{"id":"https://openalex.org/W2113025130","doi":"https://doi.org/10.1186/s13321-015-0090-6","title":"Synergy Maps: exploring compound combinations using network-based visualization","display_name":"Synergy Maps: exploring compound combinations using network-based visualization","publication_year":2015,"publication_date":"2015-07-31","ids":{"openalex":"https://openalex.org/W2113025130","doi":"https://doi.org/10.1186/s13321-015-0090-6","mag":"2113025130","pmid":"https://pubmed.ncbi.nlm.nih.gov/26236402"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-015-0090-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-015-0090-6","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-015-0090-6","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-015-0090-6","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5080650388","display_name":"Richard P. Lewis","orcid":"https://orcid.org/0000-0001-6642-5771"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Richard Lewis","raw_affiliation_strings":["Department of Chemistry, Centre for Molecular Informatics, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW UK","Department of Chemistry, Centre for Molecular Informatics, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, UK"],"raw_orcid":"https://orcid.org/0000-0001-6642-5771","affiliations":[{"raw_affiliation_string":"Department of Chemistry, Centre for Molecular Informatics, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW UK","institution_ids":["https://openalex.org/I241749"]},{"raw_affiliation_string":"Department of Chemistry, Centre for Molecular Informatics, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, UK","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069062997","display_name":"Rajarshi Guha","orcid":"https://orcid.org/0000-0001-7403-8819"},"institutions":[{"id":"https://openalex.org/I4210148682","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210148682"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rajarshi Guha","raw_affiliation_strings":["National Center for Advancing Translational Sciences, 9800 Medical Center Drive, Rockville, MD 20850 USA","National Center for Advancing Translational Sciences, 9800 Medical Center Drive, Rockville, MD, 20850, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Advancing Translational Sciences, 9800 Medical Center Drive, Rockville, MD 20850 USA","institution_ids":["https://openalex.org/I4210148682"]},{"raw_affiliation_string":"National Center for Advancing Translational Sciences, 9800 Medical Center Drive, Rockville, MD, 20850, USA","institution_ids":["https://openalex.org/I4210148682"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011513198","display_name":"Tam\u00e1s Korcsm\u00e1ros","orcid":"https://orcid.org/0000-0003-1717-996X"},"institutions":[{"id":"https://openalex.org/I2799300731","display_name":"Norwich Research Park","ror":"https://ror.org/0062dz060","country_code":"GB","type":"archive","lineage":["https://openalex.org/I2799300731"]},{"id":"https://openalex.org/I3018370718","display_name":"Quadram Institute","ror":"https://ror.org/04td3ys19","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2799693246","https://openalex.org/I3018370718","https://openalex.org/I4210087105"]},{"id":"https://openalex.org/I4210100714","display_name":"Earlham Institute","ror":"https://ror.org/018cxtf62","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2799693246","https://openalex.org/I4210087105","https://openalex.org/I4210100714"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Tam\u00e1s Korcsmaros","raw_affiliation_strings":["TGAC, The Genome Analysis Centre, Norwich Research Park, Norwich, UK ; Gut Health and Food Safety Programme, Institute of Food Research, Norwich Research Park, Norwich, UK","Gut Health and Food Safety Programme, Institute of Food Research, Norwich Research Park, Norwich, UK","TGAC, The Genome Analysis Centre, Norwich Research Park, Norwich, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"TGAC, The Genome Analysis Centre, Norwich Research Park, Norwich, UK ; Gut Health and Food Safety Programme, Institute of Food Research, Norwich Research Park, Norwich, UK","institution_ids":["https://openalex.org/I2799300731"]},{"raw_affiliation_string":"Gut Health and Food Safety Programme, Institute of Food Research, Norwich Research Park, Norwich, UK","institution_ids":["https://openalex.org/I2799300731","https://openalex.org/I3018370718"]},{"raw_affiliation_string":"TGAC, The Genome Analysis Centre, Norwich Research Park, Norwich, UK","institution_ids":["https://openalex.org/I2799300731","https://openalex.org/I4210100714"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5026643759","display_name":"Andreas Bender","orcid":"https://orcid.org/0000-0002-6683-7546"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Andreas Bender","raw_affiliation_strings":["Department of Chemistry, Centre for Molecular Informatics, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW UK","Department of Chemistry, Centre for Molecular Informatics, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry, Centre for Molecular Informatics, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW UK","institution_ids":["https://openalex.org/I241749"]},{"raw_affiliation_string":"Department of Chemistry, Centre for Molecular Informatics, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, UK","institution_ids":["https://openalex.org/I241749"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5026643759"],"corresponding_institution_ids":["https://openalex.org/I241749"],"apc_list":{"value":2390,"currency":"USD","value_usd":2390},"apc_paid":{"value":2390,"currency":"USD","value_usd":2390},"fwci":5.7165,"has_fulltext":true,"cited_by_count":40,"citation_normalized_percentile":{"value":0.96515878,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"7","issue":"1","first_page":"36","last_page":"36"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.5776000022888184,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.5776000022888184,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11736","display_name":"Histone Deacetylase Inhibitors Research","score":0.06069999933242798,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13180","display_name":"Chemistry and Chemical Engineering","score":0.03480000048875809,"subfield":{"id":"https://openalex.org/subfields/2304","display_name":"Environmental Chemistry"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6898728609085083},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6428159475326538},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.48309043049812317},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.44697698950767517},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.32653123140335083}],"concepts":[{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6898728609085083},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6428159475326538},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.48309043049812317},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.44697698950767517},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.32653123140335083}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1186/s13321-015-0090-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-015-0090-6","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-015-0090-6","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:26236402","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26236402","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:4521339","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4521339","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Cheminform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13321-015-0090-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-015-0090-6","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-015-0090-6","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4366383074","display_name":"Gut Systems Biology, connecting microbes and host processes","funder_award_id":"BBS/E/F/00044500","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G4739996220","display_name":"TGAC ISPG - Developing Strategies for Big Data Bioinformatics","funder_award_id":"BBS/E/T/000PR5885","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G5413484791","display_name":null,"funder_award_id":"BBS/E/T/000PR5885","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G5693107050","display_name":"TGAC NCG: National Genomics Facility","funder_award_id":"BBS/E/T/000PR6193","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G6123500221","display_name":null,"funder_award_id":"BBS/E/T/000PR6193","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G7775138694","display_name":null,"funder_award_id":"BBS/E/F/00044500","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G8907075544","display_name":null,"funder_award_id":"1374343","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"},{"id":"https://openalex.org/F4320334678","display_name":"European Research Council","ror":"https://ror.org/0472cxd90"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2113025130.pdf","grobid_xml":"https://content.openalex.org/works/W2113025130.grobid-xml"},"referenced_works_count":48,"referenced_works":["https://openalex.org/W45418453","https://openalex.org/W1435191252","https://openalex.org/W1629958208","https://openalex.org/W1915767302","https://openalex.org/W1975728616","https://openalex.org/W1977785806","https://openalex.org/W1982301941","https://openalex.org/W1983265239","https://openalex.org/W2000642204","https://openalex.org/W2002544582","https://openalex.org/W2006656322","https://openalex.org/W2009313526","https://openalex.org/W2011301426","https://openalex.org/W2015789827","https://openalex.org/W2027694152","https://openalex.org/W2031932867","https://openalex.org/W2036291018","https://openalex.org/W2044025814","https://openalex.org/W2044834685","https://openalex.org/W2054768549","https://openalex.org/W2059301290","https://openalex.org/W2060737851","https://openalex.org/W2061136308","https://openalex.org/W2079012552","https://openalex.org/W2089559915","https://openalex.org/W2096541451","https://openalex.org/W2101234009","https://openalex.org/W2115076532","https://openalex.org/W2116877707","https://openalex.org/W2137052779","https://openalex.org/W2137316294","https://openalex.org/W2140595402","https://openalex.org/W2145877930","https://openalex.org/W2146928413","https://openalex.org/W2148841924","https://openalex.org/W2155626151","https://openalex.org/W2159675211","https://openalex.org/W2159887157","https://openalex.org/W2165863045","https://openalex.org/W2167482691","https://openalex.org/W2187089797","https://openalex.org/W2196714401","https://openalex.org/W2217028767","https://openalex.org/W2223501982","https://openalex.org/W2294798173","https://openalex.org/W2319794630","https://openalex.org/W2335490758","https://openalex.org/W4407751074"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2068608913","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,240],"phenomenon":[2],"of":[3,5,26,35,43,101,182,201,224,246,252],"super-additivity":[4],"biological":[6],"response":[7],"to":[8,17,116,177],"compounds":[9,102],"applied":[10,176],"jointly,":[11],"termed":[12,87],"synergy,":[13],"has":[14,29,155],"the":[15,41,71,75,98,124,141,145,198,222,225],"potential":[16],"provide":[18],"many":[19],"therapeutic":[20],"benefits.":[21],"Therefore,":[22],"high":[23],"throughput":[24],"screening":[25,45,85],"compound":[27,38,127,228,235,255],"combinations":[28],"recently":[30],"received":[31],"a":[32,60,63,93,118,122,178,189],"great":[33],"deal":[34],"attention.":[36],"Large":[37],"libraries":[39],"and":[40,128,135,167,188,237,249,257],"feasibility":[42],"all-pairs":[44,180],"can":[46],"easily":[47],"generate":[48],"large,":[49],"information-rich":[50],"datasets.":[51,172],"Previously,":[52],"these":[53,66],"datasets":[54],"have":[55],"been":[56,156],"visualized":[57],"using":[58],"either":[59],"heat-map":[61],"or":[62],"network":[64],"approach-however":[65],"visualizations":[67],"only":[68],"partially":[69],"represent":[70],"information":[72,96,106],"encoded":[73],"in":[74,144,165,207,227],"dataset.":[76],"RESULTS:":[77],"A":[78],"new":[79,213],"visualization":[80],"technique":[81],"for":[82,158,215],"pairwise":[83],"combination":[84,129,171,229,247],"data,":[86,248],"\"Synergy":[88],"Maps\",":[89],"is":[90,103,175,192],"presented.":[91],"In":[92],"Synergy":[94,219],"Map,":[95],"about":[97,107],"synergistic":[99],"interactions":[100],"integrated":[104],"with":[105],"their":[108,238],"properties":[109,130,236,256],"(chemical":[110],"structure,":[111],"physicochemical":[112],"properties,":[113],"bioactivity":[114],"profiles)":[115],"produce":[117],"single":[119],"visualization.":[120],"As":[121],"result":[123],"relationships":[125],"between":[126,254],"may":[131,137,162],"be":[132],"investigated":[133],"simultaneously,":[134],"thus":[136],"afford":[138],"insight":[139],"into":[140],"synergy":[142],"observed":[143],"screen.":[146],"An":[147],"interactive":[148],"web":[149],"app":[150],"implementation,":[151],"available":[152],"at":[153],"http://richlewis42.github.io/synergy-maps,":[154],"developed":[157],"public":[159],"use,":[160],"which":[161],"find":[163],"use":[164],"navigating":[166],"filtering":[168],"larger":[169],"scale":[170],"This":[173],"tool":[174,242],"recent":[179],"dataset":[181],"anti-malarials,":[183],"tested":[184],"against":[185],"Plasmodium":[186],"falciparum,":[187],"preliminary":[190],"analysis":[191],"given":[193],"as":[194,209,211],"an":[195],"example,":[196],"illustrating":[197],"disproportionate":[199],"synergism":[200],"histone":[202],"deacetylase":[203],"inhibitors":[204],"previously":[205],"described":[206],"literature,":[208],"well":[210],"suggesting":[212],"hypotheses":[214],"future":[216],"investigation.":[217],"CONCLUSIONS:":[218],"Maps":[220],"improve":[221],"state":[223],"art":[226],"visualization,":[230],"by":[231],"simultaneously":[232],"representing":[233],"individual":[234],"interactions.":[239,258],"web-based":[241],"allows":[243],"straightforward":[244],"exploration":[245],"easier":[250],"identification":[251],"correlations":[253]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":7},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":6}],"updated_date":"2026-08-22T07:34:49.880490","created_date":"2025-10-10T00:00:00"}
