{"id":"https://openalex.org/W1961830156","doi":"https://doi.org/10.1186/s13321-015-0081-7","title":"Standards-based metadata procedures for retrieving data for display or mining utilizing persistent (data-DOI) identifiers","display_name":"Standards-based metadata procedures for retrieving data for display or mining utilizing persistent (data-DOI) identifiers","publication_year":2015,"publication_date":"2015-08-07","ids":{"openalex":"https://openalex.org/W1961830156","doi":"https://doi.org/10.1186/s13321-015-0081-7","mag":"1961830156","pmid":"https://pubmed.ncbi.nlm.nih.gov/26257829"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-015-0081-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-015-0081-7","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-015-0081-7","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-015-0081-7","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5083345049","display_name":"M J Harvey","orcid":"https://orcid.org/0000-0003-1797-3186"},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Matthew J Harvey","raw_affiliation_strings":["High Performance Computing Service, Imperial College London, London, UK"],"raw_orcid":"https://orcid.org/0000-0003-1797-3186","affiliations":[{"raw_affiliation_string":"High Performance Computing Service, Imperial College London, London, UK","institution_ids":["https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030197216","display_name":"Nicholas Mason","orcid":"https://orcid.org/0000-0001-9475-0328"},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Nicholas J Mason","raw_affiliation_strings":["Department of Chemistry, Imperial College London, South Kensington Campus, London, SW7 2AZ UK","Department of Chemistry, Imperial College London, London, UK"],"raw_orcid":"https://orcid.org/0000-0001-9475-0328","affiliations":[{"raw_affiliation_string":"Department of Chemistry, Imperial College London, South Kensington Campus, London, SW7 2AZ UK","institution_ids":["https://openalex.org/I47508984"]},{"raw_affiliation_string":"Department of Chemistry, Imperial College London, London, UK","institution_ids":["https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039525933","display_name":"Andrew Mclean","orcid":"https://orcid.org/0000-0002-1653-7430"},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Andrew McLean","raw_affiliation_strings":["High Performance Computing Service, Imperial College London, London, UK"],"raw_orcid":"https://orcid.org/0000-0002-1653-7430","affiliations":[{"raw_affiliation_string":"High Performance Computing Service, Imperial College London, London, UK","institution_ids":["https://openalex.org/I47508984"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5072164503","display_name":"Henry S. Rzepa","orcid":"https://orcid.org/0000-0002-8635-8390"},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Henry S Rzepa","raw_affiliation_strings":["Department of Chemistry, Imperial College London, South Kensington Campus, London, SW7 2AZ UK","Department of Chemistry, Imperial College London, London, UK"],"raw_orcid":"https://orcid.org/0000-0002-8635-8390","affiliations":[{"raw_affiliation_string":"Department of Chemistry, Imperial College London, South Kensington Campus, London, SW7 2AZ UK","institution_ids":["https://openalex.org/I47508984"]},{"raw_affiliation_string":"Department of Chemistry, Imperial College London, London, UK","institution_ids":["https://openalex.org/I47508984"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5072164503"],"corresponding_institution_ids":["https://openalex.org/I47508984"],"apc_list":{"value":2390,"currency":"USD","value_usd":2390},"apc_paid":{"value":2390,"currency":"USD","value_usd":2390},"fwci":0.8256,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.7160622,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"7","issue":"1","first_page":"37","last_page":"37"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.3573000133037567,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.3573000133037567,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.21299999952316284,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.20340000092983246,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/discoverability","display_name":"Discoverability","score":0.8823697566986084},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8367528915405273},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.8142755627632141},{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.8126449584960938},{"id":"https://openalex.org/keywords/metadata-repository","display_name":"Metadata repository","score":0.715592086315155},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.695705771446228},{"id":"https://openalex.org/keywords/data-element","display_name":"Data element","score":0.5738999843597412},{"id":"https://openalex.org/keywords/meta-data-services","display_name":"Meta Data Services","score":0.4556579291820526},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.41882622241973877},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.38548195362091064},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.38410484790802}],"concepts":[{"id":"https://openalex.org/C2778531742","wikidata":"https://www.wikidata.org/wiki/Q17009281","display_name":"Discoverability","level":2,"score":0.8823697566986084},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8367528915405273},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.8142755627632141},{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.8126449584960938},{"id":"https://openalex.org/C153048206","wikidata":"https://www.wikidata.org/wiki/Q3454922","display_name":"Metadata repository","level":3,"score":0.715592086315155},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.695705771446228},{"id":"https://openalex.org/C30872290","wikidata":"https://www.wikidata.org/wiki/Q1172389","display_name":"Data element","level":3,"score":0.5738999843597412},{"id":"https://openalex.org/C136976847","wikidata":"https://www.wikidata.org/wiki/Q6822297","display_name":"Meta Data Services","level":4,"score":0.4556579291820526},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.41882622241973877},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.38548195362091064},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.38410484790802},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/s13321-015-0081-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-015-0081-7","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-015-0081-7","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:26257829","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26257829","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":"Journal Article"},{"id":"pmh:oai:europepmc.org:3507764","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4528360","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:spiral.imperial.ac.uk:10044/1/34138","is_oa":true,"landing_page_url":"http://hdl.handle.net/10044/1/34138","pdf_url":null,"source":{"id":"https://openalex.org/S4306401396","display_name":"Spiral (Imperial College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I47508984","host_organization_name":"Imperial College London","host_organization_lineage":["https://openalex.org/I47508984"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1186/s13321-015-0081-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-015-0081-7","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-015-0081-7","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1961830156.pdf","grobid_xml":"https://content.openalex.org/works/W1961830156.grobid-xml"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W1640748652","https://openalex.org/W1902120158","https://openalex.org/W1953353198","https://openalex.org/W2004362149","https://openalex.org/W2006845908","https://openalex.org/W2011703027","https://openalex.org/W2024754921","https://openalex.org/W2028046413","https://openalex.org/W2033917497","https://openalex.org/W2063945640","https://openalex.org/W2071513876","https://openalex.org/W2080133951","https://openalex.org/W2080635178","https://openalex.org/W2091229190","https://openalex.org/W2093135499","https://openalex.org/W2145538332","https://openalex.org/W2257287471","https://openalex.org/W2595301159","https://openalex.org/W2992885782","https://openalex.org/W4246451368","https://openalex.org/W4285719527","https://openalex.org/W4394283295","https://openalex.org/W4394453568","https://openalex.org/W4394524580","https://openalex.org/W6958766650"],"related_works":["https://openalex.org/W2374379029","https://openalex.org/W3016521766","https://openalex.org/W2183628870","https://openalex.org/W2379265733","https://openalex.org/W92613187","https://openalex.org/W3084772717","https://openalex.org/W1503116306","https://openalex.org/W2154730027","https://openalex.org/W2608871261","https://openalex.org/W2221833967"],"abstract_inverted_index":{"BACKGROUND:":[0],"We":[1,67],"describe":[2],"three":[3],"different":[4],"procedures":[5,45],"based":[6],"on":[7],"metadata":[8,108],"standards":[9],"for":[10,71,86],"enabling":[11],"automated":[12,72],"retrieval":[13,73],"of":[14,24,30,33,56,74,89,101,106,116],"scientific":[15],"data":[16,35,75,79],"from":[17,76],"digital":[18],"repositories":[19],"utilising":[20],"the":[21,25,31,34,49,99],"persistent":[22],"identifier":[23],"dataset":[26],"with":[27,81],"optional":[28],"specification":[29],"attributes":[32],"document":[36],"such":[37],"as":[38,53,62],"filename":[39],"or":[40],"media":[41],"type.":[42],"RESULTS:":[43],"The":[44],"are":[46],"demonstrated":[47],"using":[48,107],"JSmol":[50],"molecular":[51,91],"visualizer":[52],"a":[54,57,63,77,87,103],"component":[55],"web":[58],"page":[59],"and":[60,93,114],"Avogadro":[61],"stand-alone":[64],"modelling":[65],"program.":[66],"compare":[68],"our":[69],"methods":[70,97],"standards-compliant":[78],"repository":[80],"those":[82],"currently":[83],"in":[84],"operation":[85],"selection":[88],"existing":[90],"databases":[92],"repositories.":[94],"CONCLUSIONS:":[95],"Our":[96],"illustrate":[98],"importance":[100],"adopting":[102],"standards-based":[104],"approach":[105],"declarations":[109],"to":[110,113],"increase":[111],"access":[112],"discoverability":[115],"repository-based":[117],"data.":[118],"Graphical":[119],"abstract.":[120]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":1}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
