{"id":"https://openalex.org/W2165644686","doi":"https://doi.org/10.1186/s13321-014-0050-6","title":"A ranking method for the concurrent learning of compounds with various activity profiles","display_name":"A ranking method for the concurrent learning of compounds with various activity profiles","publication_year":2015,"publication_date":"2015-01-15","ids":{"openalex":"https://openalex.org/W2165644686","doi":"https://doi.org/10.1186/s13321-014-0050-6","mag":"2165644686","pmid":"https://pubmed.ncbi.nlm.nih.gov/25643067"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-014-0050-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-014-0050-6","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-014-0050-6","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-014-0050-6","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5088021958","display_name":"Alexander D\u00f6rr","orcid":null},"institutions":[{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Alexander D\u00f6rr","raw_affiliation_strings":["Center for Bioinformatics T\u00fcbingen (ZBIT), University of Tuebingen, Sand 1, T\u00fcbingen, 72076 Germany","Center for Bioinformatics T\u00fcbingen (ZBIT), University of Tuebingen, Sand 1, T\u00fcbingen, 72076, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics T\u00fcbingen (ZBIT), University of Tuebingen, Sand 1, T\u00fcbingen, 72076 Germany","institution_ids":["https://openalex.org/I8087733"]},{"raw_affiliation_string":"Center for Bioinformatics T\u00fcbingen (ZBIT), University of Tuebingen, Sand 1, T\u00fcbingen, 72076, Germany","institution_ids":["https://openalex.org/I8087733"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071201024","display_name":"Lars Rosenbaum","orcid":null},"institutions":[{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Lars Rosenbaum","raw_affiliation_strings":["Center for Bioinformatics T\u00fcbingen (ZBIT), University of Tuebingen, Sand 1, T\u00fcbingen, 72076 Germany","Center for Bioinformatics T\u00fcbingen (ZBIT), University of Tuebingen, Sand 1, T\u00fcbingen, 72076, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics T\u00fcbingen (ZBIT), University of Tuebingen, Sand 1, T\u00fcbingen, 72076 Germany","institution_ids":["https://openalex.org/I8087733"]},{"raw_affiliation_string":"Center for Bioinformatics T\u00fcbingen (ZBIT), University of Tuebingen, Sand 1, T\u00fcbingen, 72076, Germany","institution_ids":["https://openalex.org/I8087733"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5004958444","display_name":"Andreas Zell","orcid":"https://orcid.org/0000-0003-3299-2211"},"institutions":[{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Andreas Zell","raw_affiliation_strings":["Center for Bioinformatics T\u00fcbingen (ZBIT), University of Tuebingen, Sand 1, T\u00fcbingen, 72076 Germany","Center for Bioinformatics T\u00fcbingen (ZBIT), University of Tuebingen, Sand 1, T\u00fcbingen, 72076, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics T\u00fcbingen (ZBIT), University of Tuebingen, Sand 1, T\u00fcbingen, 72076 Germany","institution_ids":["https://openalex.org/I8087733"]},{"raw_affiliation_string":"Center for Bioinformatics T\u00fcbingen (ZBIT), University of Tuebingen, Sand 1, T\u00fcbingen, 72076, Germany","institution_ids":["https://openalex.org/I8087733"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5088021958"],"corresponding_institution_ids":["https://openalex.org/I8087733"],"apc_list":{"value":2390,"currency":"USD","value_usd":2390},"apc_paid":{"value":1743,"currency":"EUR","value_usd":1879},"fwci":3.7002,"has_fulltext":true,"cited_by_count":15,"citation_normalized_percentile":{"value":0.93553178,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"7","issue":"1","first_page":"2","last_page":"2"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.9818999767303467,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.7829921245574951},{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.7372341156005859},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7251682281494141},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.6802769899368286},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.592618465423584},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5779478549957275},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5325901508331299},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.505950391292572},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.48544055223464966},{"id":"https://openalex.org/keywords/learning-to-rank","display_name":"Learning to rank","score":0.42667967081069946},{"id":"https://openalex.org/keywords/ranking-svm","display_name":"Ranking SVM","score":0.4243616759777069},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.34115538001060486},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.32723987102508545},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.18524128198623657},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.12496533989906311},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.07256484031677246}],"concepts":[{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.7829921245574951},{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.7372341156005859},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7251682281494141},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.6802769899368286},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.592618465423584},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5779478549957275},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5325901508331299},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.505950391292572},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.48544055223464966},{"id":"https://openalex.org/C86037889","wikidata":"https://www.wikidata.org/wiki/Q4330127","display_name":"Learning to rank","level":3,"score":0.42667967081069946},{"id":"https://openalex.org/C124975894","wikidata":"https://www.wikidata.org/wiki/Q7293290","display_name":"Ranking SVM","level":3,"score":0.4243616759777069},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.34115538001060486},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.32723987102508545},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.18524128198623657},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.12496533989906311},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.07256484031677246},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1186/s13321-014-0050-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-014-0050-6","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-014-0050-6","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:25643067","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25643067","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:4306736","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4306736","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Cheminform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13321-014-0050-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-014-0050-6","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-014-0050-6","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6200000047683716,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G8411957293","display_name":"Verbundprojekt: Kompetenznetz Diabetes: Projekt Biomarker: Teilprojekte Z und 4. TP Z: Zentrale Koordinierung der netzeigenen und \u00fcbergreifenden Metabolomics-Plattform und Bio-Bankproben; TP 4: Biomarker-Identifizierung aus massenspektrometrischen Daten mittels maschineller Lernverfahren und Bioinformatik","funder_award_id":"01GI0803","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"}],"funders":[{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2165644686.pdf","grobid_xml":"https://content.openalex.org/works/W2165644686.grobid-xml"},"referenced_works_count":45,"referenced_works":["https://openalex.org/W74439177","https://openalex.org/W1485382552","https://openalex.org/W1504533062","https://openalex.org/W1970651561","https://openalex.org/W1970814316","https://openalex.org/W1983610905","https://openalex.org/W1986684432","https://openalex.org/W1988037271","https://openalex.org/W1991980634","https://openalex.org/W1992578437","https://openalex.org/W2002915579","https://openalex.org/W2010700988","https://openalex.org/W2017081079","https://openalex.org/W2019241564","https://openalex.org/W2021630848","https://openalex.org/W2028733293","https://openalex.org/W2035720976","https://openalex.org/W2040369353","https://openalex.org/W2045017572","https://openalex.org/W2057069496","https://openalex.org/W2059274030","https://openalex.org/W2062941476","https://openalex.org/W2063511018","https://openalex.org/W2063906445","https://openalex.org/W2077057821","https://openalex.org/W2096560421","https://openalex.org/W2096864392","https://openalex.org/W2098889731","https://openalex.org/W2099768941","https://openalex.org/W2111759875","https://openalex.org/W2118585731","https://openalex.org/W2121612327","https://openalex.org/W2122995608","https://openalex.org/W2126255586","https://openalex.org/W2137705897","https://openalex.org/W2140595402","https://openalex.org/W2148603752","https://openalex.org/W2148797284","https://openalex.org/W2151338484","https://openalex.org/W2152932486","https://openalex.org/W2157791002","https://openalex.org/W2177508090","https://openalex.org/W4237095724","https://openalex.org/W4249138131","https://openalex.org/W6677656871"],"related_works":["https://openalex.org/W3127142483","https://openalex.org/W2138488530","https://openalex.org/W2031468273","https://openalex.org/W2370100764","https://openalex.org/W4385565564","https://openalex.org/W2387658907","https://openalex.org/W2351112195","https://openalex.org/W4378464883","https://openalex.org/W2898073868","https://openalex.org/W2110822809"],"abstract_inverted_index":{"BACKGROUND:":[0],"In":[1],"this":[2,25],"study,":[3],"we":[4],"present":[5],"a":[6,27,72,135],"SVM-based":[7,131],"ranking":[8,132],"algorithm":[9],"for":[10,94,138],"the":[11,47,107,162],"concurrent":[12],"learning":[13],"of":[14,30,58,147,164],"compounds":[15,101,118,156],"with":[16,49,119,155,157,167],"different":[17,79],"activity":[18,109,159,172],"profiles":[19,160],"and":[20,71,96,161],"their":[21],"varying":[22],"prioritization.":[23],"To":[24],"end,":[26],"specific":[28],"labeling":[29],"each":[31],"compound":[32],"was":[33],"elaborated":[34],"in":[35,141],"order":[36],"to":[37,125,176],"infer":[38],"virtual":[39,98,139],"screening":[40,61,140],"models":[41,62],"against":[42],"multiple":[43],"targets.":[44],"We":[45],"compared":[46,124],"method":[48],"several":[50],"state-of-the-art":[51],"SVM":[52,128],"classification":[53],"techniques":[54],"that":[55,87,102],"are":[56,111],"capable":[57],"inferring":[59],"multi-target":[60,97,127,142],"on":[63],"three":[64,78],"chemical":[65],"data":[66,75],"sets":[67],"(cytochrome":[68],"P450s,":[69],"dehydrogenases,":[70],"trypsin-like":[73],"protease":[74],"set)":[76],"containing":[77],"biological":[80],"targets":[81],"each.":[82],"RESULTS:":[83],"The":[84,145],"experiments":[85],"show":[86,90],"ranking-based":[88],"algorithms":[89],"an":[91,120,168],"increased":[92],"performance":[93],"single-":[95],"screening.":[99],"Moreover,":[100],"do":[103],"not":[104,175],"completely":[105],"fulfill":[106],"desired":[108],"profile":[110,173],"still":[112],"ranked":[113],"higher":[114],"than":[115],"decoys":[116],"or":[117],"entirely":[121],"undesired":[122],"profile,":[123],"other":[126],"methods.":[129],"CONCLUSIONS:":[130],"methods":[133,149],"constitute":[134],"valuable":[136],"approach":[137],"drug":[143],"design.":[144],"utilization":[146],"such":[148],"is":[150,174],"most":[151],"helpful":[152],"when":[153],"dealing":[154],"various":[158],"finding":[163],"many":[165],"ligands":[166],"already":[169],"perfectly":[170],"matching":[171],"be":[177],"expected.":[178]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":8},{"year":2015,"cited_by_count":1}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2016-06-24T00:00:00"}
