{"id":"https://openalex.org/W4405855303","doi":"https://doi.org/10.1186/s13040-024-00413-w","title":"Distinct network patterns emerge from Cartesian and XOR epistasis models: a comparative network science analysis","display_name":"Distinct network patterns emerge from Cartesian and XOR epistasis models: a comparative network science analysis","publication_year":2024,"publication_date":"2024-12-28","ids":{"openalex":"https://openalex.org/W4405855303","doi":"https://doi.org/10.1186/s13040-024-00413-w","pmid":"https://pubmed.ncbi.nlm.nih.gov/39732697"},"language":"en","primary_location":{"id":"doi:10.1186/s13040-024-00413-w","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13040-024-00413-w","pdf_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/s13040-024-00413-w","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/s13040-024-00413-w","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5049536418","display_name":"Zhendong Sha","orcid":"https://orcid.org/0000-0002-7694-1099"},"institutions":[{"id":"https://openalex.org/I204722609","display_name":"Queen's University","ror":"https://ror.org/02y72wh86","country_code":"CA","type":"education","lineage":["https://openalex.org/I204722609"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Zhendong Sha","raw_affiliation_strings":["School of Computing, Queen's University, 557 Goodwin Hall, 21-25 Union St, Kingston, K7L 2N8, Ontario, Canada"],"affiliations":[{"raw_affiliation_string":"School of Computing, Queen's University, 557 Goodwin Hall, 21-25 Union St, Kingston, K7L 2N8, Ontario, Canada","institution_ids":["https://openalex.org/I204722609"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049025538","display_name":"Philip J. Freda","orcid":"https://orcid.org/0000-0001-8658-9802"},"institutions":[{"id":"https://openalex.org/I1282927834","display_name":"Cedars-Sinai Medical Center","ror":"https://ror.org/02pammg90","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1282927834"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Philip J. Freda","raw_affiliation_strings":["Department of Computational Biomedicine, Cedars-Sinai Medical Center, 700 N. San Vicente Blvd., Pacific Design Center, Suite G540, West Hollywood, 90069, CA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computational Biomedicine, Cedars-Sinai Medical Center, 700 N. San Vicente Blvd., Pacific Design Center, Suite G540, West Hollywood, 90069, CA, USA","institution_ids":["https://openalex.org/I1282927834"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084570095","display_name":"Priyanka Bhandary","orcid":"https://orcid.org/0000-0002-6962-9638"},"institutions":[{"id":"https://openalex.org/I1282927834","display_name":"Cedars-Sinai Medical Center","ror":"https://ror.org/02pammg90","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1282927834"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Priyanka Bhandary","raw_affiliation_strings":["Department of Computational Biomedicine, Cedars-Sinai Medical Center, 700 N. San Vicente Blvd., Pacific Design Center, Suite G540, West Hollywood, 90069, CA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computational Biomedicine, Cedars-Sinai Medical Center, 700 N. San Vicente Blvd., Pacific Design Center, Suite G540, West Hollywood, 90069, CA, USA","institution_ids":["https://openalex.org/I1282927834"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025125590","display_name":"Attri Ghosh","orcid":null},"institutions":[{"id":"https://openalex.org/I1282927834","display_name":"Cedars-Sinai Medical Center","ror":"https://ror.org/02pammg90","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1282927834"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Attri Ghosh","raw_affiliation_strings":["Department of Computational Biomedicine, Cedars-Sinai Medical Center, 700 N. San Vicente Blvd., Pacific Design Center, Suite G540, West Hollywood, 90069, CA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computational Biomedicine, Cedars-Sinai Medical Center, 700 N. San Vicente Blvd., Pacific Design Center, Suite G540, West Hollywood, 90069, CA, USA","institution_ids":["https://openalex.org/I1282927834"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054144186","display_name":"Nicholas Matsumoto","orcid":"https://orcid.org/0000-0002-3280-9678"},"institutions":[{"id":"https://openalex.org/I1282927834","display_name":"Cedars-Sinai Medical Center","ror":"https://ror.org/02pammg90","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1282927834"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nicholas Matsumoto","raw_affiliation_strings":["Department of Computational Biomedicine, Cedars-Sinai Medical Center, 700 N. San Vicente Blvd., Pacific Design Center, Suite G540, West Hollywood, 90069, CA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computational Biomedicine, Cedars-Sinai Medical Center, 700 N. San Vicente Blvd., Pacific Design Center, Suite G540, West Hollywood, 90069, CA, USA","institution_ids":["https://openalex.org/I1282927834"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032971510","display_name":"Jason H. Moore","orcid":"https://orcid.org/0000-0002-5015-1099"},"institutions":[{"id":"https://openalex.org/I1282927834","display_name":"Cedars-Sinai Medical Center","ror":"https://ror.org/02pammg90","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1282927834"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jason H. Moore","raw_affiliation_strings":["Department of Computational Biomedicine, Cedars-Sinai Medical Center, 700 N. San Vicente Blvd., Pacific Design Center, Suite G540, West Hollywood, 90069, CA, USA. jason.moore@csmc.edu","Department of Computational Biomedicine, Cedars-Sinai Medical Center, 700 N. San Vicente Blvd., Pacific Design Center, Suite G540, West Hollywood, 90069, CA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computational Biomedicine, Cedars-Sinai Medical Center, 700 N. San Vicente Blvd., Pacific Design Center, Suite G540, West Hollywood, 90069, CA, USA. jason.moore@csmc.edu","institution_ids":["https://openalex.org/I1282927834"]},{"raw_affiliation_string":"Department of Computational Biomedicine, Cedars-Sinai Medical Center, 700 N. San Vicente Blvd., Pacific Design Center, Suite G540, West Hollywood, 90069, CA, USA","institution_ids":["https://openalex.org/I1282927834"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5075046931","display_name":"Ting Hu","orcid":"https://orcid.org/0000-0001-6382-0602"},"institutions":[{"id":"https://openalex.org/I204722609","display_name":"Queen's University","ror":"https://ror.org/02y72wh86","country_code":"CA","type":"education","lineage":["https://openalex.org/I204722609"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Ting Hu","raw_affiliation_strings":["School of Computing, Queen's University, 557 Goodwin Hall, 21-25 Union St, Kingston, K7L 2N8, Ontario, Canada. ting.hu@queensu.ca","School of Computing, Queen's University, 557 Goodwin Hall, 21-25 Union St, Kingston, K7L 2N8, Ontario, Canada"],"affiliations":[{"raw_affiliation_string":"School of Computing, Queen's University, 557 Goodwin Hall, 21-25 Union St, Kingston, K7L 2N8, Ontario, Canada. ting.hu@queensu.ca","institution_ids":["https://openalex.org/I204722609"]},{"raw_affiliation_string":"School of Computing, Queen's University, 557 Goodwin Hall, 21-25 Union St, Kingston, K7L 2N8, Ontario, Canada","institution_ids":["https://openalex.org/I204722609"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5049536418"],"corresponding_institution_ids":["https://openalex.org/I204722609"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.2385,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.60532134,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":"17","issue":"1","first_page":"61","last_page":"61"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13283","display_name":"Mental Health Research Topics","score":0.9886999726295471,"subfield":{"id":"https://openalex.org/subfields/3205","display_name":"Experimental and Cognitive Psychology"},"field":{"id":"https://openalex.org/fields/32","display_name":"Psychology"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9812999963760376,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/epistasis","display_name":"Epistasis","score":0.9589475393295288},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5053468346595764},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4482354521751404},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.43247461318969727},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.23805475234985352}],"concepts":[{"id":"https://openalex.org/C61727976","wikidata":"https://www.wikidata.org/wiki/Q751748","display_name":"Epistasis","level":3,"score":0.9589475393295288},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5053468346595764},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4482354521751404},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.43247461318969727},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.23805475234985352}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/s13040-024-00413-w","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13040-024-00413-w","pdf_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/s13040-024-00413-w","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},{"id":"pmid:39732697","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39732697","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData mining","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11681696","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11681696","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11681696/pdf/13040_2024_Article_413.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BioData Min","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:7377c011a9624a7d98b7b2419a676bae","is_oa":true,"landing_page_url":"https://doaj.org/article/7377c011a9624a7d98b7b2419a676bae","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BioData Mining, Vol 17, Iss 1, Pp 1-31 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s13040-024-00413-w","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13040-024-00413-w","pdf_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/s13040-024-00413-w","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4706438170","display_name":null,"funder_award_id":"R01 LM010098","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320331257","display_name":"Alliance de recherche num\u00e9rique du Canada","ror":"https://ror.org/010r6td27"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4405855303.pdf"},"referenced_works_count":80,"referenced_works":["https://openalex.org/W1496676716","https://openalex.org/W1524662923","https://openalex.org/W1570272764","https://openalex.org/W1966360257","https://openalex.org/W1973247012","https://openalex.org/W1973316176","https://openalex.org/W1978966909","https://openalex.org/W1981723690","https://openalex.org/W1996226986","https://openalex.org/W1997744129","https://openalex.org/W2005452204","https://openalex.org/W2007669896","https://openalex.org/W2012852001","https://openalex.org/W2018045523","https://openalex.org/W2018934112","https://openalex.org/W2030628077","https://openalex.org/W2035300844","https://openalex.org/W2040847667","https://openalex.org/W2047940964","https://openalex.org/W2056782561","https://openalex.org/W2061232867","https://openalex.org/W2062533676","https://openalex.org/W2085812964","https://openalex.org/W2089885047","https://openalex.org/W2099468911","https://openalex.org/W2104108767","https://openalex.org/W2112090702","https://openalex.org/W2116341502","https://openalex.org/W2119314929","https://openalex.org/W2130790725","https://openalex.org/W2130856032","https://openalex.org/W2131681506","https://openalex.org/W2138487969","https://openalex.org/W2140886368","https://openalex.org/W2151936673","https://openalex.org/W2153624566","https://openalex.org/W2154572047","https://openalex.org/W2159074139","https://openalex.org/W2159675211","https://openalex.org/W2161653752","https://openalex.org/W2163480486","https://openalex.org/W2163841023","https://openalex.org/W2169702025","https://openalex.org/W2171373235","https://openalex.org/W2173689381","https://openalex.org/W2316819486","https://openalex.org/W2325325200","https://openalex.org/W2335429725","https://openalex.org/W2461732257","https://openalex.org/W2548120468","https://openalex.org/W2826750344","https://openalex.org/W2886585140","https://openalex.org/W2887433896","https://openalex.org/W2897249806","https://openalex.org/W2910111050","https://openalex.org/W2915985519","https://openalex.org/W2931562287","https://openalex.org/W2944545583","https://openalex.org/W2952893067","https://openalex.org/W2998634487","https://openalex.org/W3037439015","https://openalex.org/W3045058852","https://openalex.org/W3082963240","https://openalex.org/W3099768174","https://openalex.org/W3104824402","https://openalex.org/W3106188259","https://openalex.org/W3125573404","https://openalex.org/W3158609166","https://openalex.org/W4210554436","https://openalex.org/W4220661592","https://openalex.org/W4220930003","https://openalex.org/W4238448376","https://openalex.org/W4280597994","https://openalex.org/W4289861187","https://openalex.org/W4309452769","https://openalex.org/W4309668437","https://openalex.org/W4388430487","https://openalex.org/W4392237190","https://openalex.org/W4393336917","https://openalex.org/W4396664738"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W2013243191","https://openalex.org/W1971568933"],"abstract_inverted_index":{"Collectively,":[0],"these":[1],"findings":[2],"highlight":[3],"the":[4],"XOR":[5],"model's":[6],"ability":[7],"to":[8],"uncover":[9],"meaningful":[10],"biological":[11],"associations":[12],"and":[13,27,42],"higher-order":[14],"epistasis":[15,40],"derived":[16],"from":[17],"lower-order":[18],"network":[19,32],"topologies.":[20],"The":[21],"introduction":[22],"of":[23],"community-based":[24],"enrichment":[25],"analysis":[26],"motif-based":[28],"epistatic":[29],"discovery":[30],"emphasize":[31],"science":[33],"as":[34],"a":[35],"critical":[36],"approach":[37],"for":[38],"advancing":[39],"research":[41],"understanding":[43],"complex":[44],"genetic":[45],"architectures.":[46]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
