{"id":"https://openalex.org/W1552509723","doi":"https://doi.org/10.1186/s13321-015-0082-6","title":"QSAR DataBank repository: open and linked qualitative and quantitative structure\u2013activity relationship models","display_name":"QSAR DataBank repository: open and linked qualitative and quantitative structure\u2013activity relationship models","publication_year":2015,"publication_date":"2015-06-24","ids":{"openalex":"https://openalex.org/W1552509723","doi":"https://doi.org/10.1186/s13321-015-0082-6","mag":"1552509723","pmid":"https://pubmed.ncbi.nlm.nih.gov/26110025"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-015-0082-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-015-0082-6","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-015-0082-6","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-015-0082-6","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014361467","display_name":"Villu Ruusmann","orcid":null},"institutions":[{"id":"https://openalex.org/I56085075","display_name":"University of Tartu","ror":"https://ror.org/03z77qz90","country_code":"EE","type":"education","lineage":["https://openalex.org/I56085075"]}],"countries":["EE"],"is_corresponding":false,"raw_author_name":"V Ruusmann","raw_affiliation_strings":["Institute of Chemistry, University of Tartu, Ravila 14a, 50411 Tartu, Estonia","Institute of Chemistry, University of Tartu, Ravila 14a, 50411, Tartu, Estonia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Chemistry, University of Tartu, Ravila 14a, 50411 Tartu, Estonia","institution_ids":["https://openalex.org/I56085075"]},{"raw_affiliation_string":"Institute of Chemistry, University of Tartu, Ravila 14a, 50411, Tartu, Estonia","institution_ids":["https://openalex.org/I56085075"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024057261","display_name":"Sulev Sild","orcid":"https://orcid.org/0000-0002-8189-4370"},"institutions":[{"id":"https://openalex.org/I56085075","display_name":"University of Tartu","ror":"https://ror.org/03z77qz90","country_code":"EE","type":"education","lineage":["https://openalex.org/I56085075"]}],"countries":["EE"],"is_corresponding":false,"raw_author_name":"S Sild","raw_affiliation_strings":["Institute of Chemistry, University of Tartu, Ravila 14a, 50411 Tartu, Estonia","Institute of Chemistry, University of Tartu, Ravila 14a, 50411, Tartu, Estonia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Chemistry, University of Tartu, Ravila 14a, 50411 Tartu, Estonia","institution_ids":["https://openalex.org/I56085075"]},{"raw_affiliation_string":"Institute of Chemistry, University of Tartu, Ravila 14a, 50411, Tartu, Estonia","institution_ids":["https://openalex.org/I56085075"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5051041102","display_name":"Uko Maran","orcid":"https://orcid.org/0000-0003-2506-0934"},"institutions":[{"id":"https://openalex.org/I56085075","display_name":"University of Tartu","ror":"https://ror.org/03z77qz90","country_code":"EE","type":"education","lineage":["https://openalex.org/I56085075"]}],"countries":["EE"],"is_corresponding":true,"raw_author_name":"U Maran","raw_affiliation_strings":["Institute of Chemistry, University of Tartu, Ravila 14a, 50411 Tartu, Estonia","Institute of Chemistry, University of Tartu, Ravila 14a, 50411, Tartu, Estonia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Chemistry, University of Tartu, Ravila 14a, 50411 Tartu, Estonia","institution_ids":["https://openalex.org/I56085075"]},{"raw_affiliation_string":"Institute of Chemistry, University of Tartu, Ravila 14a, 50411, Tartu, Estonia","institution_ids":["https://openalex.org/I56085075"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5051041102"],"corresponding_institution_ids":["https://openalex.org/I56085075"],"apc_list":{"value":2190,"currency":"USD","value_usd":2190},"apc_paid":{"value":2190,"currency":"USD","value_usd":2190},"fwci":6.0248,"has_fulltext":true,"cited_by_count":86,"citation_normalized_percentile":{"value":0.96654761,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"7","issue":"1","first_page":"32","last_page":"32"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.7712000012397766,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.7712000012397766,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.051500000059604645,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.03849999979138374,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7819886803627014},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.71497642993927},{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.6767379641532898},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.6761767268180847},{"id":"https://openalex.org/keywords/usable","display_name":"USable","score":0.67473965883255},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5667413473129272},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.4790162444114685},{"id":"https://openalex.org/keywords/biomedicine","display_name":"Biomedicine","score":0.47561484575271606},{"id":"https://openalex.org/keywords/information-repository","display_name":"Information repository","score":0.4636133313179016},{"id":"https://openalex.org/keywords/data-curation","display_name":"Data curation","score":0.46037939190864563},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.41070806980133057},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3780015707015991},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.33111321926116943},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3093954920768738},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.21080851554870605},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.181622713804245},{"id":"https://openalex.org/keywords/computer-data-storage","display_name":"Computer data storage","score":0.11014825105667114}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7819886803627014},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.71497642993927},{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.6767379641532898},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.6761767268180847},{"id":"https://openalex.org/C2780615836","wikidata":"https://www.wikidata.org/wiki/Q2471869","display_name":"USable","level":2,"score":0.67473965883255},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5667413473129272},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.4790162444114685},{"id":"https://openalex.org/C66782513","wikidata":"https://www.wikidata.org/wiki/Q864601","display_name":"Biomedicine","level":2,"score":0.47561484575271606},{"id":"https://openalex.org/C3102742","wikidata":"https://www.wikidata.org/wiki/Q6031177","display_name":"Information repository","level":3,"score":0.4636133313179016},{"id":"https://openalex.org/C91632574","wikidata":"https://www.wikidata.org/wiki/Q15088675","display_name":"Data curation","level":2,"score":0.46037939190864563},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.41070806980133057},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3780015707015991},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.33111321926116943},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3093954920768738},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.21080851554870605},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.181622713804245},{"id":"https://openalex.org/C194739806","wikidata":"https://www.wikidata.org/wiki/Q66221","display_name":"Computer data storage","level":2,"score":0.11014825105667114},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1186/s13321-015-0082-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-015-0082-6","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-015-0082-6","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:26110025","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26110025","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:4479250","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4479250","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Cheminform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13321-015-0082-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-015-0082-6","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-015-0082-6","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6501426040","display_name":null,"funder_award_id":"SF0140031Bs09","funder_id":"https://openalex.org/F4320321018","funder_display_name":"Eesti Teadusfondi"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320321018","display_name":"Eesti Teadusfondi","ror":"https://ror.org/00jjeja18"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":15,"referenced_works":["https://openalex.org/W1964922707","https://openalex.org/W1989936786","https://openalex.org/W1990399577","https://openalex.org/W2022878293","https://openalex.org/W2024088210","https://openalex.org/W2061800084","https://openalex.org/W2064748397","https://openalex.org/W2084087750","https://openalex.org/W2116976305","https://openalex.org/W2132120579","https://openalex.org/W2133857659","https://openalex.org/W2148797284","https://openalex.org/W2245105528","https://openalex.org/W2569373723","https://openalex.org/W4236230159"],"related_works":["https://openalex.org/W2017899917","https://openalex.org/W2080571363","https://openalex.org/W2481322495","https://openalex.org/W2982321410","https://openalex.org/W2152243665","https://openalex.org/W4238975963","https://openalex.org/W3170425103","https://openalex.org/W2591965433","https://openalex.org/W2946690138","https://openalex.org/W2467372616"],"abstract_inverted_index":{"BACKGROUND:":[0],"Structure-activity":[1],"relationship":[2],"models":[3,54,83,124,147,173,205,229],"have":[4,25],"been":[5,26],"used":[6],"to":[7,59,107,239,300],"gain":[8],"insight":[9],"into":[10,150,154],"chemical":[11],"and":[12,37,62,81,86,96,111,120,132,152,171,186,188,200,209,217,241,247,275,293],"physical":[13],"processes":[14,110],"in":[15,31,64,77,88,114,127,134,202,230],"biomedicine,":[16],"toxicology,":[17],"biotechnology,":[18],"etc.":[19],"for":[20,35,92,169],"almost":[21],"a":[22,65,72,89,135],"century.":[23],"They":[24],"recognized":[27],"as":[28,183],"valuable":[29],"tools":[30],"decision":[32],"support":[33],"workflows":[34],"qualitative":[36],"quantitative":[38,47],"predictions.":[39],"The":[40,101,192,220],"main":[41],"obstacle":[42],"preventing":[43],"broader":[44],"adoption":[45],"of":[46,113,198,212,227,286],"structure-activity":[48],"relationships":[49],"[(Q)SARs]":[50],"is":[51,164,224,273],"that":[52,75,272],"published":[53],"are":[55,125,148],"still":[56],"relatively":[57],"difficult":[58],"discover,":[60],"retrieve":[61],"redeploy":[63],"modern":[66],"computer-oriented":[67],"environment.":[68],"This":[69],"publication":[70],"describes":[71],"digital":[73],"repository":[74,105,137,163,194,283],"makes":[76,236],"silico":[78,115,203],"(Q)SAR-type":[79,204],"descriptive":[80,199],"predictive":[82,201],"archivable,":[84],"citable":[85],"usable":[87],"novel":[90],"way":[91],"most":[93,285],"common":[94],"research":[95],"applied":[97],"science":[98],"purposes.":[99],"DESCRIPTION:":[100],"QSAR":[102],"DataBank":[103],"(QsarDB)":[104],"aims":[106],"make":[108,263],"the":[109,123,128,162,196,225,231,281,287,298],"outcomes":[112],"modelling":[116],"work":[117,289],"transparent,":[118],"reproducible":[119],"accessible.":[121],"Briefly,":[122],"represented":[126],"QsarDB":[129,193,232],"data":[130,233],"format":[131],"stored":[133],"content-aware":[136],"(a.k.a.":[138],"smart":[139,282],"repository).":[140],"Content":[141],"awareness":[142],"has":[143],"two":[144],"dimensions.":[145],"First,":[146],"organized":[149],"collections":[151],"then":[153],"collection":[155],"hierarchies":[156],"based":[157],"on":[158,269],"their":[159],"metadata.":[160],"Second,":[161],"not":[165],"only":[166],"an":[167],"environment":[168],"browsing":[170],"downloading":[172],"(the":[174],"QDB":[175],"archive)":[176],"but":[177],"also":[178],"offers":[179],"integrated":[180],"services,":[181],"such":[182],"model":[184,215,218],"analysis":[185],"visualization":[187],"prediction":[189],"making.":[190],"CONCLUSIONS:":[191],"unlocks":[195],"potential":[197],"by":[206,255,267],"allowing":[207],"new":[208],"different":[210],"types":[211],"collaboration":[213],"between":[214],"developers":[216,250],"users.":[219],"key":[221],"enabling":[222],"factor":[223],"representation":[226],"(Q)SAR":[228],"format,":[234],"which":[235],"it":[237],"easy":[238],"preserve":[240],"share":[242],"all":[243],"relevant":[244],"data,":[245],"information":[246,271],"knowledge.":[248],"Model":[249,260],"can":[251,262],"become":[252],"more":[253,264,276],"productive":[254],"effectively":[256],"reusing":[257],"prior":[258],"art.":[259],"users":[261],"confident":[265],"decisions":[266],"relying":[268],"supporting":[270],"larger":[274],"diverse":[277],"than":[278],"before.":[279],"Furthermore,":[280],"automates":[284],"mundane":[288],"(e.g.,":[290],"collecting,":[291],"systematizing,":[292],"reporting":[294],"data),":[295],"thereby":[296],"reducing":[297],"time":[299],"decision.":[301]},"counts_by_year":[{"year":2026,"cited_by_count":9},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":11},{"year":2023,"cited_by_count":11},{"year":2022,"cited_by_count":11},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":8},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":2}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
