{"id":"https://openalex.org/W2098334118","doi":"https://doi.org/10.1186/s13321-014-0043-5","title":"UniChem: extension of InChI-based compound mapping to salt, connectivity and stereochemistry layers","display_name":"UniChem: extension of InChI-based compound mapping to salt, connectivity and stereochemistry layers","publication_year":2014,"publication_date":"2014-09-03","ids":{"openalex":"https://openalex.org/W2098334118","doi":"https://doi.org/10.1186/s13321-014-0043-5","mag":"2098334118","pmid":"https://pubmed.ncbi.nlm.nih.gov/25221628"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-014-0043-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-014-0043-5","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-014-0043-5","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-014-0043-5","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5043447161","display_name":"Jon Chambers","orcid":null},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Jon Chambers","raw_affiliation_strings":["ChEMBL, European Molecular Biology Laboratory - European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton Cambridge, CB10 1SD UK","ChEMBL, European Molecular Biology Laboratory \u2013 European Bioinformatics Institute (EMBL-EBI), Cambridge, UK"],"affiliations":[{"raw_affiliation_string":"ChEMBL, European Molecular Biology Laboratory - European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton Cambridge, CB10 1SD UK","institution_ids":[]},{"raw_affiliation_string":"ChEMBL, European Molecular Biology Laboratory \u2013 European Bioinformatics Institute (EMBL-EBI), Cambridge, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035336506","display_name":"Mark Davies","orcid":"https://orcid.org/0000-0002-8011-0300"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Mark Davies","raw_affiliation_strings":["ChEMBL, European Molecular Biology Laboratory - European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton Cambridge, CB10 1SD UK","ChEMBL, European Molecular Biology Laboratory \u2013 European Bioinformatics Institute (EMBL-EBI), Cambridge, UK"],"affiliations":[{"raw_affiliation_string":"ChEMBL, European Molecular Biology Laboratory - European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton Cambridge, CB10 1SD UK","institution_ids":[]},{"raw_affiliation_string":"ChEMBL, European Molecular Biology Laboratory \u2013 European Bioinformatics Institute (EMBL-EBI), Cambridge, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050930900","display_name":"Anna Gaulton","orcid":"https://orcid.org/0000-0003-2634-7400"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Anna Gaulton","raw_affiliation_strings":["ChEMBL, European Molecular Biology Laboratory - European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton Cambridge, CB10 1SD UK","ChEMBL, European Molecular Biology Laboratory \u2013 European Bioinformatics Institute (EMBL-EBI), Cambridge, UK"],"affiliations":[{"raw_affiliation_string":"ChEMBL, European Molecular Biology Laboratory - European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton Cambridge, CB10 1SD UK","institution_ids":[]},{"raw_affiliation_string":"ChEMBL, European Molecular Biology Laboratory \u2013 European Bioinformatics Institute (EMBL-EBI), Cambridge, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065497953","display_name":"George Papadatos","orcid":"https://orcid.org/0000-0002-8314-7061"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"George Papadatos","raw_affiliation_strings":["ChEMBL, European Molecular Biology Laboratory - European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton Cambridge, CB10 1SD UK","ChEMBL, European Molecular Biology Laboratory \u2013 European Bioinformatics Institute (EMBL-EBI), Cambridge, UK"],"affiliations":[{"raw_affiliation_string":"ChEMBL, European Molecular Biology Laboratory - European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton Cambridge, CB10 1SD UK","institution_ids":[]},{"raw_affiliation_string":"ChEMBL, European Molecular Biology Laboratory \u2013 European Bioinformatics Institute (EMBL-EBI), Cambridge, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003544163","display_name":"Anne Hersey","orcid":"https://orcid.org/0000-0003-4679-6211"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Anne Hersey","raw_affiliation_strings":["ChEMBL, European Molecular Biology Laboratory - European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton Cambridge, CB10 1SD UK","ChEMBL, European Molecular Biology Laboratory \u2013 European Bioinformatics Institute (EMBL-EBI), Cambridge, UK"],"affiliations":[{"raw_affiliation_string":"ChEMBL, European Molecular Biology Laboratory - European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton Cambridge, CB10 1SD UK","institution_ids":[]},{"raw_affiliation_string":"ChEMBL, European Molecular Biology Laboratory \u2013 European Bioinformatics Institute (EMBL-EBI), Cambridge, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5001723208","display_name":"John P. Overington","orcid":"https://orcid.org/0000-0002-5859-1064"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"John P Overington","raw_affiliation_strings":["ChEMBL, European Molecular Biology Laboratory - European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton Cambridge, CB10 1SD UK","ChEMBL, European Molecular Biology Laboratory \u2013 European Bioinformatics Institute (EMBL-EBI), Cambridge, UK"],"affiliations":[{"raw_affiliation_string":"ChEMBL, European Molecular Biology Laboratory - European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton Cambridge, CB10 1SD UK","institution_ids":[]},{"raw_affiliation_string":"ChEMBL, European Molecular Biology Laboratory \u2013 European Bioinformatics Institute (EMBL-EBI), Cambridge, UK","institution_ids":["https://openalex.org/I1303153112"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5043447161"],"corresponding_institution_ids":["https://openalex.org/I1303153112"],"apc_list":{"value":1290,"currency":"GBP","value_usd":1582},"apc_paid":{"value":1290,"currency":"GBP","value_usd":1582},"fwci":2.5619,"has_fulltext":true,"cited_by_count":33,"citation_normalized_percentile":{"value":0.90035285,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"6","issue":"1","first_page":"43","last_page":"43"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9876999855041504,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9869999885559082,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7767139077186584},{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.5967044234275818},{"id":"https://openalex.org/keywords/parsing","display_name":"Parsing","score":0.5273371934890747},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.41901981830596924},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.4102335572242737},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.39303529262542725},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.24112239480018616}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7767139077186584},{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.5967044234275818},{"id":"https://openalex.org/C186644900","wikidata":"https://www.wikidata.org/wiki/Q194152","display_name":"Parsing","level":2,"score":0.5273371934890747},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.41901981830596924},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4102335572242737},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.39303529262542725},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.24112239480018616}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1186/s13321-014-0043-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-014-0043-5","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-014-0043-5","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:25221628","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25221628","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:4158273","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4158273","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"J Cheminform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13321-014-0043-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-014-0043-5","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-014-0043-5","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.49000000953674316}],"awards":[{"id":"https://openalex.org/G5801879276","display_name":null,"funder_award_id":"EP/I037229/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2098334118.pdf","grobid_xml":"https://content.openalex.org/works/W2098334118.grobid-xml"},"referenced_works_count":16,"referenced_works":["https://openalex.org/W71547456","https://openalex.org/W1835740130","https://openalex.org/W1975875968","https://openalex.org/W2013434113","https://openalex.org/W2016455326","https://openalex.org/W2041610798","https://openalex.org/W2057069496","https://openalex.org/W2077513513","https://openalex.org/W2087563523","https://openalex.org/W2090347317","https://openalex.org/W2096541451","https://openalex.org/W2097186436","https://openalex.org/W2116238734","https://openalex.org/W2129370330","https://openalex.org/W2600906272","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2502722637","https://openalex.org/W2390777183","https://openalex.org/W1564661574","https://openalex.org/W1840287803","https://openalex.org/W2384808441","https://openalex.org/W1882848237","https://openalex.org/W2364838364","https://openalex.org/W2355975493","https://openalex.org/W2594281132","https://openalex.org/W2002952260"],"abstract_inverted_index":{"UniChem":[0,26,79,163],"is":[1,44,184],"a":[2,39,175],"low-maintenance,":[3],"fast":[4],"and":[5,48,112,121,131,152,181,193,199],"freely":[6],"available":[7,14],"compound":[8],"identifier":[9],"mapping":[10],"service,":[11,87],"recently":[12],"made":[13],"on":[15,29,97],"the":[16,20,30,66,71,98,104,113,149,161,182,188,195,217,242],"Internet.":[17],"Until":[18],"now,":[19],"criterion":[21],"of":[22,32,41,50,70,100,107,125,142,157,169,177,234,244],"molecular":[23,84,235],"equivalence":[24,236],"within":[25,78,241],"has":[27],"been":[28],"basis":[31,99],"complete":[33,101],"identity":[34,102],"between":[35,103,197],"Standard":[36,72,110,126],"InChIs.":[37],"However,":[38],"limitation":[40],"this":[42,138],"approach":[43],"that":[45,80],"stereoisomers,":[46],"isotopes":[47],"salts":[49,132],"otherwise":[51],"identical":[52,245],"molecules":[53,92],"are":[54],"not":[55],"considered":[56],"as":[57],"related.":[58],"Here,":[59],"we":[60,63],"describe":[61],"how":[62],"have":[64,159],"exploited":[65],"layered":[67],"structural":[68],"representation":[69],"InChI":[73,127],"to":[74,93,118,133,148,186,190,212,215,229],"create":[75],"new":[76],"functionality":[77,164],"integrates":[81],"these":[82,143],"related":[83],"forms.":[85],"The":[86,167],"called":[88],"'Connectivity":[89],"Search'":[90],"allows":[91],"be":[94,135,172,208],"first":[95],"matched":[96],"connectivity":[105],"layer":[106],"their":[108,224,231,238],"corresponding":[109],"InChIs,":[111],"remaining":[114],"layers":[115],"then":[116],"compared":[117],"highlight":[119],"stereochemical":[120],"isotopic":[122],"differences.":[123],"Parsing":[124],"sub-layers":[128],"permits":[129],"mixtures":[130],"also":[134],"included":[136],"in":[137,219],"integration":[139],"process.":[140],"Implementation":[141],"enhancements":[144],"required":[145],"simple":[146],"modifications":[147],"schema,":[150],"loader":[151],"web":[153,204],"application,":[154],"but":[155],"none":[156],"which":[158],"changed":[160],"original":[162],"or":[165,228],"services.":[166],"scope":[168],"queries":[170],"may":[171,207],"varied":[173],"using":[174],"variety":[176],"easily":[178,209],"configurable":[179],"options,":[180],"output":[183,206],"annotated":[185],"assist":[187],"user":[189],"filter,":[191],"sort":[192],"understand":[194],"difference":[196],"query":[198],"retrieved":[200],"structures.":[201],"A":[202],"RESTful":[203],"service":[205],"processed":[210],"programmatically":[211],"allow":[213],"developers":[214],"present":[216],"data":[218],"whatever":[220],"form":[221],"they":[222],"believe":[223],"users":[225],"will":[226],"require,":[227],"define":[230],"own":[232],"level":[233],"for":[237],"resource,":[239],"albeit":[240],"constraint":[243],"connectivity.":[246]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":8}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
