{"id":"https://openalex.org/W2339091785","doi":"https://doi.org/10.1186/s13321-016-0131-9","title":"Geomfinder: a multi-feature identifier of similar three-dimensional protein patterns: a ligand-independent approach","display_name":"Geomfinder: a multi-feature identifier of similar three-dimensional protein patterns: a ligand-independent approach","publication_year":2016,"publication_date":"2016-04-18","ids":{"openalex":"https://openalex.org/W2339091785","doi":"https://doi.org/10.1186/s13321-016-0131-9","mag":"2339091785","pmid":"https://pubmed.ncbi.nlm.nih.gov/27092185"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-016-0131-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-016-0131-9","pdf_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/s13321-016-0131-9","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/s13321-016-0131-9","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5060716874","display_name":"Gabriel N\u00fa\u00f1ez","orcid":"https://orcid.org/0000-0002-2858-1789"},"institutions":[{"id":"https://openalex.org/I134695357","display_name":"University of Talca","ror":"https://ror.org/01s4gpq44","country_code":"CL","type":"education","lineage":["https://openalex.org/I134695357"]}],"countries":["CL"],"is_corresponding":true,"raw_author_name":"Gabriel N\u00fa\u00f1ez-Vivanco","raw_affiliation_strings":["Escuela de Ingenier\u00eda Civil en Bioinform\u00e1tica, Universidad de Talca, Avenida Lircay s/n, Talca, Chile ; Centro de Bioinform\u00e1tica y Simulaci\u00f3n Molecular, Universidad de Talca, 2 Norte 685, Talca, Chile","Escuela de Ingenier\u00eda Civil en Bioinform\u00e1tica, Universidad de Talca, Avenida Lircay s/n, Talca, Chile"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Escuela de Ingenier\u00eda Civil en Bioinform\u00e1tica, Universidad de Talca, Avenida Lircay s/n, Talca, Chile ; Centro de Bioinform\u00e1tica y Simulaci\u00f3n Molecular, Universidad de Talca, 2 Norte 685, Talca, Chile","institution_ids":["https://openalex.org/I134695357"]},{"raw_affiliation_string":"Escuela de Ingenier\u00eda Civil en Bioinform\u00e1tica, Universidad de Talca, Avenida Lircay s/n, Talca, Chile","institution_ids":["https://openalex.org/I134695357"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087949527","display_name":"Alejandro Vald\u00e9s-Jim\u00e9nez","orcid":"https://orcid.org/0000-0003-2345-5510"},"institutions":[{"id":"https://openalex.org/I134695357","display_name":"University of Talca","ror":"https://ror.org/01s4gpq44","country_code":"CL","type":"education","lineage":["https://openalex.org/I134695357"]}],"countries":["CL"],"is_corresponding":false,"raw_author_name":"Alejandro Vald\u00e9s-Jim\u00e9nez","raw_affiliation_strings":["Escuela de Ingenier\u00eda Civil en Bioinform\u00e1tica, Universidad de Talca, Avenida Lircay s/n, Talca, Chile"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Escuela de Ingenier\u00eda Civil en Bioinform\u00e1tica, Universidad de Talca, Avenida Lircay s/n, Talca, Chile","institution_ids":["https://openalex.org/I134695357"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086109060","display_name":"Felipe Besoa\u00edn","orcid":"https://orcid.org/0000-0002-2810-9433"},"institutions":[{"id":"https://openalex.org/I134695357","display_name":"University of Talca","ror":"https://ror.org/01s4gpq44","country_code":"CL","type":"education","lineage":["https://openalex.org/I134695357"]},{"id":"https://openalex.org/I138847295","display_name":"Universitat Oberta de Catalunya","ror":"https://ror.org/01f5wp925","country_code":"ES","type":"education","lineage":["https://openalex.org/I138847295"]}],"countries":["CL","ES"],"is_corresponding":false,"raw_author_name":"Felipe Besoa\u00edn","raw_affiliation_strings":["Escuela de Ingenier\u00eda Civil en Bioinform\u00e1tica, Universidad de Talca, Avenida Lircay s/n, Talca, Chile ; Estudis d'Inform\u00e1tica, Multimedia i Telecomunicacio, Universitat Oberta de Catalunya, Rambla del Poblenou 15, Barcelona, Spain ; Internet Interdisciplinary Institute (IN3), Universitat Oberta de Catalunya, Av. Carl Friedrich Gauss, 5, Castelldefels, Barcelona, Spain","Escuela de Ingenier\u00eda Civil en Bioinform\u00e1tica, Universidad de Talca, Avenida Lircay s/n, Talca, Chile"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Escuela de Ingenier\u00eda Civil en Bioinform\u00e1tica, Universidad de Talca, Avenida Lircay s/n, Talca, Chile ; Estudis d'Inform\u00e1tica, Multimedia i Telecomunicacio, Universitat Oberta de Catalunya, Rambla del Poblenou 15, Barcelona, Spain ; Internet Interdisciplinary Institute (IN3), Universitat Oberta de Catalunya, Av. Carl Friedrich Gauss, 5, Castelldefels, Barcelona, Spain","institution_ids":["https://openalex.org/I138847295"]},{"raw_affiliation_string":"Escuela de Ingenier\u00eda Civil en Bioinform\u00e1tica, Universidad de Talca, Avenida Lircay s/n, Talca, Chile","institution_ids":["https://openalex.org/I134695357"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5004785517","display_name":"Miguel Reyes\u2010Parada","orcid":"https://orcid.org/0000-0002-2376-990X"},"institutions":[{"id":"https://openalex.org/I10457146","display_name":"Universidad de Santiago de Chile","ror":"https://ror.org/02ma57s91","country_code":"CL","type":"education","lineage":["https://openalex.org/I10457146"]},{"id":"https://openalex.org/I3121512035","display_name":"Universidad Aut\u00f3noma de Chile","ror":"https://ror.org/010r9dy59","country_code":"CL","type":"education","lineage":["https://openalex.org/I3121512035"]},{"id":"https://openalex.org/I4210086410","display_name":"Universidad Bernardo O'Higgins","ror":"https://ror.org/00x0xhn70","country_code":"CL","type":"education","lineage":["https://openalex.org/I4210086410"]}],"countries":["CL"],"is_corresponding":true,"raw_author_name":"Miguel Reyes-Parada","raw_affiliation_strings":["School of Medicine, Faculty of Medical Sciences, Universidad de Santiago de Chile, Avenida Libertador Bernardo O'Higgins 3363, Santiago, Chile ; Facultad de Ciencias de la Salud, Universidad Auton\u00f3ma de Chile, 5 Poniente 1670, Talca, Chile","School of Medicine, Faculty of Medical Sciences, Universidad de Santiago de Chile, Avenida Libertador Bernardo O'Higgins 3363, Santiago, Chile"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Medicine, Faculty of Medical Sciences, Universidad de Santiago de Chile, Avenida Libertador Bernardo O'Higgins 3363, Santiago, Chile ; Facultad de Ciencias de la Salud, Universidad Auton\u00f3ma de Chile, 5 Poniente 1670, Talca, Chile","institution_ids":["https://openalex.org/I10457146","https://openalex.org/I3121512035","https://openalex.org/I4210086410"]},{"raw_affiliation_string":"School of Medicine, Faculty of Medical Sciences, Universidad de Santiago de Chile, Avenida Libertador Bernardo O'Higgins 3363, Santiago, Chile","institution_ids":["https://openalex.org/I10457146","https://openalex.org/I4210086410"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5004785517","https://openalex.org/A5060716874"],"corresponding_institution_ids":["https://openalex.org/I10457146","https://openalex.org/I134695357","https://openalex.org/I3121512035","https://openalex.org/I4210086410"],"apc_list":{"value":2390,"currency":"USD","value_usd":2390},"apc_paid":{"value":2390,"currency":"USD","value_usd":2390},"fwci":0.3208,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.65695619,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"8","issue":"1","first_page":"19","last_page":"19"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.3619000017642975,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.3619000017642975,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.35580000281333923,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.049400001764297485,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.755194365978241},{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.7473526000976562},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.6986628174781799},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5565353631973267},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.38616466522216797},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.35067954659461975}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.755194365978241},{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.7473526000976562},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.6986628174781799},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5565353631973267},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.38616466522216797},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.35067954659461975},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/s13321-016-0131-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-016-0131-9","pdf_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/s13321-016-0131-9","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:27092185","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27092185","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":"Journal Article"},{"id":"pmh:oai:dnet:orepositorio::63f68eb919afe925ca30f9d6baff7b23","is_oa":true,"landing_page_url":"http://hdl.handle.net/10609/78519","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:europepmc.org:3803070","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4834829","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13321-016-0131-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-016-0131-9","pdf_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/s13321-016-0131-9","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Reduced inequalities","score":0.5400000214576721,"id":"https://metadata.un.org/sdg/10"},{"display_name":"Peace, Justice and strong institutions","score":0.4699999988079071,"id":"https://metadata.un.org/sdg/16"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2339091785.pdf","grobid_xml":"https://content.openalex.org/works/W2339091785.grobid-xml"},"referenced_works_count":59,"referenced_works":["https://openalex.org/W103677414","https://openalex.org/W792740904","https://openalex.org/W1192028363","https://openalex.org/W1550145440","https://openalex.org/W1630585365","https://openalex.org/W1914481269","https://openalex.org/W1970981633","https://openalex.org/W1971618381","https://openalex.org/W1981254997","https://openalex.org/W1981700549","https://openalex.org/W1982459281","https://openalex.org/W1982481323","https://openalex.org/W1985176332","https://openalex.org/W1986046522","https://openalex.org/W1992243758","https://openalex.org/W1996423252","https://openalex.org/W2000875617","https://openalex.org/W2003364609","https://openalex.org/W2004175162","https://openalex.org/W2006436808","https://openalex.org/W2015147525","https://openalex.org/W2015461045","https://openalex.org/W2019951137","https://openalex.org/W2024770800","https://openalex.org/W2024993723","https://openalex.org/W2037525379","https://openalex.org/W2038660913","https://openalex.org/W2039636022","https://openalex.org/W2040595595","https://openalex.org/W2041205020","https://openalex.org/W2046376309","https://openalex.org/W2060109055","https://openalex.org/W2060374421","https://openalex.org/W2062804020","https://openalex.org/W2072287929","https://openalex.org/W2077180051","https://openalex.org/W2080653934","https://openalex.org/W2086380285","https://openalex.org/W2090003233","https://openalex.org/W2091861424","https://openalex.org/W2095513663","https://openalex.org/W2097270746","https://openalex.org/W2104622728","https://openalex.org/W2110319068","https://openalex.org/W2112109058","https://openalex.org/W2113494611","https://openalex.org/W2119470100","https://openalex.org/W2121900866","https://openalex.org/W2127067710","https://openalex.org/W2127866370","https://openalex.org/W2128402268","https://openalex.org/W2130479394","https://openalex.org/W2133035849","https://openalex.org/W2152500739","https://openalex.org/W2167338363","https://openalex.org/W2169815691","https://openalex.org/W2204075485","https://openalex.org/W2211863317","https://openalex.org/W2333841044"],"related_works":["https://openalex.org/W4378651134","https://openalex.org/W1979633005","https://openalex.org/W2352307597","https://openalex.org/W2163724607","https://openalex.org/W1980092392","https://openalex.org/W2608983118","https://openalex.org/W4318812462","https://openalex.org/W37347591","https://openalex.org/W2118976126","https://openalex.org/W4252684102"],"abstract_inverted_index":{"BACKGROUND:":[0],"Since":[1],"the":[2,10,12,36,68,84,96,120,229,273,281,325,333,357],"structure":[3],"of":[4,14,22,38,83,100,122,153,158,177,199,205,216,222,245,251,276,283,300,306,320,324,346,360,367],"proteins":[5,178,206],"is":[6,335,377],"more":[7],"conserved":[8,15],"than":[9],"sequence,":[11],"identification":[13],"three-dimensional":[16],"(3D)":[17],"patterns":[18,51,108,131,160,218,265,295,315,369],"among":[19,243,327],"a":[20,61,197,220,304,343,364,372],"set":[21],"proteins,":[23,202,347],"can":[24,207,349],"be":[25,208,350],"important":[26,106],"for":[27,150,338],"protein":[28,31,85,135,166,172,188,246,321,375],"function":[29],"prediction,":[30],"clustering,":[32],"drug":[33],"discovery":[34],"and":[35,48,98,128,146,259,292],"establishment":[37],"evolutionary":[39],"relationships.":[40],"Thus,":[41],"several":[42],"computational":[43],"applications":[44],"to":[45,126,174,228,288,297],"identify,":[46],"describe":[47],"compare":[49,129],"3D":[50,62,107,130,159,217,264,294,314,368],"(or":[52],"motifs)":[53],"have":[54],"been":[55],"developed.":[56],"Often,":[57],"these":[58,185,236,262],"tools":[59],"consider":[60],"pattern":[63],"as":[64,110,254,356],"that":[65],"described":[66],"by":[67],"residues":[69],"surrounding":[70],"co-crystallized/docked":[71],"ligands":[72],"available":[73,134],"from":[74],"X-ray":[75],"crystal":[76],"structures":[77,86,173,247],"or":[78],"homology":[79],"models.":[80],"Nevertheless,":[81],"many":[82],"stored":[87],"in":[88,132,162,191,196,219,303,342,353],"public":[89],"databases":[90],"do":[91],"not":[92,267,336],"provide":[93],"information":[94],"about":[95],"location":[97],"characteristics":[99],"ligand":[101,232],"binding":[102,233,298],"sites":[103,234,299],"and/or":[104],"other":[105],"such":[109,253,355],"allosteric":[111],"sites,":[112],"enzyme-cofactor":[113],"interaction":[114],"motifs,":[115],"etc.":[116],"This":[117],"makes":[118],"necessary":[119],"development":[121],"new":[123],"ligand-independent":[124,147],"methods":[125],"search":[127],"all":[133,156],"structures.":[136,167],"RESULTS:":[137],"Here":[138],"we":[139,239],"introduce":[140],"Geomfinder,":[141,284],"an":[142],"intuitive,":[143],"flexible,":[144],"alignment-free":[145],"web":[148],"server":[149],"detailed":[151,274,365],"estimation":[152],"similarities":[154,242,370],"between":[155,290,316,371],"pairs":[157,176,204,215,244],"detected":[161,213,268],"any":[163,317],"two":[164,318],"given":[165],"We":[168],"used":[169],"around":[170],"1100":[171],"form":[175],"which":[179,226,248,285],"were":[180],"assessed":[181],"with":[182],"Geomfinder.":[183],"In":[184],"analyses":[186],"each":[187],"was":[189,286],"considered":[190],"only":[192],"one":[193],"pair":[194,319],"(e.g.":[195],"subset":[198],"100":[200],"different":[201,293],"50":[203],"defined).":[209],"Thus:":[210],"(a)":[211],"Geomfinder":[212,310],"identical":[214],"series":[221],"monoamine":[223],"oxidase-B":[224],"structures,":[225,322],"corresponded":[227],"effectively":[230],"similar":[231,263,291,313],"at":[235],"proteins;":[237],"(b)":[238],"identified":[240],"structural":[241],"are":[249,266],"targets":[250,376],"compounds":[252],"acarbose,":[255],"benzamidine,":[256],"adenosine":[257],"triphosphate":[258],"pyridoxal":[260],"phosphate;":[261],"using":[269],"sequence-based":[270],"methods;":[271],"(c)":[272],"evaluation":[275],"three":[277],"specific":[278],"cases":[279,354],"showed":[280],"versatility":[282],"able":[287],"discriminate":[289],"related":[296],"common":[301],"substrates":[302],"range":[305],"diverse":[307],"proteins.":[308],"CONCLUSIONS:":[309],"allows":[311],"detecting":[312],"regardless":[323],"divergency":[326],"their":[328],"amino":[329],"acids":[330],"sequences.":[331],"Although":[332],"software":[334],"intended":[337],"simultaneous":[339],"multiple":[340],"comparisons":[341],"large":[344],"number":[345],"it":[348],"particularly":[351],"useful":[352],"structure-based":[358],"design":[359],"multitarget":[361],"drugs,":[362],"where":[363],"analysis":[366],"few":[373],"selected":[374],"essential.":[378]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":1}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
