{"id":"https://openalex.org/W4403046120","doi":"https://doi.org/10.1186/s13040-024-00390-0","title":"Assessing the limitations of relief-based algorithms in detecting higher-order interactions","display_name":"Assessing the limitations of relief-based algorithms in detecting higher-order interactions","publication_year":2024,"publication_date":"2024-10-01","ids":{"openalex":"https://openalex.org/W4403046120","doi":"https://doi.org/10.1186/s13040-024-00390-0","pmid":"https://pubmed.ncbi.nlm.nih.gov/39354639"},"language":"en","primary_location":{"id":"doi:10.1186/s13040-024-00390-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13040-024-00390-0","pdf_url":"https://link.springer.com/content/pdf/10.1186/s13040-024-00390-0.pdf","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://link.springer.com/content/pdf/10.1186/s13040-024-00390-0.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5049025538","display_name":"Philip J. Freda","orcid":"https://orcid.org/0000-0001-8658-9802"},"institutions":[{"id":"https://openalex.org/I1282927834","display_name":"Cedars-Sinai Medical Center","ror":"https://ror.org/02pammg90","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1282927834"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Philip J. Freda","raw_affiliation_strings":["Computational Biomedicine, Cedars-Sinai Medical Center, 700 N. San Vicente Blvd., Pacific Design Center, Suite G540, West Hollywood, 90069, CA, USA"],"affiliations":[{"raw_affiliation_string":"Computational Biomedicine, Cedars-Sinai Medical Center, 700 N. San Vicente Blvd., Pacific Design Center, Suite G540, West Hollywood, 90069, CA, USA","institution_ids":["https://openalex.org/I1282927834"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100509939","display_name":"S. Ye","orcid":null},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Suyu Ye","raw_affiliation_strings":["Whiting School of Engineering, Johns Hopkins University, 3400 N. Charles St., Baltimore, 21218, MD, USA"],"affiliations":[{"raw_affiliation_string":"Whiting School of Engineering, Johns Hopkins University, 3400 N. Charles St., Baltimore, 21218, MD, USA","institution_ids":["https://openalex.org/I145311948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069484796","display_name":"Robert Zhang","orcid":"https://orcid.org/0000-0002-7946-6094"},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Robert Zhang","raw_affiliation_strings":["University of Pennsylvania, Philadelphia, 19104, PA, USA"],"affiliations":[{"raw_affiliation_string":"University of Pennsylvania, Philadelphia, 19104, PA, USA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032971510","display_name":"Jason H. Moore","orcid":"https://orcid.org/0000-0002-5015-1099"},"institutions":[{"id":"https://openalex.org/I1282927834","display_name":"Cedars-Sinai Medical Center","ror":"https://ror.org/02pammg90","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1282927834"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jason H. Moore","raw_affiliation_strings":["Computational Biomedicine, Cedars-Sinai Medical Center, 700 N. San Vicente Blvd., Pacific Design Center, Suite G540, West Hollywood, 90069, CA, USA"],"affiliations":[{"raw_affiliation_string":"Computational Biomedicine, Cedars-Sinai Medical Center, 700 N. San Vicente Blvd., Pacific Design Center, Suite G540, West Hollywood, 90069, CA, USA","institution_ids":["https://openalex.org/I1282927834"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5023718023","display_name":"Ryan J. Urbanowicz","orcid":"https://orcid.org/0000-0002-0487-5555"},"institutions":[{"id":"https://openalex.org/I1282927834","display_name":"Cedars-Sinai Medical Center","ror":"https://ror.org/02pammg90","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1282927834"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ryan J. Urbanowicz","raw_affiliation_strings":["Computational Biomedicine, Cedars-Sinai Medical Center, 700 N. San Vicente Blvd., Pacific Design Center, Suite G540, West Hollywood, 90069, CA, USA. ryan.urbanowicz@cshs.org"],"affiliations":[{"raw_affiliation_string":"Computational Biomedicine, Cedars-Sinai Medical Center, 700 N. San Vicente Blvd., Pacific Design Center, Suite G540, West Hollywood, 90069, CA, USA. ryan.urbanowicz@cshs.org","institution_ids":["https://openalex.org/I1282927834"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5049025538"],"corresponding_institution_ids":["https://openalex.org/I1282927834"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":2.6951,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.90508467,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":98},"biblio":{"volume":"17","issue":"1","first_page":"37","last_page":"37"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10594","display_name":"Genetic and phenotypic traits in livestock","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10594","display_name":"Genetic and phenotypic traits in livestock","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/epistasis","display_name":"Epistasis","score":0.8347207903862},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5552253723144531},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.40590792894363403},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3266012668609619},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3247494399547577},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.23770931363105774},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.14418676495552063},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.0955842137336731}],"concepts":[{"id":"https://openalex.org/C61727976","wikidata":"https://www.wikidata.org/wiki/Q751748","display_name":"Epistasis","level":3,"score":0.8347207903862},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5552253723144531},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.40590792894363403},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3266012668609619},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3247494399547577},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.23770931363105774},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.14418676495552063},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0955842137336731}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/s13040-024-00390-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13040-024-00390-0","pdf_url":"https://link.springer.com/content/pdf/10.1186/s13040-024-00390-0.pdf","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},{"id":"pmid:39354639","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39354639","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData mining","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11443793","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11443793","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11443793/pdf/13040_2024_Article_390.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BioData Min","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:3e269f6418444f46afe4eff93ada82a9","is_oa":true,"landing_page_url":"https://doaj.org/article/3e269f6418444f46afe4eff93ada82a9","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BioData Mining, Vol 17, Iss 1, Pp 1-18 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s13040-024-00390-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13040-024-00390-0","pdf_url":"https://link.springer.com/content/pdf/10.1186/s13040-024-00390-0.pdf","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2727763985","display_name":null,"funder_award_id":"AI173095","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2866775907","display_name":null,"funder_award_id":"AG066833","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3285212391","display_name":null,"funder_award_id":"R01 AG066833","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3821698972","display_name":null,"funder_award_id":"R01 AI173095","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4706438170","display_name":null,"funder_award_id":"R01 LM010098","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6682602594","display_name":null,"funder_award_id":"LM010098","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4403046120.pdf","grobid_xml":"https://content.openalex.org/works/W4403046120.grobid-xml"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W190437827","https://openalex.org/W996251949","https://openalex.org/W1500895378","https://openalex.org/W1532551225","https://openalex.org/W1545302199","https://openalex.org/W1583700199","https://openalex.org/W1808644423","https://openalex.org/W1966360257","https://openalex.org/W1997744129","https://openalex.org/W2007669896","https://openalex.org/W2067328319","https://openalex.org/W2083944388","https://openalex.org/W2094122519","https://openalex.org/W2099085143","https://openalex.org/W2104579579","https://openalex.org/W2104902006","https://openalex.org/W2107014760","https://openalex.org/W2109907479","https://openalex.org/W2114917617","https://openalex.org/W2119531572","https://openalex.org/W2126964466","https://openalex.org/W2154572047","https://openalex.org/W2163968639","https://openalex.org/W2170133641","https://openalex.org/W2548120468","https://openalex.org/W2795896985","https://openalex.org/W2944540884","https://openalex.org/W2964278775","https://openalex.org/W2970487695","https://openalex.org/W3104824402","https://openalex.org/W3165264321","https://openalex.org/W3169968581","https://openalex.org/W3191903009","https://openalex.org/W4205516256","https://openalex.org/W4220930003","https://openalex.org/W4220966385","https://openalex.org/W4382631452","https://openalex.org/W4387704148","https://openalex.org/W4392237190","https://openalex.org/W4394933305","https://openalex.org/W6632702340","https://openalex.org/W6675354045"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4306674287","https://openalex.org/W3046775127","https://openalex.org/W3107602296","https://openalex.org/W4394896187","https://openalex.org/W3170094116","https://openalex.org/W4386462264","https://openalex.org/W4364306694","https://openalex.org/W4312192474","https://openalex.org/W4283697347"],"abstract_inverted_index":{"These":[0],"results":[1],"highlight":[2],"the":[3,11,14,24],"inherent":[4],"limitations":[5],"of":[6,16,26],"current":[7],"RBAs":[8],"and":[9,35],"underscore":[10],"need":[12],"for":[13,23],"development":[15],"Relief-based":[17],"approaches":[18],"with":[19,31],"enhanced":[20],"detection":[21],"capabilities":[22],"investigation":[25],"epistasis,":[27],"particularly":[28],"in":[29],"datasets":[30],"large":[32],"feature":[33],"counts":[34],"complex":[36],"higher-order":[37],"interactions.":[38]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":4}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
