{"id":"https://openalex.org/W2397609778","doi":"https://doi.org/10.1186/s13321-016-0137-3","title":"Badapple: promiscuity patterns from noisy evidence","display_name":"Badapple: promiscuity patterns from noisy evidence","publication_year":2016,"publication_date":"2016-05-27","ids":{"openalex":"https://openalex.org/W2397609778","doi":"https://doi.org/10.1186/s13321-016-0137-3","mag":"2397609778","pmid":"https://pubmed.ncbi.nlm.nih.gov/27239230"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-016-0137-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-016-0137-3","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-016-0137-3","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-016-0137-3","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5076911664","display_name":"Jeremy J. Yang","orcid":"https://orcid.org/0000-0002-1476-6192"},"institutions":[{"id":"https://openalex.org/I169521973","display_name":"University of New Mexico","ror":"https://ror.org/05fs6jp91","country_code":"US","type":"education","lineage":["https://openalex.org/I169521973"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jeremy J. Yang","raw_affiliation_strings":["Translational Informatics Division, Department of Internal Medicine, University of New Mexico School of Medicine, Albuquerque, NM 87131 USA","Translational Informatics Division, Department of Internal Medicine, University of New Mexico School of Medicine, Albuquerque, NM, 87131, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Translational Informatics Division, Department of Internal Medicine, University of New Mexico School of Medicine, Albuquerque, NM 87131 USA","institution_ids":["https://openalex.org/I169521973"]},{"raw_affiliation_string":"Translational Informatics Division, Department of Internal Medicine, University of New Mexico School of Medicine, Albuquerque, NM, 87131, USA","institution_ids":["https://openalex.org/I169521973"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064097191","display_name":"Oleg Ursu","orcid":"https://orcid.org/0000-0003-0596-8339"},"institutions":[{"id":"https://openalex.org/I169521973","display_name":"University of New Mexico","ror":"https://ror.org/05fs6jp91","country_code":"US","type":"education","lineage":["https://openalex.org/I169521973"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Oleg Ursu","raw_affiliation_strings":["Translational Informatics Division, Department of Internal Medicine, University of New Mexico School of Medicine, Albuquerque, NM 87131 USA","Translational Informatics Division, Department of Internal Medicine, University of New Mexico School of Medicine, Albuquerque, NM, 87131, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Translational Informatics Division, Department of Internal Medicine, University of New Mexico School of Medicine, Albuquerque, NM 87131 USA","institution_ids":["https://openalex.org/I169521973"]},{"raw_affiliation_string":"Translational Informatics Division, Department of Internal Medicine, University of New Mexico School of Medicine, Albuquerque, NM, 87131, USA","institution_ids":["https://openalex.org/I169521973"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040688597","display_name":"Christopher A. Lipinski","orcid":"https://orcid.org/0000-0001-7355-7254"},"institutions":[{"id":"https://openalex.org/I2799533474","display_name":"Waterford Institute","ror":"https://ror.org/04k9e4w52","country_code":"US","type":"education","lineage":["https://openalex.org/I2799533474"]},{"id":"https://openalex.org/I4210144618","display_name":"Kelda Group (United Kingdom)","ror":"https://ror.org/049tfmr46","country_code":"GB","type":"company","lineage":["https://openalex.org/I4210144618"]}],"countries":["GB","US"],"is_corresponding":false,"raw_author_name":"Christopher A. Lipinski","raw_affiliation_strings":["10 Connshire Drive, Waterford, CT 06385-4122 USA","10 Connshire Drive, Waterford, CT, 06385-4122, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"10 Connshire Drive, Waterford, CT 06385-4122 USA","institution_ids":["https://openalex.org/I2799533474","https://openalex.org/I4210144618"]},{"raw_affiliation_string":"10 Connshire Drive, Waterford, CT, 06385-4122, USA","institution_ids":["https://openalex.org/I2799533474"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028187863","display_name":"Larry A. Sklar","orcid":"https://orcid.org/0000-0002-8196-5060"},"institutions":[{"id":"https://openalex.org/I169521973","display_name":"University of New Mexico","ror":"https://ror.org/05fs6jp91","country_code":"US","type":"education","lineage":["https://openalex.org/I169521973"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Larry A. Sklar","raw_affiliation_strings":["Department of Pathology, Center for Molecular Discovery, University of New Mexico School of Medicine, Albuquerque, NM 87131 USA","Department of Pathology, Center for Molecular Discovery, University of New Mexico School of Medicine, Albuquerque, NM, 87131, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pathology, Center for Molecular Discovery, University of New Mexico School of Medicine, Albuquerque, NM 87131 USA","institution_ids":["https://openalex.org/I169521973"]},{"raw_affiliation_string":"Department of Pathology, Center for Molecular Discovery, University of New Mexico School of Medicine, Albuquerque, NM, 87131, USA","institution_ids":["https://openalex.org/I169521973"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061685157","display_name":"Tudor I. Oprea","orcid":"https://orcid.org/0000-0002-6195-6976"},"institutions":[{"id":"https://openalex.org/I169521973","display_name":"University of New Mexico","ror":"https://ror.org/05fs6jp91","country_code":"US","type":"education","lineage":["https://openalex.org/I169521973"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tudor I. Oprea","raw_affiliation_strings":["Translational Informatics Division, Department of Internal Medicine, University of New Mexico School of Medicine, Albuquerque, NM 87131 USA","Translational Informatics Division, Department of Internal Medicine, University of New Mexico School of Medicine, Albuquerque, NM, 87131, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Translational Informatics Division, Department of Internal Medicine, University of New Mexico School of Medicine, Albuquerque, NM 87131 USA","institution_ids":["https://openalex.org/I169521973"]},{"raw_affiliation_string":"Translational Informatics Division, Department of Internal Medicine, University of New Mexico School of Medicine, Albuquerque, NM, 87131, USA","institution_ids":["https://openalex.org/I169521973"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5053220470","display_name":"Cristian Bologa","orcid":"https://orcid.org/0000-0003-2232-4244"},"institutions":[{"id":"https://openalex.org/I169521973","display_name":"University of New Mexico","ror":"https://ror.org/05fs6jp91","country_code":"US","type":"education","lineage":["https://openalex.org/I169521973"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Cristian G. Bologa","raw_affiliation_strings":["Translational Informatics Division, Department of Internal Medicine, University of New Mexico School of Medicine, Albuquerque, NM 87131 USA","Translational Informatics Division, Department of Internal Medicine, University of New Mexico School of Medicine, Albuquerque, NM, 87131, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Translational Informatics Division, Department of Internal Medicine, University of New Mexico School of Medicine, Albuquerque, NM 87131 USA","institution_ids":["https://openalex.org/I169521973"]},{"raw_affiliation_string":"Translational Informatics Division, Department of Internal Medicine, University of New Mexico School of Medicine, Albuquerque, NM, 87131, USA","institution_ids":["https://openalex.org/I169521973"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5053220470"],"corresponding_institution_ids":["https://openalex.org/I169521973"],"apc_list":{"value":2390,"currency":"USD","value_usd":2390},"apc_paid":{"value":2390,"currency":"USD","value_usd":2390},"fwci":16.7429,"has_fulltext":true,"cited_by_count":103,"citation_normalized_percentile":{"value":0.99207022,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"8","issue":"1","first_page":"29","last_page":"29"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9506999850273132,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9506999850273132,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.011699999682605267,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.008100000210106373,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7193796038627625},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.6172686815261841},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.6122322082519531},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6034364700317383},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6029213070869446},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.5760669112205505},{"id":"https://openalex.org/keywords/plug-in","display_name":"Plug-in","score":0.46459364891052246},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.43263518810272217},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.4305424690246582},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3301524519920349},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.20692580938339233},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1649094521999359}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7193796038627625},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.6172686815261841},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.6122322082519531},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6034364700317383},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6029213070869446},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.5760669112205505},{"id":"https://openalex.org/C4924752","wikidata":"https://www.wikidata.org/wiki/Q184148","display_name":"Plug-in","level":2,"score":0.46459364891052246},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.43263518810272217},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.4305424690246582},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3301524519920349},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.20692580938339233},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1649094521999359},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/s13321-016-0137-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-016-0137-3","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-016-0137-3","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:27239230","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27239230","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":"Journal Article"},{"id":"pmh:oai:europepmc.org:3848582","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4884375","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"doi:10.5281/zenodo.4844970","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.4844970","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.1186/s13321-016-0137-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-016-0137-3","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-016-0137-3","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1042177409","display_name":null,"funder_award_id":"R21GM095952","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G1434448165","display_name":null,"funder_award_id":"U54 CA189205","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G181377050","display_name":null,"funder_award_id":"U54MH084690","funder_id":"https://openalex.org/F4320337346","funder_display_name":"National Institute of Mental Health"},{"id":"https://openalex.org/G1849608474","display_name":null,"funder_award_id":"P30-CA118100","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G2259092220","display_name":"University of New Mexico Center for Molecular Discovery","funder_award_id":"3u54mh084690-04s1","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2925704218","display_name":"Illuminating the Druggable Genome Knowledge Management Center (IDG KMC)","funder_award_id":"3u54ca189205-02s1","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4402208249","display_name":null,"funder_award_id":"U54MH074425","funder_id":"https://openalex.org/F4320337346","funder_display_name":"National Institute of Mental Health"},{"id":"https://openalex.org/G8581381705","display_name":"Chemical Pattern Detection and Visualization in Biological Networks","funder_award_id":"5r21gm095952-02","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337346","display_name":"National Institute of Mental Health","ror":"https://ror.org/04xeg9z08"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2397609778.pdf","grobid_xml":"https://content.openalex.org/works/W2397609778.grobid-xml"},"referenced_works_count":35,"referenced_works":["https://openalex.org/W1489423786","https://openalex.org/W1516646538","https://openalex.org/W1601509217","https://openalex.org/W1640748652","https://openalex.org/W1975293246","https://openalex.org/W1976264236","https://openalex.org/W1982625889","https://openalex.org/W2006641674","https://openalex.org/W2007009477","https://openalex.org/W2008525757","https://openalex.org/W2010595835","https://openalex.org/W2023040612","https://openalex.org/W2041774091","https://openalex.org/W2042338355","https://openalex.org/W2043509228","https://openalex.org/W2046258407","https://openalex.org/W2046564413","https://openalex.org/W2047710091","https://openalex.org/W2048959792","https://openalex.org/W2049415080","https://openalex.org/W2050451453","https://openalex.org/W2060531713","https://openalex.org/W2063379654","https://openalex.org/W2070467901","https://openalex.org/W2085587362","https://openalex.org/W2089612333","https://openalex.org/W2122186080","https://openalex.org/W2135732933","https://openalex.org/W2154183412","https://openalex.org/W2161834869","https://openalex.org/W2166507757","https://openalex.org/W2333447460","https://openalex.org/W2497379199","https://openalex.org/W4248107770","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W47352601","https://openalex.org/W2981957539","https://openalex.org/W4287378204","https://openalex.org/W2461489085","https://openalex.org/W2545422590","https://openalex.org/W4240705470","https://openalex.org/W2945311252","https://openalex.org/W631546281","https://openalex.org/W4206501676","https://openalex.org/W88292646"],"abstract_inverted_index":{"BACKGROUND:":[0],"Bioassay":[1],"data":[2,47,178],"analysis":[3,176],"continues":[4],"to":[5,24,156,199,272,309],"be":[6],"an":[7,140,175],"essential,":[8],"routine,":[9],"yet":[10],"challenging":[11],"task":[12],"in":[13,60,80,98,115,193],"modern":[14],"drug":[15,119,160],"discovery":[16,161],"and":[17,30,45,56,63,73,83,103,117,153,158,213,230,234,276,300,311,313],"chemical":[18,64,286],"biology":[19],"research.":[20],"The":[21],"challenge":[22],"is":[23,101,112,124,244,290,305],"infer":[25],"reliable":[26],"knowledge":[27],"from":[28,174,179],"big":[29],"noisy":[31],"data.":[32],"Some":[33,51],"aspects":[34,52],"of":[35,96,129,196,204,266,285,297,315],"this":[36],"problem":[37],"are":[38,53,107,172,191],"general":[39,152],"with":[40,202,261,268,307],"solutions":[41],"informed":[42],"by":[43],"existing":[44],"emerging":[46],"science":[48],"best":[49],"practices.":[50],"domain":[54],"specific,":[55],"rely":[57],"on":[58,282,302],"expertise":[59],"bioassay":[61],"methodology":[62],"biology.":[65],"Testing":[66],"compounds":[67,132,146,252],"for":[68,142,215,247],"biological":[69],"activity":[70],"requires":[71],"complex":[72],"innovative":[74],"methodology,":[75],"producing":[76],"results":[77],"varying":[78],"widely":[79],"accuracy,":[81],"precision,":[82],"information":[84],"content.":[85],"Hit":[86],"selection":[87],"criteria":[88],"involve":[89],"optimizing":[90],"such":[91],"that":[92],"the":[93,183,194,225,269],"overall":[94,270],"probability":[95],"success":[97],"a":[99,245,258,262],"project":[100],"maximized,":[102],"resource-wasteful":[104],"\"false":[105,274],"trails\"":[106,275],"avoided.":[108],"This":[109],"\"fail-early\"":[110],"approach":[111],"embraced":[113],"both":[114],"pharmaceutical":[116],"academic":[118],"discovery,":[120],"since":[121],"follow-up":[122],"capacity":[123],"resource-limited.":[125],"Thus,":[126],"early":[127],"identification":[128],"likely":[130,144,250],"promiscuous":[131,145,251],"has":[133,207],"practical":[134],"value.":[135],"RESULTS:":[136],"Here":[137],"we":[138],"describe":[139],"algorithm":[141],"identifying":[143,249],"via":[147,182,253,295],"associated":[148,254,260],"scaffolds":[149],"which":[150],"combines":[151],"domain-specific":[154],"features":[155],"assist":[157],"accelerate":[159],"informatics,":[162],"called":[163],"Badapple:":[164],"bioassay-data":[165],"associative":[166],"promiscuity":[167],"pattern":[168],"learning":[169],"engine.":[170],"Results":[171],"described":[173],"using":[177],"MLP":[180],"assays":[181],"BioAssay":[184],"Research":[185],"Database":[186],"(BARD)":[187],"http://bard.nih.gov.":[188],"Specific":[189],"examples":[190],"analyzed":[192],"context":[195],"medicinal":[197],"chemistry,":[198],"illustrate":[200],"associations":[201],"mechanisms":[203],"promiscuity.":[205],"Badapple":[206,243,256,289,304],"been":[208],"developed":[209],"at":[210,240],"UNM,":[211],"released":[212],"deployed":[214],"public":[216,226,236],"use":[217],"two":[218],"ways:":[219],"(1)":[220],"BARD":[221,227,231],"plugin,":[222],"integrated":[223],"into":[224],"REST":[228],"API":[229],"web":[232,237],"client;":[233],"(2)":[235],"app":[238],"hosted":[239],"UNM.":[241],"CONCLUSIONS:":[242],"method":[246],"rapidly":[248],"scaffolds.":[255,303],"generates":[257],"score":[259],"pragmatic,":[263],"empirical":[264],"definition":[265],"promiscuity,":[267],"goal":[271],"identify":[273],"streamline":[277],"workflows.":[278],"Unlike":[279],"methods":[280],"reliant":[281],"expert":[283],"curation":[284],"substructure":[287],"patterns,":[288],"fully":[291],"evidence-driven,":[292],"automated,":[293],"self-improving":[294],"integration":[296],"additional":[298],"data,":[299],"focused":[301],"robust":[306],"respect":[308],"noise":[310],"errors,":[312],"skeptical":[314],"scanty":[316],"evidence.":[317]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":10},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":18},{"year":2019,"cited_by_count":18},{"year":2018,"cited_by_count":14},{"year":2017,"cited_by_count":15},{"year":2016,"cited_by_count":3}],"updated_date":"2026-08-23T07:36:19.812096","created_date":"2025-10-10T00:00:00"}
