"id":"https://openalex.org/S4306402478","display_name":"INFM-OAR (INFN Catania)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210116497","host_organization_name":"Istituto Nazionale di Fisica Nucleare, Sezione di Catania","host_organization_lineage":["https://openalex.org/I4210116497"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1186/s13321-016-0143-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-016-0143-5","pdf_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/s13321-016-0143-5","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.5099999904632568}],"awards":[{"id":"https://openalex.org/G2325242462","display_name":null,"funder_award_id":"EU-FP7","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G2738209668","display_name":null,"funder_award_id":"601725","funder_id":"https://openalex.org/F4320334960","funder_display_name":"Seventh Framework Programme"},{"id":"https://openalex.org/G8404823738","display_name":"New AntiBacterials with Inhibitory activity on Aminoacyl-tRNA Synthetases","funder_award_id":"601725","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320334960","display_name":"Seventh Framework Programme","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2413297387.pdf","grobid_xml":"https://content.openalex.org/works/W2413297387.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W1547561487","https://openalex.org/W1964141703","https://openalex.org/W1965878806","https://openalex.org/W1975875968","https://openalex.org/W1976415436","https://openalex.org/W1980230900","https://openalex.org/W1980397764","https://openalex.org/W1981354328","https://openalex.org/W1985977028","https://openalex.org/W2021827987","https://openalex.org/W2024434824","https://openalex.org/W2031065115","https://openalex.org/W2032408643","https://openalex.org/W2039932426","https://openalex.org/W2040186990","https://openalex.org/W2054585308","https://openalex.org/W2058820833","https://openalex.org/W2086012603","https://openalex.org/W2118017337","https://openalex.org/W2122319025","https://openalex.org/W2127999800","https://openalex.org/W2135033195","https://openalex.org/W2135732933","https://openalex.org/W2159588618","https://openalex.org/W2322777826","https://openalex.org/W2333152051","https://openalex.org/W2571206619","https://openalex.org/W2953250424","https://openalex.org/W4248107770"],"related_works":["https://openalex.org/W4387497383","https://openalex.org/W2948807893","https://openalex.org/W2899084033","https://openalex.org/W2778153218","https://openalex.org/W2748952813","https://openalex.org/W1531601525","https://openalex.org/W4391375266","https://openalex.org/W2078814861","https://openalex.org/W2527526854","https://openalex.org/W1976181487"],"abstract_inverted_index":{"BACKGROUND:":[0],"It":[1],"is":[2,8,71,87,196,218],"now":[3],"widely":[4],"recognized":[5],"that":[6,72,84,160,178,201],"there":[7],"an":[9,122],"urgent":[10],"need":[11],"for":[12,89,141],"new":[13,31],"antibacterial":[14,58,69,73,90,123,163,181,216],"drugs,":[15,82],"with":[16,117,162],"novel":[17],"mechanisms":[18],"of":[19,25,67,103,115,148,186,208],"action,":[20],"to":[21,80,129,171,214],"combat":[22],"the":[23,35,104,109,149,199],"rise":[24],"multi-drug":[26],"resistant":[27],"bacteria.":[28],"However,":[29,198],"few":[30],"compounds":[32,116,150,161],"are":[33],"reaching":[34],"market.":[36],"Antibacterial":[37],"drug":[38,173],"discovery":[39],"projects":[40],"often":[41],"succeed":[42],"in":[43,47,56,108,121,184,206,212],"identifying":[44],"potent":[45],"molecules":[46],"biochemical":[48],"assays":[49],"but":[50],"have":[51,94,165],"been":[52],"beset":[53],"by":[54,98,221],"difficulties":[55],"obtaining":[57],"activity.":[59,91],"A":[60],"commonly":[61],"held":[62],"view,":[63],"based":[64],"on":[65],"analysis":[66,102,158],"marketed":[68,136,140],"compounds,":[70],"drugs":[74,139,182],"possess":[75,215],"very":[76,169],"different":[77],"physicochemical":[78,113,166,187],"properties":[79,114],"other":[81,131,142,172],"and":[83,127,138,151],"this":[85,96],"profile":[86,153],"required":[88],"RESULTS:":[92],"We":[93],"re-examined":[95],"issue":[97],"performing":[99],"a":[100,118,202],"cheminformatics":[101],"literature":[105],"data":[106],"available":[107],"ChEMBL":[110],"database.":[111],"The":[112,145,176],"recorded":[119],"activity":[120,164,217],"assay":[124],"were":[125,154],"calculated":[126],"compared":[128],"two":[130],"datasets":[132],"extracted":[133],"from":[134,191],"ChEMBL,":[135],"antibacterials":[137],"therapeutic":[143],"indications.":[144],"chemical":[146],"class":[147],"Gram-negative/Gram-positive":[152],"also":[155],"investigated.":[156],"This":[157],"shows":[159],"property":[167,188],"profiles":[168],"similar":[170],"classes.":[174],"CONCLUSIONS:":[175],"observation":[177],"many":[179],"current":[180],"lie":[183,205],"regions":[185,211],"space":[189],"far":[190],"conventional":[192],"small":[193],"molecule":[194],"therapeutics":[195],"correct.":[197],"inference":[200],"compound":[203],"must":[204],"one":[207],"these":[209],"\"outlier\"":[210],"order":[213],"not":[219],"supported":[220],"our":[222],"analysis.":[223],"Graphical":[224],"abstract.":[225]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":9},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":12},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":4}],"updated_date":"2026-08-23T07:36:19.812096","created_date":"2025-10-10T00:00:00"}
