{"id":"https://openalex.org/W7135011408","doi":"https://doi.org/10.1186/s13040-026-00537-1","title":"BPX-Net: biomarker-preserved explainable networks for disease diagnosis and prognosis","display_name":"BPX-Net: biomarker-preserved explainable networks for disease diagnosis and prognosis","publication_year":2026,"publication_date":"2026-03-12","ids":{"openalex":"https://openalex.org/W7135011408","doi":"https://doi.org/10.1186/s13040-026-00537-1","pmid":"https://pubmed.ncbi.nlm.nih.gov/41821041"},"language":"en","primary_location":{"id":"doi:10.1186/s13040-026-00537-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13040-026-00537-1","pdf_url":null,"source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1186/s13040-026-00537-1","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5128899868","display_name":"Jun Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I4210123185","display_name":"Zhejiang Lab","ror":"https://ror.org/02m2h7991","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210123185"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jun Wang","raw_affiliation_strings":["Zhejiang Key Laboratory of Big Data Intelligent Computing, School of Computer and Computing Science, Hangzhou City University, Hangzhou, China. wangjun@hzcu.edu.cn"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Zhejiang Key Laboratory of Big Data Intelligent Computing, School of Computer and Computing Science, Hangzhou City University, Hangzhou, China. wangjun@hzcu.edu.cn","institution_ids":["https://openalex.org/I4210123185"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056585213","display_name":"Songchang Chen","orcid":null},"institutions":[{"id":"https://openalex.org/I4210146205","display_name":"Obstetrics and Gynecology Hospital of Fudan University","ror":"https://ror.org/04rhdtb47","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210146205"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Songchang Chen","raw_affiliation_strings":["Institute of Reproduction and Development, Shanghai Key Laboratory of Reproduction and Development, Obstetrics and Gynecology Hospital, Fudan University, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Reproduction and Development, Shanghai Key Laboratory of Reproduction and Development, Obstetrics and Gynecology Hospital, Fudan University, Shanghai, China","institution_ids":["https://openalex.org/I4210146205"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042019482","display_name":"Ru Wen","orcid":"https://orcid.org/0009-0008-6603-0671"},"institutions":[{"id":"https://openalex.org/I151075929","display_name":"Army Medical University","ror":"https://ror.org/05w21nn13","country_code":"CN","type":"education","lineage":["https://openalex.org/I151075929"]},{"id":"https://openalex.org/I4210131174","display_name":"Southwest Hospital","ror":"https://ror.org/02jn36537","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210131174"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ru Wen","raw_affiliation_strings":["Department of Radiology, Southwest Hospital, Army Medical University (Third Military Medical University), Chongqing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Radiology, Southwest Hospital, Army Medical University (Third Military Medical University), Chongqing, China","institution_ids":["https://openalex.org/I151075929","https://openalex.org/I4210131174"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5128836797","display_name":"Haochao Ying","orcid":null},"institutions":[{"id":"https://openalex.org/I4210158318","display_name":"Second Affiliated Hospital of Zhejiang University","ror":"https://ror.org/059cjpv64","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210158318"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Haochao Ying","raw_affiliation_strings":["School of Public Health and Second Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Public Health and Second Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, China","institution_ids":["https://openalex.org/I4210158318"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108909773","display_name":"Wenqiu Xu","orcid":null},"institutions":[{"id":"https://openalex.org/I100135526","display_name":"BGI Group (China)","ror":"https://ror.org/045pn2j94","country_code":"CN","type":"company","lineage":["https://openalex.org/I100135526"]},{"id":"https://openalex.org/I4387152444","display_name":"BGI Genomics","ror":"https://ror.org/0155ctq43","country_code":null,"type":"company","lineage":["https://openalex.org/I100135526","https://openalex.org/I4387152444"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenqiu Xu","raw_affiliation_strings":["Clin Lab, BGI Genomics, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Clin Lab, BGI Genomics, Shanghai, China","institution_ids":["https://openalex.org/I100135526","https://openalex.org/I4387152444"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5128819572","display_name":"Lin Yin","orcid":null},"institutions":[{"id":"https://openalex.org/I4210123185","display_name":"Zhejiang Lab","ror":"https://ror.org/02m2h7991","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210123185"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lin Yin","raw_affiliation_strings":["Zhejiang Key Laboratory of Big Data Intelligent Computing, School of Computer and Computing Science, Hangzhou City University, Hangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Zhejiang Key Laboratory of Big Data Intelligent Computing, School of Computer and Computing Science, Hangzhou City University, Hangzhou, China","institution_ids":["https://openalex.org/I4210123185"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5128813493","display_name":"Xiaojuan Deng","orcid":null},"institutions":[{"id":"https://openalex.org/I87780372","display_name":"Chongqing Medical University","ror":"https://ror.org/017z00e58","country_code":"CN","type":"education","lineage":["https://openalex.org/I87780372"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaojuan Deng","raw_affiliation_strings":["Department of Radiology, The Third Affiliated Hospital of Chongqing Medical University, Chongqing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Radiology, The Third Affiliated Hospital of Chongqing Medical University, Chongqing, China","institution_ids":["https://openalex.org/I87780372"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5128860619","display_name":"Can Han","orcid":null},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Can Han","raw_affiliation_strings":["School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai, China","institution_ids":["https://openalex.org/I183067930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5128863810","display_name":"Qun Zhu","orcid":null},"institutions":[{"id":"https://openalex.org/I4210098460","display_name":"Shanghai University of Traditional Chinese Medicine","ror":"https://ror.org/00z27jk27","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210098460"]},{"id":"https://openalex.org/I4210133418","display_name":"Yueyang Hospital","ror":"https://ror.org/03yd12021","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210133418"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qun Zhu","raw_affiliation_strings":["Department of Medical Genetics, Yueyang Maternal and Child Health Hospital, Yueyang, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical Genetics, Yueyang Maternal and Child Health Hospital, Yueyang, China","institution_ids":["https://openalex.org/I4210133418","https://openalex.org/I4210098460"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5128828058","display_name":"Bin Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I83519826","display_name":"Nanjing Medical University","ror":"https://ror.org/059gcgy73","country_code":"CN","type":"education","lineage":["https://openalex.org/I83519826"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bin Zhang","raw_affiliation_strings":["Changzhou Maternal and Child Health Care Hospital, Changzhou Medical Center, Nanjing Medical University, Changzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Changzhou Maternal and Child Health Care Hospital, Changzhou Medical Center, Nanjing Medical University, Changzhou, China","institution_ids":["https://openalex.org/I83519826"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5128885069","display_name":"Hongyan Tong","orcid":null},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hongyan Tong","raw_affiliation_strings":["Department of Hematology, The First Affiliated Hospital, School of Medicine, Zhejiang University, Hangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Hematology, The First Affiliated Hospital, School of Medicine, Zhejiang University, Hangzhou, China","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5128890244","display_name":"Chen Liu","orcid":null},"institutions":[{"id":"https://openalex.org/I151075929","display_name":"Army Medical University","ror":"https://ror.org/05w21nn13","country_code":"CN","type":"education","lineage":["https://openalex.org/I151075929"]},{"id":"https://openalex.org/I4210131174","display_name":"Southwest Hospital","ror":"https://ror.org/02jn36537","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210131174"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chen Liu","raw_affiliation_strings":["Department of Radiology, Southwest Hospital, Army Medical University (Third Military Medical University), Chongqing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Radiology, Southwest Hospital, Army Medical University (Third Military Medical University), Chongqing, China","institution_ids":["https://openalex.org/I151075929","https://openalex.org/I4210131174"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5128813252","display_name":"Wei Chen","orcid":null},"institutions":[{"id":"https://openalex.org/I4210156066","display_name":"State Key Laboratory of Chemical Engineering","ror":"https://ror.org/05803vc71","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210156066"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wei Chen","raw_affiliation_strings":["State Key Lab of CaD&Cg and the Laboratory of Art and Archaeology Image, Zhejiang University, Hangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Lab of CaD&Cg and the Laboratory of Art and Archaeology Image, Zhejiang University, Hangzhou, China","institution_ids":["https://openalex.org/I4210156066"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5128841231","display_name":"Jie Jin","orcid":null},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jie Jin","raw_affiliation_strings":["Department of Hematology, The First Affiliated Hospital, School of Medicine, Zhejiang University, Hangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Hematology, The First Affiliated Hospital, School of Medicine, Zhejiang University, Hangzhou, China","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016183535","display_name":"Kai Jin","orcid":"https://orcid.org/0000-0003-4369-2417"},"institutions":[{"id":"https://openalex.org/I4210158318","display_name":"Second Affiliated Hospital of Zhejiang University","ror":"https://ror.org/059cjpv64","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210158318"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kai Jin","raw_affiliation_strings":["Eye Center of Second Affiliated Hospital, School of Medicine, Zhejiang University, Hangzhou, China","Zhejiang Provincial Key Laboratory of Ophthalmology, Zhejiang Provincial Clinical Research Center for Eye Diseases, Zhejiang Provincial Engineering Institute on Eye Diseases, Hangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Eye Center of Second Affiliated Hospital, School of Medicine, Zhejiang University, Hangzhou, China","institution_ids":["https://openalex.org/I4210158318"]},{"raw_affiliation_string":"Zhejiang Provincial Key Laboratory of Ophthalmology, Zhejiang Provincial Clinical Research Center for Eye Diseases, Zhejiang Provincial Engineering Institute on Eye Diseases, Hangzhou, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5128902120","display_name":"Chenming Xu","orcid":null},"institutions":[{"id":"https://openalex.org/I4210146205","display_name":"Obstetrics and Gynecology Hospital of Fudan University","ror":"https://ror.org/04rhdtb47","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210146205"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chenming Xu","raw_affiliation_strings":["Institute of Reproduction and Development, Shanghai Key Laboratory of Reproduction and Development, Obstetrics and Gynecology Hospital, Fudan University, Shanghai, China. xuchenm@163.com","Shanghai Key Laboratory of Female Reproductive Endocrine Related Diseases, Shanghai, China. xuchenm@163.com"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Reproduction and Development, Shanghai Key Laboratory of Reproduction and Development, Obstetrics and Gynecology Hospital, Fudan University, Shanghai, China. xuchenm@163.com","institution_ids":["https://openalex.org/I4210146205"]},{"raw_affiliation_string":"Shanghai Key Laboratory of Female Reproductive Endocrine Related Diseases, Shanghai, China. xuchenm@163.com","institution_ids":["https://openalex.org/I4210146205"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068700420","display_name":"Hefeng Huang","orcid":"https://orcid.org/0000-0003-4344-8019"},"institutions":[{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]},{"id":"https://openalex.org/I4210123333","display_name":"Ministry of Education","ror":"https://ror.org/036nq5137","country_code":"TH","type":"government","lineage":["https://openalex.org/I4210123333"]},{"id":"https://openalex.org/I4210146205","display_name":"Obstetrics and Gynecology Hospital of Fudan University","ror":"https://ror.org/04rhdtb47","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210146205"]}],"countries":["CN","TH"],"is_corresponding":false,"raw_author_name":"Hefeng Huang","raw_affiliation_strings":["Institute of Medical Genetics and Development, Key Laboratory of Reproductive Genetics (Ministry of Education) and Women's Hospital, Zhejiang University School of Medicine, Hangzhou, China. huanghefg@hotmail.com","Institute of Reproduction and Development, Shanghai Key Laboratory of Reproduction and Development, Obstetrics and Gynecology Hospital, Fudan University, Shanghai, China. huanghefg@hotmail.com","Research Units of Embryo Original Diseases, Chinese Academy of Medical Sciences, No. 2019RU056, Shanghai, China. huanghefg@hotmail.com"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Medical Genetics and Development, Key Laboratory of Reproductive Genetics (Ministry of Education) and Women's Hospital, Zhejiang University School of Medicine, Hangzhou, China. huanghefg@hotmail.com","institution_ids":["https://openalex.org/I4210123333"]},{"raw_affiliation_string":"Institute of Reproduction and Development, Shanghai Key Laboratory of Reproduction and Development, Obstetrics and Gynecology Hospital, Fudan University, Shanghai, China. huanghefg@hotmail.com","institution_ids":["https://openalex.org/I4210146205"]},{"raw_affiliation_string":"Research Units of Embryo Original Diseases, Chinese Academy of Medical Sciences, No. 2019RU056, Shanghai, China. huanghefg@hotmail.com","institution_ids":["https://openalex.org/I200296433"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5128823250","display_name":"Huafeng Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I4210166576","display_name":"First Affiliated Hospital Zhejiang University","ror":"https://ror.org/05m1p5x56","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210166576"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Huafeng Wang","raw_affiliation_strings":["Department of Hematology, The First Affiliated Hospital, School of Medicine, Zhejiang University, Hangzhou, China. 1509036@zju.edu.cn"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Hematology, The First Affiliated Hospital, School of Medicine, Zhejiang University, Hangzhou, China. 1509036@zju.edu.cn","institution_ids":["https://openalex.org/I4210166576"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5081179416","display_name":"Dahong Qian","orcid":"https://orcid.org/0000-0001-9715-6674"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]},{"id":"https://openalex.org/I4210154361","display_name":"Shanghai Jian Qiao University","ror":"https://ror.org/04xdqtw10","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210154361"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Dahong Qian","raw_affiliation_strings":["School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai, China. dahong.qian@sjtu.edu.cn"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai, China. dahong.qian@sjtu.edu.cn","institution_ids":["https://openalex.org/I183067930","https://openalex.org/I4210154361"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":19,"corresponding_author_ids":["https://openalex.org/A5128899868"],"corresponding_institution_ids":["https://openalex.org/I4210123185"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.45908362,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"19","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.38679999113082886,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.38679999113082886,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12026","display_name":"Explainable Artificial Intelligence (XAI)","score":0.24529999494552612,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.04470000043511391,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interpretability","display_name":"Interpretability","score":0.9379000067710876},{"id":"https://openalex.org/keywords/dropout","display_name":"Dropout (neural networks)","score":0.7315000295639038},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.697700023651123},{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.6462000012397766},{"id":"https://openalex.org/keywords/missing-data","display_name":"Missing data","score":0.6304000020027161},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.5539000034332275},{"id":"https://openalex.org/keywords/feature-engineering","display_name":"Feature engineering","score":0.45890000462532043},{"id":"https://openalex.org/keywords/relevance","display_name":"Relevance (law)","score":0.40869998931884766}],"concepts":[{"id":"https://openalex.org/C2781067378","wikidata":"https://www.wikidata.org/wiki/Q17027399","display_name":"Interpretability","level":2,"score":0.9379000067710876},{"id":"https://openalex.org/C2776145597","wikidata":"https://www.wikidata.org/wiki/Q25339462","display_name":"Dropout (neural networks)","level":2,"score":0.7315000295639038},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.7135999798774719},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7129999995231628},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.7113999724388123},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.697700023651123},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.6462000012397766},{"id":"https://openalex.org/C9357733","wikidata":"https://www.wikidata.org/wiki/Q6878417","display_name":"Missing data","level":2,"score":0.6304000020027161},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.5539000034332275},{"id":"https://openalex.org/C2778827112","wikidata":"https://www.wikidata.org/wiki/Q22245680","display_name":"Feature engineering","level":3,"score":0.45890000462532043},{"id":"https://openalex.org/C158154518","wikidata":"https://www.wikidata.org/wiki/Q7310970","display_name":"Relevance (law)","level":2,"score":0.40869998931884766},{"id":"https://openalex.org/C111030470","wikidata":"https://www.wikidata.org/wiki/Q1430460","display_name":"Curse of dimensionality","level":2,"score":0.390500009059906},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.37880000472068787},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.37380000948905945},{"id":"https://openalex.org/C2984842247","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep neural networks","level":3,"score":0.33059999346733093},{"id":"https://openalex.org/C58489278","wikidata":"https://www.wikidata.org/wiki/Q1172284","display_name":"Data set","level":2,"score":0.32839998602867126},{"id":"https://openalex.org/C70518039","wikidata":"https://www.wikidata.org/wiki/Q16000077","display_name":"Dimensionality reduction","level":2,"score":0.3271999955177307},{"id":"https://openalex.org/C158600405","wikidata":"https://www.wikidata.org/wiki/Q5054566","display_name":"Causal inference","level":2,"score":0.31940001249313354},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.31209999322891235},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.30169999599456787},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.29319998621940613},{"id":"https://openalex.org/C59404180","wikidata":"https://www.wikidata.org/wiki/Q17013334","display_name":"Feature learning","level":2,"score":0.29280000925064087},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.27300000190734863},{"id":"https://openalex.org/C153083717","wikidata":"https://www.wikidata.org/wiki/Q6535263","display_name":"Leverage (statistics)","level":2,"score":0.2583000063896179}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/s13040-026-00537-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13040-026-00537-1","pdf_url":null,"source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},{"id":"pmid:41821041","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41821041","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData mining","raw_type":null},{"id":"pmh:oai:doaj.org/article:40c7231f0e644f2eb1866f4846dff9cf","is_oa":true,"landing_page_url":"https://doaj.org/article/40c7231f0e644f2eb1866f4846dff9cf","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BioData Mining, Vol 19, Iss 1 (2026)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:13097947","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC13097947/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BioData Min","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13040-026-00537-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13040-026-00537-1","pdf_url":null,"source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":42,"referenced_works":["https://openalex.org/W1498436455","https://openalex.org/W2047575731","https://openalex.org/W2102619694","https://openalex.org/W2103441770","https://openalex.org/W2108234281","https://openalex.org/W2135979162","https://openalex.org/W2152496375","https://openalex.org/W2194775991","https://openalex.org/W2195388612","https://openalex.org/W2767128594","https://openalex.org/W2937057287","https://openalex.org/W2982580298","https://openalex.org/W3042514838","https://openalex.org/W3119527628","https://openalex.org/W3139236016","https://openalex.org/W3158966024","https://openalex.org/W3173599183","https://openalex.org/W3174086521","https://openalex.org/W3175623102","https://openalex.org/W3199772305","https://openalex.org/W3216448540","https://openalex.org/W4200310129","https://openalex.org/W4224308193","https://openalex.org/W4231346141","https://openalex.org/W4295932326","https://openalex.org/W4327947056","https://openalex.org/W4366171201","https://openalex.org/W4367844009","https://openalex.org/W4383105306","https://openalex.org/W4390531697","https://openalex.org/W4393411178","https://openalex.org/W4394756762","https://openalex.org/W4394890215","https://openalex.org/W4400552057","https://openalex.org/W4401724677","https://openalex.org/W4402916384","https://openalex.org/W4404105438","https://openalex.org/W4406117717","https://openalex.org/W4406290723","https://openalex.org/W4406292112","https://openalex.org/W4408071852","https://openalex.org/W4411029864"],"related_works":[],"abstract_inverted_index":{"Precise":[0],"diagnosis":[1],"of":[2,10,17,102,143,157,179],"complex":[3],"diseases":[4],"increasingly":[5],"depends":[6],"on":[7,207],"the":[8,14,155,174],"integration":[9],"multimodal":[11,55,192],"data.":[12,159],"However,":[13],"high":[15],"dimensionality":[16],"such":[18,212],"data":[19,197],"makes":[20],"it":[21,106,162],"difficult":[22],"for":[23,191],"traditional":[24],"modeling":[25],"methods":[26],"to":[27,89,98,108,152,196],"efficiently":[28],"identify":[29],"biomarkers,":[30],"while":[31],"deep":[32,49,188],"learning":[33,50,189],"approaches,":[34],"despite":[35],"their":[36],"strong":[37],"predictive":[38],"power,":[39],"often":[40],"lack":[41],"interpretability.":[42],"Here,":[43],"we":[44],"introduce":[45],"BPX-Net,":[46],"a":[47,58,73,99,185],"generalizable":[48],"framework":[51,190],"that":[52],"learns":[53],"compact":[54],"representations":[56],"through":[57],"biomarker-preserving":[59],"dropout":[60,63],"mechanism,":[61],"where":[62],"probabilities":[64],"are":[65],"modulated":[66],"by":[67,82,95,150],"feature":[68],"importance":[69],"scores":[70],"self-learned":[71],"from":[72],"built-in":[74,202],"interpretability":[75],"module":[76],"and,":[77],"when":[78],"available,":[79],"further":[80,172],"informed":[81],"clinical":[83,122,168,177],"priors.":[84],"This":[85],"design":[86],"enables":[87],"BPX-Net":[88,133,183],"make":[90],"robust":[91,195],"predictions":[92],"during":[93],"inference":[94],"selectively":[96],"attending":[97],"sparse":[100],"set":[101],"disease-informative":[103],"predictors,":[104],"making":[105],"insensitive":[107],"missing":[109,158],"values":[110],"in":[111,154],"less":[112],"relevant":[113],"or":[114],"redundant":[115],"variables.":[116],"Across":[117],"multi-center":[118],"cohorts":[119],"covering":[120],"diverse":[121],"tasks":[123],"(disease":[124],"diagnosis,":[125],"prognosis,":[126],"treatment":[127],"response":[128],"prediction,":[129],"and":[130,176,199],"risk":[131],"stratification),":[132],"yields":[134],"substantial":[135],"performance":[136],"gains,":[137],"e.g.":[138],"achieving":[139],"an":[140],"average":[141],"AUC":[142],"85.43%":[144],"across":[145],"four":[146],"tasks,":[147],"outperforming":[148],"baselines":[149],"4%":[151],"20%":[153],"presence":[156],"More":[160],"importantly,":[161],"identifies":[163],"predictors":[164],"aligned":[165],"with":[166,201],"established":[167],"knowledge.":[169],"Cross-hospital":[170],"validation":[171],"confirms":[173],"robustness":[175],"relevance":[178],"these":[180],"predictors.":[181],"Collectively,":[182],"offers":[184],"clinically":[186],"grounded":[187],"analysis,":[193],"intrinsically":[194],"incompleteness":[198],"equipped":[200],"interpretability,":[203],"thereby":[204],"eliminating":[205],"reliance":[206],"computationally":[208],"intensive":[209],"post-hoc":[210],"tools":[211],"as":[213],"SHAP.":[214]},"counts_by_year":[],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2026-03-13T00:00:00"}
