{"id":"https://openalex.org/W2183132306","doi":"https://doi.org/10.1186/s13321-015-0107-1","title":"High-quality and universal empirical atomic charges for chemoinformatics applications","display_name":"High-quality and universal empirical atomic charges for chemoinformatics applications","publication_year":2015,"publication_date":"2015-12-01","ids":{"openalex":"https://openalex.org/W2183132306","doi":"https://doi.org/10.1186/s13321-015-0107-1","mag":"2183132306","pmid":"https://pubmed.ncbi.nlm.nih.gov/26633997"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-015-0107-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-015-0107-1","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-015-0107-1","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-015-0107-1","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5031789769","display_name":"Stanislav Geidl","orcid":null},"institutions":[{"id":"https://openalex.org/I1310815967","display_name":"Central European Institute of Technology","ror":"https://ror.org/01p7k1986","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967"]},{"id":"https://openalex.org/I4210090417","display_name":"Central European Institute of Technology \u2013 Masaryk University","ror":"https://ror.org/009nz6031","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967","https://openalex.org/I21449261","https://openalex.org/I4210090417"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Stanislav Geidl","raw_affiliation_strings":["National Centre for Biomolecular Research, Faculty of Science and CEITEC, Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00 Brno, Czech Republic","National Centre for Biomolecular Research, Faculty of Science and CEITEC, Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00, Brno, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Centre for Biomolecular Research, Faculty of Science and CEITEC, Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00 Brno, Czech Republic","institution_ids":["https://openalex.org/I1310815967"]},{"raw_affiliation_string":"National Centre for Biomolecular Research, Faculty of Science and CEITEC, Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00, Brno, Czech Republic","institution_ids":["https://openalex.org/I1310815967","https://openalex.org/I4210090417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051927877","display_name":"Tom\u00e1\u0161 Bouchal","orcid":"https://orcid.org/0000-0003-1045-8763"},"institutions":[{"id":"https://openalex.org/I1310815967","display_name":"Central European Institute of Technology","ror":"https://ror.org/01p7k1986","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967"]},{"id":"https://openalex.org/I4210090417","display_name":"Central European Institute of Technology \u2013 Masaryk University","ror":"https://ror.org/009nz6031","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967","https://openalex.org/I21449261","https://openalex.org/I4210090417"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Tom\u00e1\u0161 Bouchal","raw_affiliation_strings":["National Centre for Biomolecular Research, Faculty of Science and CEITEC, Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00 Brno, Czech Republic","National Centre for Biomolecular Research, Faculty of Science and CEITEC, Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00, Brno, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Centre for Biomolecular Research, Faculty of Science and CEITEC, Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00 Brno, Czech Republic","institution_ids":["https://openalex.org/I1310815967"]},{"raw_affiliation_string":"National Centre for Biomolecular Research, Faculty of Science and CEITEC, Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00, Brno, Czech Republic","institution_ids":["https://openalex.org/I1310815967","https://openalex.org/I4210090417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040326443","display_name":"Tom\u00e1\u0161 Ra\u010dek","orcid":"https://orcid.org/0000-0002-0296-2452"},"institutions":[{"id":"https://openalex.org/I1310815967","display_name":"Central European Institute of Technology","ror":"https://ror.org/01p7k1986","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967"]},{"id":"https://openalex.org/I4210090417","display_name":"Central European Institute of Technology \u2013 Masaryk University","ror":"https://ror.org/009nz6031","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967","https://openalex.org/I21449261","https://openalex.org/I4210090417"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Tom\u00e1\u0161 Ra\u010dek","raw_affiliation_strings":["National Centre for Biomolecular Research, Faculty of Science and CEITEC, Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00 Brno, Czech Republic ; Faculty of Informatics, Masaryk University Brno, Botanick\u00e1 68a, 602 00 Brno, Czech Republic","National Centre for Biomolecular Research, Faculty of Science and CEITEC, Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00, Brno, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Centre for Biomolecular Research, Faculty of Science and CEITEC, Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00 Brno, Czech Republic ; Faculty of Informatics, Masaryk University Brno, Botanick\u00e1 68a, 602 00 Brno, Czech Republic","institution_ids":["https://openalex.org/I1310815967"]},{"raw_affiliation_string":"National Centre for Biomolecular Research, Faculty of Science and CEITEC, Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00, Brno, Czech Republic","institution_ids":["https://openalex.org/I1310815967","https://openalex.org/I4210090417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051424845","display_name":"Radka Svobodov\u00e1 Va\u0159ekov\u00e1","orcid":"https://orcid.org/0000-0002-3840-8760"},"institutions":[{"id":"https://openalex.org/I1310815967","display_name":"Central European Institute of Technology","ror":"https://ror.org/01p7k1986","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967"]},{"id":"https://openalex.org/I4210090417","display_name":"Central European Institute of Technology \u2013 Masaryk University","ror":"https://ror.org/009nz6031","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967","https://openalex.org/I21449261","https://openalex.org/I4210090417"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Radka Svobodov\u00e1 Va\u0159ekov\u00e1","raw_affiliation_strings":["National Centre for Biomolecular Research, Faculty of Science and CEITEC, Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00 Brno, Czech Republic","National Centre for Biomolecular Research, Faculty of Science and CEITEC, Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00, Brno, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Centre for Biomolecular Research, Faculty of Science and CEITEC, Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00 Brno, Czech Republic","institution_ids":["https://openalex.org/I1310815967"]},{"raw_affiliation_string":"National Centre for Biomolecular Research, Faculty of Science and CEITEC, Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00, Brno, Czech Republic","institution_ids":["https://openalex.org/I1310815967","https://openalex.org/I4210090417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047914435","display_name":"V\u00e1clav Hejret","orcid":null},"institutions":[{"id":"https://openalex.org/I1310815967","display_name":"Central European Institute of Technology","ror":"https://ror.org/01p7k1986","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967"]},{"id":"https://openalex.org/I4210090417","display_name":"Central European Institute of Technology \u2013 Masaryk University","ror":"https://ror.org/009nz6031","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967","https://openalex.org/I21449261","https://openalex.org/I4210090417"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"V\u00e1clav Hejret","raw_affiliation_strings":["National Centre for Biomolecular Research, Faculty of Science and CEITEC, Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00 Brno, Czech Republic","National Centre for Biomolecular Research, Faculty of Science and CEITEC, Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00, Brno, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Centre for Biomolecular Research, Faculty of Science and CEITEC, Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00 Brno, Czech Republic","institution_ids":["https://openalex.org/I1310815967"]},{"raw_affiliation_string":"National Centre for Biomolecular Research, Faculty of Science and CEITEC, Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00, Brno, Czech Republic","institution_ids":["https://openalex.org/I1310815967","https://openalex.org/I4210090417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008958321","display_name":"Ale\u0161 K\u0159enek","orcid":"https://orcid.org/0000-0002-3395-3196"},"institutions":[{"id":"https://openalex.org/I21449261","display_name":"Masaryk University","ror":"https://ror.org/02j46qs45","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21449261"]},{"id":"https://openalex.org/I4210155092","display_name":"Czech Academy of Sciences, Institute of Computer Science","ror":"https://ror.org/0496n6574","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210155092"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Ale\u0161 K\u0159enek","raw_affiliation_strings":["Institute of Computer Science, Masaryk University Brno, Botanick\u00e1 68a, 602 00 Brno, Czech Republic","Institute of Computer Science, Masaryk University Brno, Botanick\u00e1 68a, 602 00, Brno, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Computer Science, Masaryk University Brno, Botanick\u00e1 68a, 602 00 Brno, Czech Republic","institution_ids":["https://openalex.org/I21449261"]},{"raw_affiliation_string":"Institute of Computer Science, Masaryk University Brno, Botanick\u00e1 68a, 602 00, Brno, Czech Republic","institution_ids":["https://openalex.org/I21449261","https://openalex.org/I4210155092"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064101943","display_name":"Ruben Abagyan","orcid":"https://orcid.org/0000-0001-9309-2976"},"institutions":[{"id":"https://openalex.org/I6750721","display_name":"University of Montana","ror":"https://ror.org/0078xmk34","country_code":"US","type":"education","lineage":["https://openalex.org/I6750721"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ruben Abagyan","raw_affiliation_strings":["Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, 9500 Gilman Drive, San Diego, MC 0657 USA","Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, 9500 Gilman Drive, San Diego, MC, 0657, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, 9500 Gilman Drive, San Diego, MC 0657 USA","institution_ids":["https://openalex.org/I6750721"]},{"raw_affiliation_string":"Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, 9500 Gilman Drive, San Diego, MC, 0657, USA","institution_ids":["https://openalex.org/I6750721"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5061853775","display_name":"Jaroslav Ko\u010da","orcid":"https://orcid.org/0000-0002-2780-4901"},"institutions":[{"id":"https://openalex.org/I1310815967","display_name":"Central European Institute of Technology","ror":"https://ror.org/01p7k1986","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967"]},{"id":"https://openalex.org/I4210090417","display_name":"Central European Institute of Technology \u2013 Masaryk University","ror":"https://ror.org/009nz6031","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967","https://openalex.org/I21449261","https://openalex.org/I4210090417"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Jaroslav Ko\u010da","raw_affiliation_strings":["National Centre for Biomolecular Research, Faculty of Science and CEITEC, Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00 Brno, Czech Republic","National Centre for Biomolecular Research, Faculty of Science and CEITEC, Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00, Brno, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Centre for Biomolecular Research, Faculty of Science and CEITEC, Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00 Brno, Czech Republic","institution_ids":["https://openalex.org/I1310815967"]},{"raw_affiliation_string":"National Centre for Biomolecular Research, Faculty of Science and CEITEC, Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00, Brno, Czech Republic","institution_ids":["https://openalex.org/I1310815967","https://openalex.org/I4210090417"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":2390,"currency":"USD","value_usd":2390},"apc_paid":{"value":2390,"currency":"USD","value_usd":2390},"fwci":1.6819,"has_fulltext":true,"cited_by_count":52,"citation_normalized_percentile":{"value":0.85529873,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"7","issue":"1","first_page":"59","last_page":"59"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.7919999957084656,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.7919999957084656,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.06710000336170197,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10798","display_name":"Crystallography and molecular interactions","score":0.05000000074505806,"subfield":{"id":"https://openalex.org/subfields/1606","display_name":"Physical and Theoretical Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pubchem","display_name":"PubChem","score":0.9153980016708374},{"id":"https://openalex.org/keywords/drugbank","display_name":"DrugBank","score":0.8296687602996826},{"id":"https://openalex.org/keywords/cheminformatics","display_name":"Cheminformatics","score":0.7920781373977661},{"id":"https://openalex.org/keywords/chembl","display_name":"chEMBL","score":0.6616660952568054},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5537275075912476},{"id":"https://openalex.org/keywords/pharmacophore","display_name":"Pharmacophore","score":0.5453949570655823},{"id":"https://openalex.org/keywords/precomputation","display_name":"Precomputation","score":0.5294308662414551},{"id":"https://openalex.org/keywords/chemical-space","display_name":"Chemical space","score":0.5282791256904602},{"id":"https://openalex.org/keywords/computational-chemistry","display_name":"Computational chemistry","score":0.49381718039512634},{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.492468923330307},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.48679229617118835},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4330666661262512},{"id":"https://openalex.org/keywords/partial-charge","display_name":"Partial charge","score":0.42866218090057373},{"id":"https://openalex.org/keywords/molecule","display_name":"Molecule","score":0.406377375125885},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.30943095684051514},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.26500964164733887},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.25315678119659424},{"id":"https://openalex.org/keywords/stereochemistry","display_name":"Stereochemistry","score":0.13096138834953308}],"concepts":[{"id":"https://openalex.org/C158180186","wikidata":"https://www.wikidata.org/wiki/Q278487","display_name":"PubChem","level":2,"score":0.9153980016708374},{"id":"https://openalex.org/C155261790","wikidata":"https://www.wikidata.org/wiki/Q1122544","display_name":"DrugBank","level":3,"score":0.8296687602996826},{"id":"https://openalex.org/C68762167","wikidata":"https://www.wikidata.org/wiki/Q910164","display_name":"Cheminformatics","level":2,"score":0.7920781373977661},{"id":"https://openalex.org/C63222358","wikidata":"https://www.wikidata.org/wiki/Q6120337","display_name":"chEMBL","level":3,"score":0.6616660952568054},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5537275075912476},{"id":"https://openalex.org/C56173144","wikidata":"https://www.wikidata.org/wiki/Q1539893","display_name":"Pharmacophore","level":2,"score":0.5453949570655823},{"id":"https://openalex.org/C159379195","wikidata":"https://www.wikidata.org/wiki/Q7239568","display_name":"Precomputation","level":3,"score":0.5294308662414551},{"id":"https://openalex.org/C99726746","wikidata":"https://www.wikidata.org/wiki/Q906396","display_name":"Chemical space","level":3,"score":0.5282791256904602},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.49381718039512634},{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.492468923330307},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.48679229617118835},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4330666661262512},{"id":"https://openalex.org/C12892243","wikidata":"https://www.wikidata.org/wiki/Q901147","display_name":"Partial charge","level":3,"score":0.42866218090057373},{"id":"https://openalex.org/C32909587","wikidata":"https://www.wikidata.org/wiki/Q11369","display_name":"Molecule","level":2,"score":0.406377375125885},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.30943095684051514},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.26500964164733887},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.25315678119659424},{"id":"https://openalex.org/C71240020","wikidata":"https://www.wikidata.org/wiki/Q186011","display_name":"Stereochemistry","level":1,"score":0.13096138834953308},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C118552586","wikidata":"https://www.wikidata.org/wiki/Q7867","display_name":"Psychiatry","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1186/s13321-015-0107-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-015-0107-1","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-015-0107-1","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:4667495","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4667495","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"J Cheminform","raw_type":"Text"},{"id":"pmid:26633997","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26633997","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":"Journal Article"},{"id":"pmh:ark:/13030/qt5f2145rr","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:escholarship.org/ark:/13030/qt5f2145rr","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/5f2145rr","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of cheminformatics, vol 7, iss 1","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s13321-015-0107-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-015-0107-1","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-015-0107-1","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1766531844","display_name":null,"funder_award_id":"U54GM094618","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G1849335853","display_name":null,"funder_award_id":"CZ.1.05/1.100/02.0068","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G2500561065","display_name":null,"funder_award_id":"CZ.1.07/2.3.00/20.0042","funder_id":"https://openalex.org/F4320338080","funder_display_name":"European Social Fund"},{"id":"https://openalex.org/G250925262","display_name":null,"funder_award_id":"R01GM071872","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G2633659260","display_name":null,"funder_award_id":"CZ.1.05/1.1.00/02.0068","funder_id":"https://openalex.org/F4320334960","funder_display_name":"Seventh Framework Programme"},{"id":"https://openalex.org/G2860024189","display_name":"Study of proteins from pathogens involved in host organism recognition","funder_award_id":"GA13-25401S","funder_id":"https://openalex.org/F4320321006","funder_display_name":"Grantov\u00e1 Agentura \u010cesk\u00e9 Republiky"},{"id":"https://openalex.org/G2907418289","display_name":null,"funder_award_id":"CZ.1.07/2.3.00/30.0009","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G2994928957","display_name":null,"funder_award_id":"U01 GM 094612","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G3526557376","display_name":"Structure, Dynamics and Activation Mechanisms of Chemokine Receptors","funder_award_id":"5u01gm094612-03","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3910799536","display_name":null,"funder_award_id":"CZ.1.05/1.1.00/02.0068","funder_id":"https://openalex.org/F4320338080","funder_display_name":"European Social Fund"},{"id":"https://openalex.org/G5149465408","display_name":null,"funder_award_id":"CZ.1.05/1.1.00/02.0068","funder_id":"https://openalex.org/F4320321006","funder_display_name":"Grantov\u00e1 Agentura \u010cesk\u00e9 Republiky"},{"id":"https://openalex.org/G5553602548","display_name":null,"funder_award_id":"CZ.1.07/2.3.00/30.0009","funder_id":"https://openalex.org/F4320321006","funder_display_name":"Grantov\u00e1 Agentura \u010cesk\u00e9 Republiky"},{"id":"https://openalex.org/G5993825863","display_name":"Flexible Macromolecular Docking","funder_award_id":"5r01gm071872-13","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6461011143","display_name":null,"funder_award_id":"CZ.1.07","funder_id":"https://openalex.org/F4320338080","funder_display_name":"European Social Fund"},{"id":"https://openalex.org/G7026519940","display_name":"GPCR Network","funder_award_id":"7u54gm094618-06","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7205854389","display_name":null,"funder_award_id":"CZ.1.07/2.3.00/30.0009","funder_id":"https://openalex.org/F4320338080","funder_display_name":"European Social Fund"},{"id":"https://openalex.org/G8755899154","display_name":null,"funder_award_id":"1.05/1.1.00/02.0068","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"}],"funders":[{"id":"https://openalex.org/F4320321006","display_name":"Grantov\u00e1 Agentura \u010cesk\u00e9 Republiky","ror":"https://ror.org/01pv73b02"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320334960","display_name":"Seventh Framework Programme","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320338080","display_name":"European Social Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2183132306.pdf","grobid_xml":"https://content.openalex.org/works/W2183132306.grobid-xml"},"referenced_works_count":76,"referenced_works":["https://openalex.org/W370776269","https://openalex.org/W1522872937","https://openalex.org/W1545231783","https://openalex.org/W1546015235","https://openalex.org/W1552874028","https://openalex.org/W1576994318","https://openalex.org/W1601495365","https://openalex.org/W1650728208","https://openalex.org/W1797123421","https://openalex.org/W1966220565","https://openalex.org/W1968392598","https://openalex.org/W1969948047","https://openalex.org/W1971458166","https://openalex.org/W1975875968","https://openalex.org/W1983635605","https://openalex.org/W1984845825","https://openalex.org/W1987446850","https://openalex.org/W1988502210","https://openalex.org/W1993362003","https://openalex.org/W1993383767","https://openalex.org/W1993492933","https://openalex.org/W1997401744","https://openalex.org/W1998189465","https://openalex.org/W2002261888","https://openalex.org/W2008175766","https://openalex.org/W2008517160","https://openalex.org/W2009313526","https://openalex.org/W2010911777","https://openalex.org/W2011215428","https://openalex.org/W2011810806","https://openalex.org/W2012971796","https://openalex.org/W2018518196","https://openalex.org/W2026910177","https://openalex.org/W2027482274","https://openalex.org/W2033293438","https://openalex.org/W2035221724","https://openalex.org/W2040459007","https://openalex.org/W2040496005","https://openalex.org/W2047509756","https://openalex.org/W2048593871","https://openalex.org/W2049635857","https://openalex.org/W2049643865","https://openalex.org/W2051469879","https://openalex.org/W2051622977","https://openalex.org/W2063298529","https://openalex.org/W2071955309","https://openalex.org/W2072537419","https://openalex.org/W2074429159","https://openalex.org/W2077236856","https://openalex.org/W2078750399","https://openalex.org/W2079391392","https://openalex.org/W2085966856","https://openalex.org/W2088666833","https://openalex.org/W2089188080","https://openalex.org/W2097475255","https://openalex.org/W2102537419","https://openalex.org/W2105564187","https://openalex.org/W2107029002","https://openalex.org/W2112803111","https://openalex.org/W2114725812","https://openalex.org/W2127119957","https://openalex.org/W2140291772","https://openalex.org/W2142948202","https://openalex.org/W2149464039","https://openalex.org/W2151334055","https://openalex.org/W2153996958","https://openalex.org/W2160562679","https://openalex.org/W2163245246","https://openalex.org/W2163646378","https://openalex.org/W2169678694","https://openalex.org/W2170006871","https://openalex.org/W2171009415","https://openalex.org/W2494768458","https://openalex.org/W2539015190","https://openalex.org/W2613154672","https://openalex.org/W4233998925"],"related_works":["https://openalex.org/W4249248884","https://openalex.org/W2029912875","https://openalex.org/W2887866551","https://openalex.org/W3207789654","https://openalex.org/W1966613725","https://openalex.org/W2170146596","https://openalex.org/W3118783399","https://openalex.org/W2499536725","https://openalex.org/W2775897225","https://openalex.org/W2183132306"],"abstract_inverted_index":{"BACKGROUND:":[0],"Partial":[1],"atomic":[2,226],"charges":[3,25,50,121,130,227],"describe":[4],"the":[5,18,62,116,133,201,220,247],"distribution":[6],"of":[7,21,183,200,223,250],"electron":[8],"density":[9],"in":[10,29,40,122,185,252],"a":[11,123,145,160,169,237],"molecule":[12],"and":[13,58,85,142,144,166,192],"therefore":[14],"provide":[15,236],"clues":[16],"to":[17,118,126,195],"chemical":[19],"behaviour":[20],"molecules.":[22,232],"Recently,":[23],"these":[24,204],"have":[26,108],"become":[27],"popular":[28],"chemoinformatics,":[30],"as":[31],"they":[32,86],"are":[33,176,212],"informative":[34],"descriptors":[35],"that":[36],"can":[37],"be":[38],"utilised":[39],"pharmacophore":[41],"design,":[42],"virtual":[43],"screening,":[44],"similarity":[45],"searches":[46],"etc.":[47,97],"Especially":[48],"conformationally-dependent":[49],"perform":[51],"very":[52,68,156],"successfully.":[53],"In":[54,233],"particular,":[55],"their":[56,99,241],"fast":[57,221],"accurate":[59],"calculation":[60,137,222],"via":[61],"Electronegativity":[63],"Equalization":[64],"Method":[65],"(EEM)":[66],"seems":[67],"promising":[69],"for":[70,81,90,101,178,206,228,240],"chemoinformatics":[71],"applications.":[72],"Unfortunately,":[73],"published":[74],"EEM":[75,111,120,153,210,217,251],"parameter":[76,112],"sets":[77,113],"include":[78],"only":[79],"parameters":[80,89,154,211,218],"basic":[82],"atom":[83],"types":[84],"often":[87],"miss":[88],"halogens,":[91],"phosphorus,":[92],"sulphur,":[93],"triple":[94],"bonded":[95],"carbon":[96],"Therefore":[98],"applicability":[100],"drug-like":[102,231],"molecules":[103,184,202],"is":[104],"limited.":[105],"RESULTS:":[106],"We":[107,215],"prepared":[109],"six":[110],"which":[114,207],"enable":[115],"user":[117],"calculate":[119],"quality":[124,158],"comparable":[125],"quantum":[127],"mechanics":[128],"(QM)":[129],"based":[131],"on":[132,159,168],"most":[134],"common":[135],"charge":[136],"schemes":[138],"(i.e.,":[139],"MPA,":[140],"NPA":[141],"AIM)":[143],"robust":[146],"QM":[147],"approach":[148],"(HF/6-311G,":[149],"B3LYP/6-311G).":[150],"The":[151],"calculated":[152],"exhibited":[155],"good":[157],"training":[161],"set":[162,171],"([Formula:":[163,172],"see":[164,173],"text])":[165],"also":[167],"test":[170],"text]).":[174],"They":[175],"applicable":[177],"at":[179],"least":[180],"95":[181],"%":[182,199],"key":[186],"drug":[187],"databases":[188,205],"(DrugBank,":[189],"ChEMBL,":[190],"Pubchem":[191],"ZINC)":[193],"compared":[194],"less":[196],"than":[197],"60":[198],"from":[203],"currently":[208],"used":[209],"applicable.":[213],"CONCLUSIONS:":[214],"developed":[216],"enabling":[219],"high-quality":[224],"partial":[225],"almost":[229],"all":[230],"parallel,":[234],"we":[235],"software":[238],"solution":[239],"easy":[242],"computation":[243],"(http://ncbr.muni.cz/eem_parameters).":[244],"It":[245],"enables":[246],"direct":[248],"application":[249],"chemoinformatics.":[253]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":11},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":2},{"year":2016,"cited_by_count":3}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
