{"id":"https://openalex.org/W4412785943","doi":"https://doi.org/10.1186/s13040-025-00467-4","title":"BioAug-Net: a bioimage sensor-driven attention-augmented segmentation framework with physiological coupling for early prostate cancer detection in T2-weighted MRI","display_name":"BioAug-Net: a bioimage sensor-driven attention-augmented segmentation framework with physiological coupling for early prostate cancer detection in T2-weighted MRI","publication_year":2025,"publication_date":"2025-07-29","ids":{"openalex":"https://openalex.org/W4412785943","doi":"https://doi.org/10.1186/s13040-025-00467-4","pmid":"https://pubmed.ncbi.nlm.nih.gov/40734181"},"language":"en","primary_location":{"id":"doi:10.1186/s13040-025-00467-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13040-025-00467-4","pdf_url":"https://link.springer.com/content/pdf/10.1186/s13040-025-00467-4.pdf","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://link.springer.com/content/pdf/10.1186/s13040-025-00467-4.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5017046956","display_name":"Muhammad Arshad","orcid":"https://orcid.org/0000-0003-2832-8705"},"institutions":[{"id":"https://openalex.org/I168337820","display_name":"Chongqing University of Science and Technology","ror":"https://ror.org/03n3v6d52","country_code":"CN","type":"education","lineage":["https://openalex.org/I168337820"]},{"id":"https://openalex.org/I50632499","display_name":"Chongqing University of Technology","ror":"https://ror.org/04vgbd477","country_code":"CN","type":"education","lineage":["https://openalex.org/I50632499"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Muhammad Arshad","raw_affiliation_strings":["Department of Computer Science and Technology, College of Computer Science, Chongqing University, Chongqing, 400044, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Technology, College of Computer Science, Chongqing University, Chongqing, 400044, China","institution_ids":["https://openalex.org/I168337820","https://openalex.org/I50632499"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072170618","display_name":"Chengliang Wang","orcid":"https://orcid.org/0000-0002-1151-3122"},"institutions":[{"id":"https://openalex.org/I168337820","display_name":"Chongqing University of Science and Technology","ror":"https://ror.org/03n3v6d52","country_code":"CN","type":"education","lineage":["https://openalex.org/I168337820"]},{"id":"https://openalex.org/I50632499","display_name":"Chongqing University of Technology","ror":"https://ror.org/04vgbd477","country_code":"CN","type":"education","lineage":["https://openalex.org/I50632499"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Chengliang Wang","raw_affiliation_strings":["Department of Computer Science and Technology, College of Computer Science, Chongqing University, Chongqing, 400044, China. wangcl@cqu.edu.cn"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Technology, College of Computer Science, Chongqing University, Chongqing, 400044, China. wangcl@cqu.edu.cn","institution_ids":["https://openalex.org/I168337820","https://openalex.org/I50632499"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Muhammad\u00a0Wajeeh Us\u00a0Sima","orcid":null},"institutions":[{"id":"https://openalex.org/I168337820","display_name":"Chongqing University of Science and Technology","ror":"https://ror.org/03n3v6d52","country_code":"CN","type":"education","lineage":["https://openalex.org/I168337820"]},{"id":"https://openalex.org/I50632499","display_name":"Chongqing University of Technology","ror":"https://ror.org/04vgbd477","country_code":"CN","type":"education","lineage":["https://openalex.org/I50632499"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Muhammad\u00a0Wajeeh Us\u00a0Sima","raw_affiliation_strings":["Department of Computer Science and Technology, College of Computer Science, Chongqing University, Chongqing, 400044, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Technology, College of Computer Science, Chongqing University, Chongqing, 400044, China","institution_ids":["https://openalex.org/I168337820","https://openalex.org/I50632499"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022248129","display_name":"Jamshed Ali Shaikh","orcid":"https://orcid.org/0000-0001-6716-4331"},"institutions":[{"id":"https://openalex.org/I168337820","display_name":"Chongqing University of Science and Technology","ror":"https://ror.org/03n3v6d52","country_code":"CN","type":"education","lineage":["https://openalex.org/I168337820"]},{"id":"https://openalex.org/I50632499","display_name":"Chongqing University of Technology","ror":"https://ror.org/04vgbd477","country_code":"CN","type":"education","lineage":["https://openalex.org/I50632499"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jamshed Ali\u00a0Shaikh","raw_affiliation_strings":["Department of Computer Science and Technology, College of Computer Science, Chongqing University, Chongqing, 400044, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Technology, College of Computer Science, Chongqing University, Chongqing, 400044, China","institution_ids":["https://openalex.org/I168337820","https://openalex.org/I50632499"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057488732","display_name":"Hanen Karamti","orcid":"https://orcid.org/0000-0001-5162-2692"},"institutions":[{"id":"https://openalex.org/I106778892","display_name":"Princess Nourah bint Abdulrahman University","ror":"https://ror.org/05b0cyh02","country_code":"SA","type":"education","lineage":["https://openalex.org/I106778892"]}],"countries":["SA"],"is_corresponding":true,"raw_author_name":"Hanen Karamti","raw_affiliation_strings":["Department of Computer Sciences, College of Computer and Information Sciences, Princess Nourah bint Abdulrahman University, Riyadh, P.O. Box 84428, 11671, Saudi Arabia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Sciences, College of Computer and Information Sciences, Princess Nourah bint Abdulrahman University, Riyadh, P.O. Box 84428, 11671, Saudi Arabia","institution_ids":["https://openalex.org/I106778892"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068099666","display_name":"Raed Alharthi","orcid":"https://orcid.org/0000-0001-6182-7923"},"institutions":[{"id":"https://openalex.org/I4210112337","display_name":"University of Hafr Al-Batin","ror":"https://ror.org/021jt1927","country_code":"SA","type":"education","lineage":["https://openalex.org/I4210112337"]}],"countries":["SA"],"is_corresponding":true,"raw_author_name":"Raed Alharthi","raw_affiliation_strings":["Department of Computer Science and Engineering, University of Hafr Al-Batin, Anderson, 39524, Saudi Arabia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of Hafr Al-Batin, Anderson, 39524, Saudi Arabia","institution_ids":["https://openalex.org/I4210112337"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5119136098","display_name":"Julius Selecky","orcid":null},"institutions":[{"id":"https://openalex.org/I74788687","display_name":"Comenius University Bratislava","ror":"https://ror.org/0587ef340","country_code":"SK","type":"education","lineage":["https://openalex.org/I74788687"]}],"countries":["SK"],"is_corresponding":true,"raw_author_name":"Julius Selecky","raw_affiliation_strings":["Department of Information Management and Business Systems, Comenius University Bratislava, Odbojarov, 10, 82005 Bratislava 25, Slovakia. Julius.Selecky@fm.uniba.sk"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Information Management and Business Systems, Comenius University Bratislava, Odbojarov, 10, 82005 Bratislava 25, Slovakia. Julius.Selecky@fm.uniba.sk","institution_ids":["https://openalex.org/I74788687"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5017046956","https://openalex.org/A5057488732","https://openalex.org/A5068099666","https://openalex.org/A5072170618","https://openalex.org/A5119136098"],"corresponding_institution_ids":["https://openalex.org/I106778892","https://openalex.org/I168337820","https://openalex.org/I4210112337","https://openalex.org/I50632499","https://openalex.org/I74788687"],"apc_list":{"value":2690,"currency":"USD","value_usd":2690},"apc_paid":{"value":2690,"currency":"USD","value_usd":2690},"fwci":5.5225,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.96412206,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"18","issue":"1","first_page":"49","last_page":"49"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10124","display_name":"Prostate Cancer Diagnosis and Treatment","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10124","display_name":"Prostate Cancer Diagnosis and Treatment","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10036","display_name":"Advanced Neural Network Applications","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12422","display_name":"Radiomics and Machine Learning in Medical Imaging","score":0.986299991607666,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.7433447241783142},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6489409804344177},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5773343443870544},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.47674429416656494},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.34073513746261597}],"concepts":[{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.7433447241783142},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6489409804344177},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5773343443870544},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.47674429416656494},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.34073513746261597}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/s13040-025-00467-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13040-025-00467-4","pdf_url":"https://link.springer.com/content/pdf/10.1186/s13040-025-00467-4.pdf","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},{"id":"pmid:40734181","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40734181","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData mining","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:12309236","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12309236","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BioData Min","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:371cf78268624ac2985aa8e2b167ec81","is_oa":true,"landing_page_url":"https://doaj.org/article/371cf78268624ac2985aa8e2b167ec81","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BioData Mining, Vol 18, Iss 1, Pp 1-49 (2025)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s13040-025-00467-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13040-025-00467-4","pdf_url":"https://link.springer.com/content/pdf/10.1186/s13040-025-00467-4.pdf","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2303859403","display_name":null,"funder_award_id":"PNURSP2025R508","funder_id":"https://openalex.org/F4320337220","funder_display_name":"Deanship of Scientific Research, Princess Nourah Bint Abdulrahman University"},{"id":"https://openalex.org/G6063645514","display_name":null,"funder_award_id":"PNURSP2025R","funder_id":"https://openalex.org/F4320322484","funder_display_name":"Princess Nourah Bint Abdulrahman University"}],"funders":[{"id":"https://openalex.org/F4320322484","display_name":"Princess Nourah Bint Abdulrahman University","ror":"https://ror.org/05b0cyh02"},{"id":"https://openalex.org/F4320337220","display_name":"Deanship of Scientific Research, Princess Nourah Bint Abdulrahman University","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4412785943.pdf","grobid_xml":"https://content.openalex.org/works/W4412785943.grobid-xml"},"referenced_works_count":23,"referenced_works":["https://openalex.org/W1827911007","https://openalex.org/W1901129140","https://openalex.org/W2026616100","https://openalex.org/W2083927153","https://openalex.org/W2922071185","https://openalex.org/W2937483840","https://openalex.org/W2955132006","https://openalex.org/W2962681100","https://openalex.org/W3048161633","https://openalex.org/W3186622029","https://openalex.org/W4311863322","https://openalex.org/W4386076325","https://openalex.org/W4402445510","https://openalex.org/W4403906028","https://openalex.org/W4405953542","https://openalex.org/W4406104496","https://openalex.org/W4406238568","https://openalex.org/W4407164754","https://openalex.org/W4407736595","https://openalex.org/W4408503531","https://openalex.org/W4408575883","https://openalex.org/W4409265257","https://openalex.org/W6739901393"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2033914206","https://openalex.org/W2042327336"],"abstract_inverted_index":{"Accurate":[0],"segmentation":[1,21,110,170],"of":[2,17,38,136,142,148,155],"the":[3,14,36,91],"prostate":[4,18,228],"peripheral":[5],"zone":[6],"(PZ)":[7],"in":[8,44,193,202],"T2-weighted":[9],"MRI":[10,63,88],"is":[11],"critical":[12],"for":[13,226],"early":[15,227],"detection":[16,230],"cancer.":[19],"Existing":[20],"methods":[22],"are":[23],"hindered":[24],"by":[25,172,181],"significant":[26],"inter-observer":[27,179],"variability":[28],"(37.4":[29],"\u00b1":[30],"5.6%),":[31],"poor":[32],"boundary":[33],"localization,":[34],"and":[35,69,127,153,165,177,199,235],"presence":[37],"motion":[39],"artifacts,":[40],"along":[41],"with":[42,62,116],"challenges":[43],"clinical":[45,72,113],"integration.":[46],"In":[47],"this":[48],"study,":[49],"we":[50],"propose":[51],"BioAug-Net,":[52],"a":[53,70,79,98,104,123,132,190,222],"novel":[54],"framework":[55],"that":[56,219],"integrates":[57],"real-time":[58],"physiological":[59,233],"signal":[60],"feedback":[61],"data,":[64],"leveraging":[65],"transformer-based":[66],"attention":[67,82],"mechanisms":[68],"probabilistic":[71],"decision":[73],"support":[74],"system":[75],"(PCDSS).":[76],"BioAug-Net":[77,121,220],"features":[78],"dual-branch":[80],"asymmetric":[81],"mechanism:":[83],"one":[84],"branch":[85],"processes":[86],"spatial":[87],"features,":[89],"while":[90],"other":[92],"incorporates":[93],"temporal":[94],"sensor":[95],"signals":[96],"through":[97,231],"BiGRU-driven":[99],"adaptive":[100],"masking":[101],"module.":[102],"Additionally,":[103],"Markov":[105],"Decision":[106],"Process-based":[107],"PCDSS":[108],"maps":[109],"outputs":[111],"to":[112,209],"PI-RADS":[114],"scores,":[115],"uncertainty":[117],"quantification.":[118],"We":[119],"validated":[120],"on":[122],"multi-institutional":[124],"dataset":[125],"(n=1,542)":[126],"demonstrated":[128],"state-of-the-art":[129],"performance,":[130],"achieving":[131],"Dice":[133],"Similarity":[134],"Coefficient":[135],"89.7%":[137],"(p":[138,144,150,158,174,183,196,213],"<":[139,145,151,159,175,184],"0.001),":[140,146,152,160],"sensitivity":[141],"91.2%":[143],"specificity":[147],"88.4%":[149],"HD95":[154],"2.14":[156],"mm":[157],"outperforming":[161],"U-Net,":[162,164],"Attention":[163],"TransUNet.":[166],"Sensor":[167],"integration":[168],"improved":[169],"accuracy":[171],"12.6%":[173],"0.001)":[176],"reduced":[178],"variation":[180],"48.3%":[182],"0.001).":[185,215],"Radiologist":[186],"evaluations":[187],"(n=3)":[188],"confirmed":[189],"15.0%":[191],"reduction":[192],"diagnosis":[194],"time":[195],"=":[197,207,211,214],"0.003)":[198],"an":[200],"increase":[201],"inter-reader":[203],"agreement":[204],"from":[205],"K":[206,210],"0.68":[208],"0.82":[212],"Our":[216],"results":[217],"show":[218],"offers":[221],"clinically":[223],"viable":[224],"solution":[225],"cancer":[229],"enhanced":[232],"coupling":[234],"explainable":[236],"AI":[237],"diagnostics.":[238]},"counts_by_year":[{"year":2026,"cited_by_count":7},{"year":2025,"cited_by_count":1}],"updated_date":"2026-08-24T07:32:12.397491","created_date":"2025-10-10T00:00:00"}
