{"id":"https://openalex.org/W4408150421","doi":"https://doi.org/10.1186/s13040-025-00436-x","title":"EnSCAN: ENsemble Scoring for prioritizing CAusative variaNts across multiplatform GWASs for late-onset alzheimer\u2019s disease","display_name":"EnSCAN: ENsemble Scoring for prioritizing CAusative variaNts across multiplatform GWASs for late-onset alzheimer\u2019s disease","publication_year":2025,"publication_date":"2025-03-04","ids":{"openalex":"https://openalex.org/W4408150421","doi":"https://doi.org/10.1186/s13040-025-00436-x","pmid":"https://pubmed.ncbi.nlm.nih.gov/40038746"},"language":"en","primary_location":{"id":"doi:10.1186/s13040-025-00436-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13040-025-00436-x","pdf_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/s13040-025-00436-x","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/s13040-025-00436-x","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101575123","display_name":"Onur Erdo\u011fan","orcid":"https://orcid.org/0000-0002-6171-3042"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Onur Erdogan","raw_affiliation_strings":["Department of Health Informatics, Graduate School of Informatics, METU, Ankara, 06800, T\u00fcrkiye"],"affiliations":[{"raw_affiliation_string":"Department of Health Informatics, Graduate School of Informatics, METU, Ankara, 06800, T\u00fcrkiye","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023889985","display_name":"Cem \u0130yig\u00fcn","orcid":"https://orcid.org/0000-0002-2845-224X"},"institutions":[{"id":"https://openalex.org/I201799495","display_name":"Middle East Technical University","ror":"https://ror.org/014weej12","country_code":"TR","type":"education","lineage":["https://openalex.org/I201799495"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Cem Iyigun","raw_affiliation_strings":["Department of Industrial Engineering, METU, Ankara, 06800, T\u00fcrkiye"],"affiliations":[{"raw_affiliation_string":"Department of Industrial Engineering, METU, Ankara, 06800, T\u00fcrkiye","institution_ids":["https://openalex.org/I201799495"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5055754523","display_name":"Ye\u015fim Ayd\u0131n Son","orcid":"https://orcid.org/0000-0002-8118-4272"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ye\u015fim Ayd\u0131n Son","raw_affiliation_strings":["Department of Health Informatics, Graduate School of Informatics, METU, Ankara, 06800, T\u00fcrkiye. yesim@metu.edu.tr","Neuroscience and Neurotechnology Center of Excellence, ODT\u00dc-N\u00d6ROM, Ankar, 06560, T\u00fcrkiye. yesim@metu.edu.tr","Department of Health Informatics, Graduate School of Informatics, METU, Ankara, 06800, T\u00fcrkiye"],"affiliations":[{"raw_affiliation_string":"Department of Health Informatics, Graduate School of Informatics, METU, Ankara, 06800, T\u00fcrkiye. yesim@metu.edu.tr","institution_ids":[]},{"raw_affiliation_string":"Neuroscience and Neurotechnology Center of Excellence, ODT\u00dc-N\u00d6ROM, Ankar, 06560, T\u00fcrkiye. yesim@metu.edu.tr","institution_ids":[]},{"raw_affiliation_string":"Department of Health Informatics, Graduate School of Informatics, METU, Ankara, 06800, T\u00fcrkiye","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5101575123"],"corresponding_institution_ids":[],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.03531711,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"18","issue":"1","first_page":"20","last_page":"20"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9890999794006348,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9593999981880188,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6104475259780884},{"id":"https://openalex.org/keywords/causative","display_name":"Causative","score":0.5189573168754578},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.513321578502655},{"id":"https://openalex.org/keywords/early-onset-alzheimers-disease","display_name":"Early-onset Alzheimer's disease","score":0.47797510027885437},{"id":"https://openalex.org/keywords/alzheimers-disease","display_name":"Alzheimer's disease","score":0.2675735354423523},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2585720419883728},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.13569670915603638},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.06978389620780945}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6104475259780884},{"id":"https://openalex.org/C2779374079","wikidata":"https://www.wikidata.org/wiki/Q1737190","display_name":"Causative","level":3,"score":0.5189573168754578},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.513321578502655},{"id":"https://openalex.org/C2781340033","wikidata":"https://www.wikidata.org/wiki/Q5326566","display_name":"Early-onset Alzheimer's disease","level":4,"score":0.47797510027885437},{"id":"https://openalex.org/C502032728","wikidata":"https://www.wikidata.org/wiki/Q11081","display_name":"Alzheimer's disease","level":3,"score":0.2675735354423523},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2585720419883728},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.13569670915603638},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.06978389620780945},{"id":"https://openalex.org/C2776397901","wikidata":"https://www.wikidata.org/wiki/Q24905","display_name":"Verb","level":2,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1186/s13040-025-00436-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13040-025-00436-x","pdf_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/s13040-025-00436-x","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},{"id":"pmid:40038746","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40038746","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData mining","raw_type":null},{"id":"pmh:oai:doaj.org/article:c893729c8e294d508b11e1e1399aa6bc","is_oa":true,"landing_page_url":"https://doaj.org/article/c893729c8e294d508b11e1e1399aa6bc","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BioData Mining, Vol 18, Iss 1, Pp 1-27 (2025)","raw_type":"article"},{"id":"pmh:oai:https://open.metu.edu.tr:11511/114015","is_oa":false,"landing_page_url":"https://hdl.handle.net/11511/114015","pdf_url":null,"source":{"id":"https://openalex.org/S4306402495","display_name":"OpenMETU (Middle East Technical University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I201799495","host_organization_name":"Middle East Technical University","host_organization_lineage":["https://openalex.org/I201799495"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:11881353","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11881353","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BioData Min","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13040-025-00436-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13040-025-00436-x","pdf_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/s13040-025-00436-x","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5,"id":"https://metadata.un.org/sdg/2","display_name":"Zero hunger"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4408150421.pdf"},"referenced_works_count":30,"referenced_works":["https://openalex.org/W1530753532","https://openalex.org/W1539593569","https://openalex.org/W1547709071","https://openalex.org/W1973956579","https://openalex.org/W1978065874","https://openalex.org/W1981409633","https://openalex.org/W2044863747","https://openalex.org/W2137219016","https://openalex.org/W2157395790","https://openalex.org/W2406394474","https://openalex.org/W2591809865","https://openalex.org/W2889571849","https://openalex.org/W2910111050","https://openalex.org/W2950544232","https://openalex.org/W2970328431","https://openalex.org/W3015582604","https://openalex.org/W3025391876","https://openalex.org/W3091886723","https://openalex.org/W3102027041","https://openalex.org/W3111548501","https://openalex.org/W3126561215","https://openalex.org/W3153318641","https://openalex.org/W3198732863","https://openalex.org/W4211204602","https://openalex.org/W4211267005","https://openalex.org/W4220945110","https://openalex.org/W4309306035","https://openalex.org/W4379197028","https://openalex.org/W4391353343","https://openalex.org/W4407816477"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W3018257961","https://openalex.org/W4387867722","https://openalex.org/W2273767287","https://openalex.org/W2551360900","https://openalex.org/W2169848984","https://openalex.org/W2092675546","https://openalex.org/W4394246650"],"abstract_inverted_index":{"Late-onset":[0],"Alzheimer's":[1,41],"disease":[2],"(LOAD)":[3],"is":[4,16,50,215],"a":[5,45,124,145],"progressive":[6],"and":[7,30,91,197,206,217],"complex":[8,46,106],"neurodegenerative":[9],"disorder":[10],"of":[11,24,27,68,184],"the":[12,66,102,120,141,169,181,193,229],"aging":[13],"population.":[14],"LOAD":[15,240],"characterized":[17],"by":[18,167,186],"cognitive":[19,32],"decline,":[20],"such":[21],"as":[22],"deterioration":[23],"memory,":[25],"loss":[26],"intellectual":[28],"abilities,":[29],"other":[31],"domains":[33],"resulting":[34],"from":[35,153,173],"due":[36],"to":[37,100,131,148,156,188,203,221,239],"traumatic":[38],"brain":[39],"injuries.":[40],"Disease":[42],"(AD)":[43],"presents":[44],"genetic":[47,103,107],"etiology":[48],"that":[49],"still":[51],"unclear,":[52],"which":[53,161],"limits":[54],"its":[55],"early":[56],"or":[57],"differential":[58],"diagnosis.":[59],"The":[60,176,212],"Genome-Wide":[61],"Association":[62],"Studies":[63],"(GWAS)":[64],"enable":[65],"exploration":[67],"individual":[69],"variants'":[70],"statistical":[71],"interactions":[72,80,97],"at":[73],"candidate":[74,158,207,235],"loci,":[75,160],"but":[76],"univariate":[77],"analysis":[78],"overlooks":[79],"between":[81,98,195],"variants.":[82],"Machine":[83],"learning":[84],"(ML)":[85],"algorithms":[86],"can":[87,218],"capture":[88],"hidden,":[89],"novel,":[90],"significant":[92,133],"patterns":[93],"while":[94],"considering":[95],"nonlinear":[96],"variants":[99,151,237],"understand":[101],"predisposition":[104],"for":[105,210],"disorders.":[108],"When":[109],"working":[110],"on":[111],"different":[112,154],"platforms,":[113],"majority":[114],"voting":[115],"cannot":[116],"be":[117,219],"applied":[118,220],"because":[119],"attributes":[121],"differ.":[122],"Hence,":[123],"new":[125,146],"post-ML":[126],"ensemble":[127,149,178],"approach":[128],"was":[129],"developed":[130],"select":[132],"SNVs":[134,185,205],"via":[135],"multiple":[136],"genotyping":[137,224],"platforms.":[138],"We":[139,226],"proposed":[140,177,230],"EnSCAN":[142,231],"framework":[143],"using":[144],"algorithm":[147,179,233],"selected":[150],"even":[152],"platforms":[155],"prioritize":[157,204],"causative":[159,208,236],"consequently":[162],"helps":[163],"improve":[164],"ML":[165],"results":[166],"combining":[168],"prior":[170],"information":[171],"captured":[172],"each":[174],"dataset.":[175],"utilizes":[180],"chromosomal":[182],"locations":[183],"mapping":[187],"cytogenetic":[189],"bands,":[190],"along":[191],"with":[192],"proximities":[194],"pairs":[196],"multimodel":[198],"Random":[199],"Forest":[200],"(RF)":[201],"validations":[202],"genes":[209],"LOAD.":[211],"scoring":[213,232],"method":[214],"scalable":[216],"any":[222],"multiplatform":[223],"study.":[225],"present":[227],"how":[228],"prioritizes":[234],"related":[238],"among":[241],"three":[242],"GWAS":[243],"datasets.":[244]},"counts_by_year":[],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
