{"id":"https://openalex.org/W2339091785","doi":"https://doi.org/10.1186/s13321-016-0131-9","title":"Geomfinder: a multi-feature identifier of similar three-dimensional protein patterns: a ligand-independent approach","display_name":"Geomfinder: a multi-feature identifier of similar three-dimensional protein patterns: a ligand-independent approach","publication_year":2016,"publication_date":"2016-04-18","ids":{"openalex":"https://openalex.org/W2339091785","doi":"https://doi.org/10.1186/s13321-016-0131-9","mag":"2339091785","pmid":"https://pubmed.ncbi.nlm.nih.gov/27092185"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-016-0131-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-016-0131-9","pdf_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/s13321-016-0131-9","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/s13321-016-0131-9","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5060716874","display_name":"Gabriel N\u00fa\u00f1ez","orcid":"https://orcid.org/0000-0002-2858-1789"},"institutions":[{"id":"https://openalex.org/I134695357","display_name":"University of Talca","ror":"https://ror.org/01s4gpq44","country_code":"CL","type":"education","lineage":["https://openalex.org/I134695357"]}],"countries":["CL"],"is_corresponding":true,"raw_author_name":"Gabriel N\u00fa\u00f1ez-Vivanco","raw_affiliation_strings":["Escuela de Ingenier\u00eda Civil en Bioinform\u00e1tica, Universidad de Talca, Avenida Lircay s/n, Talca, Chile ; Centro de Bioinform\u00e1tica y Simulaci\u00f3n Molecular, Universidad de Talca, 2 Norte 685, Talca, Chile","Escuela de Ingenier\u00eda Civil en Bioinform\u00e1tica, Universidad de Talca, Avenida Lircay s/n, Talca, Chile"],"affiliations":[{"raw_affiliation_string":"Escuela de Ingenier\u00eda Civil en Bioinform\u00e1tica, Universidad de Talca, Avenida Lircay s/n, Talca, Chile ; Centro de Bioinform\u00e1tica y Simulaci\u00f3n Molecular, Universidad de Talca, 2 Norte 685, Talca, Chile","institution_ids":[]},{"raw_affiliation_string":"Escuela de Ingenier\u00eda Civil en Bioinform\u00e1tica, Universidad de Talca, Avenida Lircay s/n, Talca, Chile","institution_ids":["https://openalex.org/I134695357"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087949527","display_name":"Alejandro Vald\u00e9s-Jim\u00e9nez","orcid":"https://orcid.org/0000-0003-2345-5510"},"institutions":[{"id":"https://openalex.org/I134695357","display_name":"University of Talca","ror":"https://ror.org/01s4gpq44","country_code":"CL","type":"education","lineage":["https://openalex.org/I134695357"]}],"countries":["CL"],"is_corresponding":false,"raw_author_name":"Alejandro Vald\u00e9s-Jim\u00e9nez","raw_affiliation_strings":["Escuela de Ingenier\u00eda Civil en Bioinform\u00e1tica, Universidad de Talca, Avenida Lircay s/n, Talca, Chile"],"affiliations":[{"raw_affiliation_string":"Escuela de Ingenier\u00eda Civil en Bioinform\u00e1tica, Universidad de Talca, Avenida Lircay s/n, Talca, Chile","institution_ids":["https://openalex.org/I134695357"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086109060","display_name":"Felipe Besoa\u00edn","orcid":"https://orcid.org/0000-0002-2810-9433"},"institutions":[{"id":"https://openalex.org/I134695357","display_name":"University of Talca","ror":"https://ror.org/01s4gpq44","country_code":"CL","type":"education","lineage":["https://openalex.org/I134695357"]}],"countries":["CL"],"is_corresponding":false,"raw_author_name":"Felipe Besoa\u00edn","raw_affiliation_strings":["Escuela de Ingenier\u00eda Civil en Bioinform\u00e1tica, Universidad de Talca, Avenida Lircay s/n, Talca, Chile ; Estudis d'Inform\u00e1tica, Multimedia i Telecomunicacio, Universitat Oberta de Catalunya, Rambla del Poblenou 15, Barcelona, Spain ; Internet Interdisciplinary Institute (IN3), Universitat Oberta de Catalunya, Av. Carl Friedrich Gauss, 5, Castelldefels, Barcelona, Spain","Escuela de Ingenier\u00eda Civil en Bioinform\u00e1tica, Universidad de Talca, Avenida Lircay s/n, Talca, Chile"],"affiliations":[{"raw_affiliation_string":"Escuela de Ingenier\u00eda Civil en Bioinform\u00e1tica, Universidad de Talca, Avenida Lircay s/n, Talca, Chile ; Estudis d'Inform\u00e1tica, Multimedia i Telecomunicacio, Universitat Oberta de Catalunya, Rambla del Poblenou 15, Barcelona, Spain ; Internet Interdisciplinary Institute (IN3), Universitat Oberta de Catalunya, Av. Carl Friedrich Gauss, 5, Castelldefels, Barcelona, Spain","institution_ids":[]},{"raw_affiliation_string":"Escuela de Ingenier\u00eda Civil en Bioinform\u00e1tica, Universidad de Talca, Avenida Lircay s/n, Talca, Chile","institution_ids":["https://openalex.org/I134695357"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5004785517","display_name":"Miguel Reyes\u2010Parada","orcid":"https://orcid.org/0000-0002-2376-990X"},"institutions":[{"id":"https://openalex.org/I10457146","display_name":"Universidad de Santiago de Chile","ror":"https://ror.org/02ma57s91","country_code":"CL","type":"education","lineage":["https://openalex.org/I10457146"]},{"id":"https://openalex.org/I4210086410","display_name":"Universidad Bernardo O'Higgins","ror":"https://ror.org/00x0xhn70","country_code":"CL","type":"education","lineage":["https://openalex.org/I4210086410"]}],"countries":["CL"],"is_corresponding":true,"raw_author_name":"Miguel Reyes-Parada","raw_affiliation_strings":["School of Medicine, Faculty of Medical Sciences, Universidad de Santiago de Chile, Avenida Libertador Bernardo O'Higgins 3363, Santiago, Chile ; Facultad de Ciencias de la Salud, Universidad Auton\u00f3ma de Chile, 5 Poniente 1670, Talca, Chile","School of Medicine, Faculty of Medical Sciences, Universidad de Santiago de Chile, Avenida Libertador Bernardo O'Higgins 3363, Santiago, Chile"],"affiliations":[{"raw_affiliation_string":"School of Medicine, Faculty of Medical Sciences, Universidad de Santiago de Chile, Avenida Libertador Bernardo O'Higgins 3363, Santiago, Chile ; Facultad de Ciencias de la Salud, Universidad Auton\u00f3ma de Chile, 5 Poniente 1670, Talca, Chile","institution_ids":[]},{"raw_affiliation_string":"School of Medicine, Faculty of Medical Sciences, Universidad de Santiago de Chile, Avenida Libertador Bernardo O'Higgins 3363, Santiago, Chile","institution_ids":["https://openalex.org/I4210086410","https://openalex.org/I10457146"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5004785517","https://openalex.org/A5060716874"],"corresponding_institution_ids":["https://openalex.org/I10457146","https://openalex.org/I134695357","https://openalex.org/I4210086410"],"apc_list":{"value":1290,"currency":"GBP","value_usd":1582},"apc_paid":{"value":1290,"currency":"GBP","value_usd":1582},"fwci":0.3486,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.68076596,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"8","issue":"1","first_page":"19","last_page":"19"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9925000071525574,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9925000071525574,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9904000163078308,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9887999892234802,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.755194365978241},{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.7473526000976562},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.6986628174781799},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5565353631973267},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.38616466522216797},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.35067954659461975}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.755194365978241},{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.7473526000976562},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.6986628174781799},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5565353631973267},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.38616466522216797},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.35067954659461975},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/s13321-016-0131-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-016-0131-9","pdf_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/s13321-016-0131-9","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:27092185","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27092185","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:recercat.cat:2072/319143","is_oa":true,"landing_page_url":"http://hdl.handle.net/10609/78519","pdf_url":null,"source":{"id":"https://openalex.org/S4306402147","display_name":"RECERCAT (Consorci de Serveis Universitaris de Catalunya)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210090028","host_organization_name":"Consorci de Serveis Universitaris de Catalunya","host_organization_lineage":["https://openalex.org/I4210090028"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:europepmc.org:3803070","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4834829","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13321-016-0131-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-016-0131-9","pdf_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/s13321-016-0131-9","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5400000214576721,"id":"https://metadata.un.org/sdg/10","display_name":"Reduced inequalities"},{"score":0.4699999988079071,"id":"https://metadata.un.org/sdg/16","display_name":"Peace, Justice and strong institutions"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2339091785.pdf","grobid_xml":"https://content.openalex.org/works/W2339091785.grobid-xml"},"referenced_works_count":59,"referenced_works":["https://openalex.org/W103677414","https://openalex.org/W792740904","https://openalex.org/W1192028363","https://openalex.org/W1550145440","https://openalex.org/W1630585365","https://openalex.org/W1914481269","https://openalex.org/W1970981633","https://openalex.org/W1971618381","https://openalex.org/W1981254997","https://openalex.org/W1981700549","https://openalex.org/W1982459281","https://openalex.org/W1982481323","https://openalex.org/W1985176332","https://openalex.org/W1986046522","https://openalex.org/W1992243758","https://openalex.org/W1996423252","https://openalex.org/W2000875617","https://openalex.org/W2003364609","https://openalex.org/W2004175162","https://openalex.org/W2006436808","https://openalex.org/W2015147525","https://openalex.org/W2015461045","https://openalex.org/W2019951137","https://openalex.org/W2024770800","https://openalex.org/W2024993723","https://openalex.org/W2037525379","https://openalex.org/W2038660913","https://openalex.org/W2039636022","https://openalex.org/W2040595595","https://openalex.org/W2041205020","https://openalex.org/W2046376309","https://openalex.org/W2060109055","https://openalex.org/W2060374421","https://openalex.org/W2062804020","https://openalex.org/W2072287929","https://openalex.org/W2077180051","https://openalex.org/W2080653934","https://openalex.org/W2086380285","https://openalex.org/W2090003233","https://openalex.org/W2091861424","https://openalex.org/W2095513663","https://openalex.org/W2097270746","https://openalex.org/W2104622728","https://openalex.org/W2110319068","https://openalex.org/W2112109058","https://openalex.org/W2113494611","https://openalex.org/W2119470100","https://openalex.org/W2121900866","https://openalex.org/W2127067710","https://openalex.org/W2127866370","https://openalex.org/W2128402268","https://openalex.org/W2130479394","https://openalex.org/W2133035849","https://openalex.org/W2152500739","https://openalex.org/W2167338363","https://openalex.org/W2169815691","https://openalex.org/W2204075485","https://openalex.org/W2211863317","https://openalex.org/W2333841044"],"related_works":["https://openalex.org/W4378651134","https://openalex.org/W1979633005","https://openalex.org/W2352307597","https://openalex.org/W2163724607","https://openalex.org/W1980092392","https://openalex.org/W2608983118","https://openalex.org/W4318812462","https://openalex.org/W37347591","https://openalex.org/W2118976126","https://openalex.org/W4252684102"],"abstract_inverted_index":{"Geomfinder":[0],"allows":[1],"detecting":[2],"similar":[3],"3D":[4,58],"patterns":[5,59],"between":[6,61],"any":[7],"two":[8],"pair":[9],"of":[10,14,36,50,57],"protein":[11,65],"structures,":[12],"regardless":[13],"the":[15,23,47],"divergency":[16],"among":[17],"their":[18],"amino":[19],"acids":[20],"sequences.":[21],"Although":[22],"software":[24],"is":[25,67],"not":[26],"intended":[27],"for":[28],"simultaneous":[29],"multiple":[30],"comparisons":[31],"in":[32,43],"a":[33,54,62],"large":[34],"number":[35],"proteins,":[37],"it":[38],"can":[39],"be":[40],"particularly":[41],"useful":[42],"cases":[44],"such":[45],"as":[46],"structure-based":[48],"design":[49],"multitarget":[51],"drugs,":[52],"where":[53],"detailed":[55],"analysis":[56],"similarities":[60],"few":[63],"selected":[64],"targets":[66],"essential.":[68]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
