{"id":"https://openalex.org/W2138095945","doi":"https://doi.org/10.1186/s13321-015-0057-7","title":"Machines first, humans second: on the importance of algorithmic interpretation of open chemistry data","display_name":"Machines first, humans second: on the importance of algorithmic interpretation of open chemistry data","publication_year":2015,"publication_date":"2015-03-20","ids":{"openalex":"https://openalex.org/W2138095945","doi":"https://doi.org/10.1186/s13321-015-0057-7","mag":"2138095945","pmid":"https://pubmed.ncbi.nlm.nih.gov/25798198"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-015-0057-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-015-0057-7","pdf_url":null,"source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1186/s13321-015-0057-7","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5034678376","display_name":"Alex M. Clark","orcid":"https://orcid.org/0000-0002-3395-4666"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Alex M Clark","raw_affiliation_strings":["Molecular Materials Informatics, 1900 St. Jacques #302, Montreal, H3J 2S1, QC Canada","Molecular Materials Informatics, 1900 St. Jacques #302, Montreal, H3J 2S1, , QC, Canada"],"affiliations":[{"raw_affiliation_string":"Molecular Materials Informatics, 1900 St. Jacques #302, Montreal, H3J 2S1, QC Canada","institution_ids":[]},{"raw_affiliation_string":"Molecular Materials Informatics, 1900 St. Jacques #302, Montreal, H3J 2S1, , QC, Canada","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062051745","display_name":"Antony Williams","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Antony J Williams","raw_affiliation_strings":["Royal Society of Chemistry, 904 Tamaras Circle, Wake Forest, NC 27587 USA","Royal Society of Chemistry, 904 Tamaras Circle, Wake Forest, NC, 27587, USA"],"affiliations":[{"raw_affiliation_string":"Royal Society of Chemistry, 904 Tamaras Circle, Wake Forest, NC 27587 USA","institution_ids":[]},{"raw_affiliation_string":"Royal Society of Chemistry, 904 Tamaras Circle, Wake Forest, NC, 27587, USA","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5073973321","display_name":"Sean Ekins","orcid":"https://orcid.org/0000-0002-5691-5790"},"institutions":[{"id":"https://openalex.org/I4210148032","display_name":"Collaborations Pharmaceuticals (United States)","ror":"https://ror.org/04m718665","country_code":"US","type":"company","lineage":["https://openalex.org/I4210148032"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sean Ekins","raw_affiliation_strings":["Collaborations in Chemistry, 5616 Hilltop Needmore Road, Fuquay-Varina, NC 27526 USA ; Collaborative Drug Discovery, 1633 Bayshore Highway, Suite 342, Burlingame, CA 94010 USA","Collaborations in Chemistry, 5616 Hilltop Needmore Road, Fuquay-Varina, NC, 27526, USA"],"affiliations":[{"raw_affiliation_string":"Collaborations in Chemistry, 5616 Hilltop Needmore Road, Fuquay-Varina, NC 27526 USA ; Collaborative Drug Discovery, 1633 Bayshore Highway, Suite 342, Burlingame, CA 94010 USA","institution_ids":[]},{"raw_affiliation_string":"Collaborations in Chemistry, 5616 Hilltop Needmore Road, Fuquay-Varina, NC, 27526, USA","institution_ids":["https://openalex.org/I4210148032"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5034678376"],"corresponding_institution_ids":[],"apc_list":{"value":1290,"currency":"GBP","value_usd":1582},"apc_paid":{"value":1290,"currency":"GBP","value_usd":1582},"fwci":2.41,"has_fulltext":false,"cited_by_count":33,"citation_normalized_percentile":{"value":0.89126368,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"7","issue":"1","first_page":"9","last_page":"9"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9800999760627747,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9768999814987183,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7952291965484619},{"id":"https://openalex.org/keywords/presentation","display_name":"Presentation (obstetrics)","score":0.7356492280960083},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.6813438534736633},{"id":"https://openalex.org/keywords/interpretation","display_name":"Interpretation (philosophy)","score":0.5751527547836304},{"id":"https://openalex.org/keywords/open-data","display_name":"Open data","score":0.4854038655757904},{"id":"https://openalex.org/keywords/data-sharing","display_name":"Data sharing","score":0.4355015158653259},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3207201361656189},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2533252537250519}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7952291965484619},{"id":"https://openalex.org/C2777601897","wikidata":"https://www.wikidata.org/wiki/Q3409113","display_name":"Presentation (obstetrics)","level":2,"score":0.7356492280960083},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.6813438534736633},{"id":"https://openalex.org/C527412718","wikidata":"https://www.wikidata.org/wiki/Q855395","display_name":"Interpretation (philosophy)","level":2,"score":0.5751527547836304},{"id":"https://openalex.org/C2780535194","wikidata":"https://www.wikidata.org/wiki/Q309901","display_name":"Open data","level":2,"score":0.4854038655757904},{"id":"https://openalex.org/C2779965156","wikidata":"https://www.wikidata.org/wiki/Q5227350","display_name":"Data sharing","level":3,"score":0.4355015158653259},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3207201361656189},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2533252537250519},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C204787440","wikidata":"https://www.wikidata.org/wiki/Q188504","display_name":"Alternative medicine","level":2,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C126838900","wikidata":"https://www.wikidata.org/wiki/Q77604","display_name":"Radiology","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1186/s13321-015-0057-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-015-0057-7","pdf_url":null,"source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:25798198","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25798198","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:3331404","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4369291","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13321-015-0057-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-015-0057-7","pdf_url":null,"source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":52,"referenced_works":["https://openalex.org/W1518253129","https://openalex.org/W1524134026","https://openalex.org/W1555323004","https://openalex.org/W1580714437","https://openalex.org/W1779441601","https://openalex.org/W1966456689","https://openalex.org/W1976892175","https://openalex.org/W1984678368","https://openalex.org/W1986378419","https://openalex.org/W1989012153","https://openalex.org/W2001955602","https://openalex.org/W2011047245","https://openalex.org/W2021662118","https://openalex.org/W2024754921","https://openalex.org/W2027482274","https://openalex.org/W2032019374","https://openalex.org/W2033917497","https://openalex.org/W2035382702","https://openalex.org/W2041610798","https://openalex.org/W2051810242","https://openalex.org/W2068604502","https://openalex.org/W2069719501","https://openalex.org/W2085398335","https://openalex.org/W2087279377","https://openalex.org/W2093418308","https://openalex.org/W2096394062","https://openalex.org/W2097056536","https://openalex.org/W2103297848","https://openalex.org/W2110279208","https://openalex.org/W2111044246","https://openalex.org/W2112844927","https://openalex.org/W2116238734","https://openalex.org/W2132289924","https://openalex.org/W2139642094","https://openalex.org/W2142012004","https://openalex.org/W2155372661","https://openalex.org/W2155678816","https://openalex.org/W2163841005","https://openalex.org/W2165671627","https://openalex.org/W2168905447","https://openalex.org/W2210519702","https://openalex.org/W2226876193","https://openalex.org/W2258508590","https://openalex.org/W2258745419","https://openalex.org/W2259165357","https://openalex.org/W2260603044","https://openalex.org/W2265250901","https://openalex.org/W2487152033","https://openalex.org/W3216710323","https://openalex.org/W4242453312","https://openalex.org/W6633276021","https://openalex.org/W6804421655"],"related_works":["https://openalex.org/W4210478786","https://openalex.org/W3177071349","https://openalex.org/W2918033089","https://openalex.org/W4308515122","https://openalex.org/W4365813637","https://openalex.org/W3161481128","https://openalex.org/W4210730450","https://openalex.org/W4292860111","https://openalex.org/W3122576567","https://openalex.org/W3008840588"],"abstract_inverted_index":{"The":[0],"current":[1,160],"rise":[2],"in":[3,74,119,158],"the":[4,29,42,65,120,154,167],"use":[5,196],"of":[6,18,35,44,58,70,81,85,134,153,166],"open":[7,71,175],"lab":[8],"notebook":[9,187],"techniques":[10],"means":[11],"that":[12,37,49,64,100,170],"there":[13],"are":[14,38,79,137],"an":[15],"increasing":[16],"number":[17],"scientists":[19,123,194],"who":[20],"make":[21],"chemical":[22,76],"information":[23],"freely":[24],"and":[25,87,195],"openly":[26],"available":[27],"to":[28,90,94,141],"entire":[30],"community":[31],"as":[32,162,164],"a":[33,55,98,116],"series":[34],"micropublications":[36],"released":[39],"shortly":[40],"after":[41],"conclusion":[43],"each":[45],"experiment.":[46],"We":[47,62,150],"propose":[48],"this":[50,110],"trend":[51],"be":[52,103,172],"accompanied":[53],"by":[54,105,146,193,197],"thorough":[56],"examination":[57],"data":[59,72,126,135,176],"sharing":[60],"priorities.":[61],"argue":[63],"most":[66,131],"significant":[67],"immediate":[68,168],"benefactor":[69],"is":[73,177],"fact":[75],"algorithms,":[77],"which":[78],"capable":[80],"absorbing":[82],"vast":[83],"quantities":[84],"data,":[86],"using":[88,180],"it":[89],"present":[91],"concise":[92],"insights":[93],"working":[95],"chemists,":[96],"on":[97],"scale":[99],"could":[101],"not":[102],"achieved":[104],"traditional":[106],"publication":[107],"methods.":[108],"Making":[109],"goal":[111],"practically":[112],"achievable":[113],"will":[114],"require":[115],"paradigm":[117],"shift":[118],"way":[121],"individual":[122],"translate":[124],"their":[125],"into":[127],"digital":[128],"form,":[129],"since":[130],"contemporary":[132],"methods":[133],"entry":[136],"designed":[138],"for":[139],"presentation":[140],"humans":[142],"rather":[143],"than":[144],"consumption":[145],"machine":[147,182,198],"learning":[148,199],"algorithms.":[149,200],"discuss":[151],"some":[152,165],"complex":[155],"issues":[156],"involved":[157],"fixing":[159],"methods,":[161],"well":[163],"benefits":[169],"can":[171],"gained":[173],"when":[174],"published":[178],"correctly":[179],"unambiguous":[181],"readable":[183],"formats.":[184],"Graphical":[185],"AbstractLab":[186],"entries":[188],"must":[189],"target":[190],"both":[191],"visualisation":[192]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":11},{"year":2015,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
