{"id":"https://openalex.org/W2207769928","doi":"https://doi.org/10.1186/s13321-015-0111-5","title":"Smiles2Monomers: a link between chemical and biological structures for polymers","display_name":"Smiles2Monomers: a link between chemical and biological structures for polymers","publication_year":2015,"publication_date":"2015-12-01","ids":{"openalex":"https://openalex.org/W2207769928","doi":"https://doi.org/10.1186/s13321-015-0111-5","mag":"2207769928","pmid":"https://pubmed.ncbi.nlm.nih.gov/26715946"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-015-0111-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-015-0111-5","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-015-0111-5","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-015-0111-5","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018499801","display_name":"Yoann Dufresne","orcid":"https://orcid.org/0000-0002-0930-8920"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2279609970","display_name":"Universit\u00e9 de Lille","ror":"https://ror.org/02kzqn938","country_code":"FR","type":"education","lineage":["https://openalex.org/I2279609970"]},{"id":"https://openalex.org/I4210115519","display_name":"Centre de Recherche en Informatique","ror":"https://ror.org/020cdve92","country_code":"FR","type":"facility","lineage":["https://openalex.org/I190752583","https://openalex.org/I2746051580","https://openalex.org/I4210091621","https://openalex.org/I4210115519","https://openalex.org/I70768539"]},{"id":"https://openalex.org/I4210138412","display_name":"Centre Inria de l'Universit\u00e9 de Lille","ror":"https://ror.org/04eej9726","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1326498283","https://openalex.org/I4210138412"]},{"id":"https://openalex.org/I4387153239","display_name":"Centre de Recherche en Informatique, Signal et Automatique de Lille","ror":"https://ror.org/05vrs3189","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I2279609970","https://openalex.org/I4387153239","https://openalex.org/I7454413"]},{"id":"https://openalex.org/I7454413","display_name":"\u00c9cole Centrale de Lille","ror":"https://ror.org/01x441g73","country_code":"FR","type":"education","lineage":["https://openalex.org/I7454413"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Yoann Dufresne","raw_affiliation_strings":["Univ. Lille, CNRS, Centrale Lille, UMR 9189-CRIStAL-Centre de Recherche en Informatique Signal et Automatique de Lille, 59000 Lille, France ; Inria Lille Nord Europe, Bonsai team, Parc scientifique de la Haute Borne, 40 avenue Halley, 59650 Villeneuve d'Ascq, France","BONSAI - Bioinformatics and Sequence Analysis (France)","CRIStAL - Centre de Recherche en Informatique, Signal et Automatique de Lille - UMR 9189 (Universit\u00e9 de Lille - Campus scientifique - B\u00e2timent ESPRIT - Avenue Henri Poincar\u00e9 - 59655 Villeneuve d\u2019Ascq - France)"],"raw_orcid":"https://orcid.org/0000-0002-0930-8920","affiliations":[{"raw_affiliation_string":"Univ. Lille, CNRS, Centrale Lille, UMR 9189-CRIStAL-Centre de Recherche en Informatique Signal et Automatique de Lille, 59000 Lille, France ; Inria Lille Nord Europe, Bonsai team, Parc scientifique de la Haute Borne, 40 avenue Halley, 59650 Villeneuve d'Ascq, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I2279609970","https://openalex.org/I4210115519","https://openalex.org/I4210138412","https://openalex.org/I4387153239","https://openalex.org/I7454413"]},{"raw_affiliation_string":"BONSAI - Bioinformatics and Sequence Analysis (France)","institution_ids":[]},{"raw_affiliation_string":"CRIStAL - Centre de Recherche en Informatique, Signal et Automatique de Lille - UMR 9189 (Universit\u00e9 de Lille - Campus scientifique - B\u00e2timent ESPRIT - Avenue Henri Poincar\u00e9 - 59655 Villeneuve d\u2019Ascq - France)","institution_ids":["https://openalex.org/I2279609970","https://openalex.org/I4210115519","https://openalex.org/I4387153239"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055679303","display_name":"Laurent No\u00e9","orcid":"https://orcid.org/0000-0002-1170-8376"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2279609970","display_name":"Universit\u00e9 de Lille","ror":"https://ror.org/02kzqn938","country_code":"FR","type":"education","lineage":["https://openalex.org/I2279609970"]},{"id":"https://openalex.org/I4210115519","display_name":"Centre de Recherche en Informatique","ror":"https://ror.org/020cdve92","country_code":"FR","type":"facility","lineage":["https://openalex.org/I190752583","https://openalex.org/I2746051580","https://openalex.org/I4210091621","https://openalex.org/I4210115519","https://openalex.org/I70768539"]},{"id":"https://openalex.org/I4210138412","display_name":"Centre Inria de l'Universit\u00e9 de Lille","ror":"https://ror.org/04eej9726","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1326498283","https://openalex.org/I4210138412"]},{"id":"https://openalex.org/I4387153239","display_name":"Centre de Recherche en Informatique, Signal et Automatique de Lille","ror":"https://ror.org/05vrs3189","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I2279609970","https://openalex.org/I4387153239","https://openalex.org/I7454413"]},{"id":"https://openalex.org/I7454413","display_name":"\u00c9cole Centrale de Lille","ror":"https://ror.org/01x441g73","country_code":"FR","type":"education","lineage":["https://openalex.org/I7454413"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Laurent No\u00e9","raw_affiliation_strings":["Univ. Lille, CNRS, Centrale Lille, UMR 9189-CRIStAL-Centre de Recherche en Informatique Signal et Automatique de Lille, 59000 Lille, France ; Inria Lille Nord Europe, Bonsai team, Parc scientifique de la Haute Borne, 40 avenue Halley, 59650 Villeneuve d'Ascq, France","BONSAI - Bioinformatics and Sequence Analysis (France)","CRIStAL - Centre de Recherche en Informatique, Signal et Automatique de Lille - UMR 9189 (Universit\u00e9 de Lille - Campus scientifique - B\u00e2timent ESPRIT - Avenue Henri Poincar\u00e9 - 59655 Villeneuve d\u2019Ascq - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Univ. Lille, CNRS, Centrale Lille, UMR 9189-CRIStAL-Centre de Recherche en Informatique Signal et Automatique de Lille, 59000 Lille, France ; Inria Lille Nord Europe, Bonsai team, Parc scientifique de la Haute Borne, 40 avenue Halley, 59650 Villeneuve d'Ascq, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I2279609970","https://openalex.org/I4210115519","https://openalex.org/I4210138412","https://openalex.org/I4387153239","https://openalex.org/I7454413"]},{"raw_affiliation_string":"BONSAI - Bioinformatics and Sequence Analysis (France)","institution_ids":[]},{"raw_affiliation_string":"CRIStAL - Centre de Recherche en Informatique, Signal et Automatique de Lille - UMR 9189 (Universit\u00e9 de Lille - Campus scientifique - B\u00e2timent ESPRIT - Avenue Henri Poincar\u00e9 - 59655 Villeneuve d\u2019Ascq - France)","institution_ids":["https://openalex.org/I2279609970","https://openalex.org/I4210115519","https://openalex.org/I4387153239"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088172788","display_name":"Val\u00e9rie Lecl\u00e8re","orcid":"https://orcid.org/0000-0003-2463-5361"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2279609970","display_name":"Universit\u00e9 de Lille","ror":"https://ror.org/02kzqn938","country_code":"FR","type":"education","lineage":["https://openalex.org/I2279609970"]},{"id":"https://openalex.org/I4210091574","display_name":"Institut Charles Viollette","ror":"https://ror.org/0018c4h73","country_code":"FR","type":"facility","lineage":["https://openalex.org/I2279609970","https://openalex.org/I2802487185","https://openalex.org/I4210091574","https://openalex.org/I4210116330","https://openalex.org/I44563897"]},{"id":"https://openalex.org/I4210115519","display_name":"Centre de Recherche en Informatique","ror":"https://ror.org/020cdve92","country_code":"FR","type":"facility","lineage":["https://openalex.org/I190752583","https://openalex.org/I2746051580","https://openalex.org/I4210091621","https://openalex.org/I4210115519","https://openalex.org/I70768539"]},{"id":"https://openalex.org/I4210154774","display_name":"Polytech Lille","ror":"https://ror.org/05339ng12","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210154774"]},{"id":"https://openalex.org/I4387153239","display_name":"Centre de Recherche en Informatique, Signal et Automatique de Lille","ror":"https://ror.org/05vrs3189","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I2279609970","https://openalex.org/I4387153239","https://openalex.org/I7454413"]},{"id":"https://openalex.org/I44563897","display_name":"Universit\u00e9 d'Artois","ror":"https://ror.org/053x9s498","country_code":"FR","type":"education","lineage":["https://openalex.org/I44563897"]},{"id":"https://openalex.org/I7454413","display_name":"\u00c9cole Centrale de Lille","ror":"https://ror.org/01x441g73","country_code":"FR","type":"education","lineage":["https://openalex.org/I7454413"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Val\u00e9rie Lecl\u00e8re","raw_affiliation_strings":["Univ. Lille, CNRS, Centrale Lille, UMR 9189-CRIStAL-Centre de Recherche en Informatique Signal et Automatique de Lille, 59000 Lille, France ; Inria Lille Nord Europe, Bonsai team, Parc scientifique de la Haute Borne, 40 avenue Halley, 59650 Villeneuve d'Ascq, France ; Univ. Lille, INRA, ISA, Univ. Artois, Univ. Littoral C\u00f4te d'Opale, EA 7394 - ICV - Institut Charles Viollette, 59000 Lille, France","BONSAI - Bioinformatics and Sequence Analysis (France)","CRIStAL - Centre de Recherche en Informatique, Signal et Automatique de Lille - UMR 9189 (Universit\u00e9 de Lille - Campus scientifique - B\u00e2timent ESPRIT - Avenue Henri Poincar\u00e9 - 59655 Villeneuve d\u2019Ascq - France)","ICV - Institut Charles Viollette (ICV) - EA 7394 (Polytech'Lille\r\nAvenue Paul Langevin - Cit\u00e9 Scientifique\r\n59655 Villeneuve d'Ascq - France - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Univ. Lille, CNRS, Centrale Lille, UMR 9189-CRIStAL-Centre de Recherche en Informatique Signal et Automatique de Lille, 59000 Lille, France ; Inria Lille Nord Europe, Bonsai team, Parc scientifique de la Haute Borne, 40 avenue Halley, 59650 Villeneuve d'Ascq, France ; Univ. Lille, INRA, ISA, Univ. Artois, Univ. Littoral C\u00f4te d'Opale, EA 7394 - ICV - Institut Charles Viollette, 59000 Lille, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I2279609970","https://openalex.org/I4210091574","https://openalex.org/I4387153239","https://openalex.org/I44563897","https://openalex.org/I7454413"]},{"raw_affiliation_string":"BONSAI - Bioinformatics and Sequence Analysis (France)","institution_ids":[]},{"raw_affiliation_string":"CRIStAL - Centre de Recherche en Informatique, Signal et Automatique de Lille - UMR 9189 (Universit\u00e9 de Lille - Campus scientifique - B\u00e2timent ESPRIT - Avenue Henri Poincar\u00e9 - 59655 Villeneuve d\u2019Ascq - France)","institution_ids":["https://openalex.org/I2279609970","https://openalex.org/I4210115519","https://openalex.org/I4387153239"]},{"raw_affiliation_string":"ICV - Institut Charles Viollette (ICV) - EA 7394 (Polytech'Lille\r\nAvenue Paul Langevin - Cit\u00e9 Scientifique\r\n59655 Villeneuve d'Ascq - France - France)","institution_ids":["https://openalex.org/I4210091574","https://openalex.org/I4210154774"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5024994641","display_name":"Maude Pupin","orcid":"https://orcid.org/0000-0003-3197-0715"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2279609970","display_name":"Universit\u00e9 de Lille","ror":"https://ror.org/02kzqn938","country_code":"FR","type":"education","lineage":["https://openalex.org/I2279609970"]},{"id":"https://openalex.org/I4210115519","display_name":"Centre de Recherche en Informatique","ror":"https://ror.org/020cdve92","country_code":"FR","type":"facility","lineage":["https://openalex.org/I190752583","https://openalex.org/I2746051580","https://openalex.org/I4210091621","https://openalex.org/I4210115519","https://openalex.org/I70768539"]},{"id":"https://openalex.org/I4210138412","display_name":"Centre Inria de l'Universit\u00e9 de Lille","ror":"https://ror.org/04eej9726","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1326498283","https://openalex.org/I4210138412"]},{"id":"https://openalex.org/I4387153239","display_name":"Centre de Recherche en Informatique, Signal et Automatique de Lille","ror":"https://ror.org/05vrs3189","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I2279609970","https://openalex.org/I4387153239","https://openalex.org/I7454413"]},{"id":"https://openalex.org/I7454413","display_name":"\u00c9cole Centrale de Lille","ror":"https://ror.org/01x441g73","country_code":"FR","type":"education","lineage":["https://openalex.org/I7454413"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Maude Pupin","raw_affiliation_strings":["Univ. Lille, CNRS, Centrale Lille, UMR 9189-CRIStAL-Centre de Recherche en Informatique Signal et Automatique de Lille, 59000 Lille, France ; Inria Lille Nord Europe, Bonsai team, Parc scientifique de la Haute Borne, 40 avenue Halley, 59650 Villeneuve d'Ascq, France","BONSAI - Bioinformatics and Sequence Analysis (France)","CRIStAL - Centre de Recherche en Informatique, Signal et Automatique de Lille - UMR 9189 (Universit\u00e9 de Lille - Campus scientifique - B\u00e2timent ESPRIT - Avenue Henri Poincar\u00e9 - 59655 Villeneuve d\u2019Ascq - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Univ. Lille, CNRS, Centrale Lille, UMR 9189-CRIStAL-Centre de Recherche en Informatique Signal et Automatique de Lille, 59000 Lille, France ; Inria Lille Nord Europe, Bonsai team, Parc scientifique de la Haute Borne, 40 avenue Halley, 59650 Villeneuve d'Ascq, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I2279609970","https://openalex.org/I4210115519","https://openalex.org/I4210138412","https://openalex.org/I4387153239","https://openalex.org/I7454413"]},{"raw_affiliation_string":"BONSAI - Bioinformatics and Sequence Analysis (France)","institution_ids":[]},{"raw_affiliation_string":"CRIStAL - Centre de Recherche en Informatique, Signal et Automatique de Lille - UMR 9189 (Universit\u00e9 de Lille - Campus scientifique - B\u00e2timent ESPRIT - Avenue Henri Poincar\u00e9 - 59655 Villeneuve d\u2019Ascq - France)","institution_ids":["https://openalex.org/I2279609970","https://openalex.org/I4210115519","https://openalex.org/I4387153239"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":2390,"currency":"USD","value_usd":2390},"apc_paid":{"value":2390,"currency":"USD","value_usd":2390},"fwci":0.6938,"has_fulltext":true,"cited_by_count":15,"citation_normalized_percentile":{"value":0.70418648,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"7","issue":"1","first_page":"62","last_page":"62"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.31349998712539673,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.31349998712539673,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.09359999746084213,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.08810000121593475,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/link","display_name":"Link (geometry)","score":0.7131351232528687},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5708089470863342},{"id":"https://openalex.org/keywords/cross-link","display_name":"Cross-link","score":0.5410081744194031},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4590533971786499},{"id":"https://openalex.org/keywords/polymer","display_name":"Polymer","score":0.34059056639671326},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.21037551760673523},{"id":"https://openalex.org/keywords/computer-network","display_name":"Computer network","score":0.13113215565681458},{"id":"https://openalex.org/keywords/organic-chemistry","display_name":"Organic chemistry","score":0.09067240357398987}],"concepts":[{"id":"https://openalex.org/C2778753846","wikidata":"https://www.wikidata.org/wiki/Q6554239","display_name":"Link (geometry)","level":2,"score":0.7131351232528687},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5708089470863342},{"id":"https://openalex.org/C142708767","wikidata":"https://www.wikidata.org/wiki/Q898597","display_name":"Cross-link","level":3,"score":0.5410081744194031},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4590533971786499},{"id":"https://openalex.org/C521977710","wikidata":"https://www.wikidata.org/wiki/Q81163","display_name":"Polymer","level":2,"score":0.34059056639671326},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.21037551760673523},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.13113215565681458},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.09067240357398987}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1186/s13321-015-0111-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-015-0111-5","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-015-0111-5","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:26715946","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26715946","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":"Journal Article"},{"id":"pmh:oai:europepmc.org:3664939","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4693424","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:HAL:hal-01250619v1","is_oa":true,"landing_page_url":"https://inria.hal.science/hal-01250619","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Cheminformatics, 2015, 7, &#x27E8;10.1186/s13321-015-0111-5&#x27E9;","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:lilloa.univ-lille.fr:20.500.12210/25182","is_oa":true,"landing_page_url":"http://hdl.handle.net/20.500.12210/25182","pdf_url":null,"source":{"id":"https://openalex.org/S4306402203","display_name":"LillOA (Universit\u00e9 de Lille (University Of Lille))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210123514","host_organization_name":"Centre d'Etudes en Civilisations, Langues et Litt\u00e9ratures Etrang\u00e8res","host_organization_lineage":["https://openalex.org/I4210123514"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1186/s13321-015-0111-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-015-0111-5","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-015-0111-5","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320316137","display_name":"Universit\u00e9 de Lille","ror":"https://ror.org/02kzqn938"},{"id":"https://openalex.org/F4320324737","display_name":"Universit\u00e9 Lille 1 - Sciences et Technologies","ror":"https://ror.org/040hwdc70"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2207769928.pdf","grobid_xml":"https://content.openalex.org/works/W2207769928.grobid-xml"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W1479848599","https://openalex.org/W1601495365","https://openalex.org/W1937222985","https://openalex.org/W1975147762","https://openalex.org/W1982870104","https://openalex.org/W1991286793","https://openalex.org/W1992349989","https://openalex.org/W1995808589","https://openalex.org/W1998997530","https://openalex.org/W2000589020","https://openalex.org/W2001958216","https://openalex.org/W2011039300","https://openalex.org/W2011700260","https://openalex.org/W2013964846","https://openalex.org/W2018992388","https://openalex.org/W2022476850","https://openalex.org/W2033757486","https://openalex.org/W2040535930","https://openalex.org/W2056477044","https://openalex.org/W2082603400","https://openalex.org/W2083958948","https://openalex.org/W2091950883","https://openalex.org/W2092904196","https://openalex.org/W2103626206","https://openalex.org/W2114363966","https://openalex.org/W2126359798","https://openalex.org/W2128408632","https://openalex.org/W2132842501","https://openalex.org/W2140840007","https://openalex.org/W2143000571","https://openalex.org/W2147088528","https://openalex.org/W2147405597","https://openalex.org/W2148797284","https://openalex.org/W2152968740","https://openalex.org/W2169678694","https://openalex.org/W4211250195"],"related_works":["https://openalex.org/W2299249278","https://openalex.org/W2106885495","https://openalex.org/W2034875560","https://openalex.org/W3200586296","https://openalex.org/W2753646228","https://openalex.org/W1609157703","https://openalex.org/W3119730323","https://openalex.org/W4255372043","https://openalex.org/W4392312647","https://openalex.org/W4226296404"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,102,116,177,248],"monomeric":[2,28,53,142,192],"composition":[3],"of":[4,24,30,55,98,163,199,231,233,245],"polymers":[5,31,164,261],"is":[6,32,65,88,104,183],"powerful":[7],"for":[8,194,259],"structure":[9,23,29,54,77,97],"comparison":[10],"and":[11,50,148,165,202,215,241],"synthetic":[12],"biology,":[13],"among":[14],"others.":[15],"Many":[16],"databases":[17,162,214,232],"give":[18],"access":[19],"to":[20,47,120,207,216,236],"the":[21,27,43,52,75,85,96,99,124,136,152,167,212,219,228,238,243],"atomic":[22,76],"compounds":[25,235],"but":[26],"often":[33],"lacking.":[34],"We":[35,154],"have":[36],"designed":[37],"a":[38,56,107,112,128,132,140,145,172,257],"smart":[39],"algorithm,":[40],"implemented":[41],"in":[42,197,211],"tool":[44],"Smiles2Monomers":[45],"(s2m),":[46],"infer":[48],"efficiently":[49,196],"accurately":[51],"polymer":[57,182],"from":[58],"its":[59],"chemical":[60],"structure.":[61,143,153],"RESULTS:":[62],"Our":[63],"strategy":[64],"divided":[66],"into":[67,139,227],"two":[68,159],"steps:":[69],"first,":[70],"monomers":[71,93,126,138],"are":[72],"mapped":[73,137],"on":[74,106,127,158],"by":[78,111],"an":[79],"efficient":[80],"subgraph-isomorphism":[81],"algorithm":[82,134,150],";":[83],"second,":[84],"best":[86],"tiling":[87],"computed":[89],"so":[90],"that":[91],"non-overlapping":[92],"cover":[94],"all":[95,123],"target":[100,129],"polymer.":[101,130],"mapping":[103],"based":[105],"Markovian":[108],"index":[109,117],"built":[110],"dynamic":[113],"programming":[114],"algorithm.":[115],"enables":[118],"s2m":[119,187,204,223],"search":[121],"quickly":[122],"given":[125],"After,":[131],"greedy":[133],"combines":[135],"consistent":[141],"Finally,":[144],"local":[146],"branch":[147],"cut":[149],"refines":[151],"tested":[155,213],"this":[156],"method":[157,250],"manually":[160],"annotated":[161],"reconstructed":[166],"structures":[168],"de":[169,190],"novo":[170,191],"with":[171],"sensitivity":[173],"over":[174],"90":[175],"%.":[176],"average":[178],"computation":[179,201],"time":[180,200],"per":[181],"2":[184],"s.":[185],"CONCLUSION:":[186],"automatically":[188],"creates":[189],"annotations":[193],"polymers,":[195],"terms":[198],"sensitivity.":[203],"allowed":[205],"us":[206],"detect":[208],"annotation":[209,244],"errors":[210],"easily":[217],"find":[218],"accurate":[220],"structures.":[221],"So,":[222],"could":[224],"be":[225,252],"integrated":[226],"curation":[229],"process":[230],"small":[234],"verify":[237],"current":[239],"entries":[240],"accelerate":[242],"new":[246],"polymers.":[247],"full":[249],"can":[251],"downloaded":[253],"or":[254],"accessed":[255],"via":[256],"website":[258],"peptide-like":[260],"at":[262],"http://bioinfo.lifl.fr/norine/smiles2monomers.jsp.Graphical":[263],"abstract:.":[264]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":2},{"year":2015,"cited_by_count":1}],"updated_date":"2026-08-26T07:47:46.906454","created_date":"2025-10-10T00:00:00"}
