{"id":"https://openalex.org/W4402411761","doi":"https://doi.org/10.1186/s13040-024-00388-8","title":"Knowledge-slanted random forest method for high-dimensional data and small sample size with a feature selection application for gene expression data","display_name":"Knowledge-slanted random forest method for high-dimensional data and small sample size with a feature selection application for gene expression data","publication_year":2024,"publication_date":"2024-09-10","ids":{"openalex":"https://openalex.org/W4402411761","doi":"https://doi.org/10.1186/s13040-024-00388-8","pmid":"https://pubmed.ncbi.nlm.nih.gov/39256872"},"language":"en","primary_location":{"id":"doi:10.1186/s13040-024-00388-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13040-024-00388-8","pdf_url":"https://link.springer.com/content/pdf/10.1186/s13040-024-00388-8.pdf","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://link.springer.com/content/pdf/10.1186/s13040-024-00388-8.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5013376132","display_name":"\u00c9rika Cantor","orcid":"https://orcid.org/0000-0003-3320-6032"},"institutions":[{"id":"https://openalex.org/I233745408","display_name":"Pontificia Universidad Javeriana","ror":"https://ror.org/03etyjw28","country_code":"CO","type":"education","lineage":["https://openalex.org/I233745408"]}],"countries":["CO"],"is_corresponding":true,"raw_author_name":"Erika Cantor","raw_affiliation_strings":["Department of clinical epidemiology and biostatistics, Pontificia Universidad Javeriana, Bogot\u00e1, 110221, Colombia. erika.cantor@javeriana.edu.co"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of clinical epidemiology and biostatistics, Pontificia Universidad Javeriana, Bogot\u00e1, 110221, Colombia. erika.cantor@javeriana.edu.co","institution_ids":["https://openalex.org/I233745408"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009588914","display_name":"Sandra Guauque-Olarte","orcid":"https://orcid.org/0000-0003-0336-9682"},"institutions":[{"id":"https://openalex.org/I36243813","display_name":"Universidad Nacional de Colombia","ror":"https://ror.org/059yx9a68","country_code":"CO","type":"education","lineage":["https://openalex.org/I36243813"]}],"countries":["CO"],"is_corresponding":false,"raw_author_name":"Sandra Guauque-Olarte","raw_affiliation_strings":["Department of basic sciences and oral medicine, Universidad Nacional de Colombia, Bogot\u00e1, 16486, Colombia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of basic sciences and oral medicine, Universidad Nacional de Colombia, Bogot\u00e1, 16486, Colombia","institution_ids":["https://openalex.org/I36243813"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036621828","display_name":"Roberto Le\u00f3n","orcid":"https://orcid.org/0000-0002-7164-1783"},"institutions":[{"id":"https://openalex.org/I75778554","display_name":"Federico Santa Mar\u00eda Technical University","ror":"https://ror.org/05510vn56","country_code":"CL","type":"education","lineage":["https://openalex.org/I75778554"]}],"countries":["CL"],"is_corresponding":false,"raw_author_name":"Roberto Le\u00f3n","raw_affiliation_strings":["Department of Computer Science, Universidad T\u00e9cnica Federico Santa Mar\u00eda, Santiago de Chile, 8940897, Chile"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Universidad T\u00e9cnica Federico Santa Mar\u00eda, Santiago de Chile, 8940897, Chile","institution_ids":["https://openalex.org/I75778554"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062863951","display_name":"St\u00e9ren Chabert","orcid":"https://orcid.org/0000-0002-2890-5077"},"institutions":[{"id":"https://openalex.org/I2802531901","display_name":"Millennium Science Initiative","ror":"https://ror.org/01c080z51","country_code":"CL","type":"government","lineage":["https://openalex.org/I2802531901"]},{"id":"https://openalex.org/I79274474","display_name":"University of Valpara\u00edso","ror":"https://ror.org/00h9jrb69","country_code":"CL","type":"education","lineage":["https://openalex.org/I79274474"]}],"countries":["CL"],"is_corresponding":false,"raw_author_name":"Steren Chabert","raw_affiliation_strings":["Center of Interdisciplinary Biomedical and Engineering Research for Health - MEDING, Universidad de Valparaiso, Valpara\u00edso, 2360102, Chile","Millennium Science Initiative Intelligent Healthcare Engineering, Santiago de Chile, 7820436, Chile","School of Biomedical Engineering, Universidad de Valparaiso, Valpara\u00edso, 2360102, Chile"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center of Interdisciplinary Biomedical and Engineering Research for Health - MEDING, Universidad de Valparaiso, Valpara\u00edso, 2360102, Chile","institution_ids":["https://openalex.org/I79274474"]},{"raw_affiliation_string":"Millennium Science Initiative Intelligent Healthcare Engineering, Santiago de Chile, 7820436, Chile","institution_ids":["https://openalex.org/I2802531901"]},{"raw_affiliation_string":"School of Biomedical Engineering, Universidad de Valparaiso, Valpara\u00edso, 2360102, Chile","institution_ids":["https://openalex.org/I79274474"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5088560375","display_name":"Rodrigo Salas","orcid":"https://orcid.org/0000-0002-0350-6811"},"institutions":[{"id":"https://openalex.org/I2802531901","display_name":"Millennium Science Initiative","ror":"https://ror.org/01c080z51","country_code":"CL","type":"government","lineage":["https://openalex.org/I2802531901"]},{"id":"https://openalex.org/I79274474","display_name":"University of Valpara\u00edso","ror":"https://ror.org/00h9jrb69","country_code":"CL","type":"education","lineage":["https://openalex.org/I79274474"]}],"countries":["CL"],"is_corresponding":false,"raw_author_name":"Rodrigo Salas","raw_affiliation_strings":["Center of Interdisciplinary Biomedical and Engineering Research for Health - MEDING, Universidad de Valparaiso, Valpara\u00edso, 2360102, Chile","Millennium Science Initiative Intelligent Healthcare Engineering, Santiago de Chile, 7820436, Chile","School of Biomedical Engineering, Universidad de Valparaiso, Valpara\u00edso, 2360102, Chile"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center of Interdisciplinary Biomedical and Engineering Research for Health - MEDING, Universidad de Valparaiso, Valpara\u00edso, 2360102, Chile","institution_ids":["https://openalex.org/I79274474"]},{"raw_affiliation_string":"Millennium Science Initiative Intelligent Healthcare Engineering, Santiago de Chile, 7820436, Chile","institution_ids":["https://openalex.org/I2802531901"]},{"raw_affiliation_string":"School of Biomedical Engineering, Universidad de Valparaiso, Valpara\u00edso, 2360102, Chile","institution_ids":["https://openalex.org/I79274474"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5013376132"],"corresponding_institution_ids":["https://openalex.org/I233745408"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":3.0992,"has_fulltext":true,"cited_by_count":14,"citation_normalized_percentile":{"value":0.92237064,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"17","issue":"1","first_page":"34","last_page":"34"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11975","display_name":"Evolutionary Algorithms and Applications","score":0.9921000003814697,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10320","display_name":"Neural Networks and Applications","score":0.9905999898910522,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/random-forest","display_name":"Random forest","score":0.7713881731033325},{"id":"https://openalex.org/keywords/feature-selection","display_name":"Feature selection","score":0.7174126505851746},{"id":"https://openalex.org/keywords/sample-size-determination","display_name":"Sample size determination","score":0.6328132748603821},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.622580349445343},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5707449316978455},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.5625393390655518},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.536354660987854},{"id":"https://openalex.org/keywords/sample","display_name":"Sample (material)","score":0.477704793214798},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.4458516240119934},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.3927764296531677},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.318545401096344},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.22754964232444763},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.09342944622039795}],"concepts":[{"id":"https://openalex.org/C169258074","wikidata":"https://www.wikidata.org/wiki/Q245748","display_name":"Random forest","level":2,"score":0.7713881731033325},{"id":"https://openalex.org/C148483581","wikidata":"https://www.wikidata.org/wiki/Q446488","display_name":"Feature selection","level":2,"score":0.7174126505851746},{"id":"https://openalex.org/C129848803","wikidata":"https://www.wikidata.org/wiki/Q2564360","display_name":"Sample size determination","level":2,"score":0.6328132748603821},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.622580349445343},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5707449316978455},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.5625393390655518},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.536354660987854},{"id":"https://openalex.org/C198531522","wikidata":"https://www.wikidata.org/wiki/Q485146","display_name":"Sample (material)","level":2,"score":0.477704793214798},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.4458516240119934},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.3927764296531677},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.318545401096344},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.22754964232444763},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.09342944622039795},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C97355855","wikidata":"https://www.wikidata.org/wiki/Q11473","display_name":"Thermodynamics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/s13040-024-00388-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13040-024-00388-8","pdf_url":"https://link.springer.com/content/pdf/10.1186/s13040-024-00388-8.pdf","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},{"id":"pmid:39256872","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39256872","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData mining","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11389072","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11389072","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11389072/pdf/13040_2024_Article_388.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BioData Min","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:972d507c1ab24d65864c10a91e6f6f4c","is_oa":true,"landing_page_url":"https://doaj.org/article/972d507c1ab24d65864c10a91e6f6f4c","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BioData Mining, Vol 17, Iss 1, Pp 1-17 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s13040-024-00388-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13040-024-00388-8","pdf_url":"https://link.springer.com/content/pdf/10.1186/s13040-024-00388-8.pdf","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5462527714","display_name":null,"funder_award_id":"ICN2021_004","funder_id":"https://openalex.org/F4320319253","funder_display_name":"Agen\u021bia Na\u021bional\u0103 pentru Cercetare \u0219i Dezvoltare"},{"id":"https://openalex.org/G5936009186","display_name":null,"funder_award_id":"ICN2021_004","funder_id":"https://openalex.org/F4320331146","funder_display_name":"Agencia Nacional de Investigaci\u00f3n y Desarrollo"},{"id":"https://openalex.org/G6788420604","display_name":null,"funder_award_id":"1231268","funder_id":"https://openalex.org/F4320331146","funder_display_name":"Agencia Nacional de Investigaci\u00f3n y Desarrollo"},{"id":"https://openalex.org/G7476626057","display_name":null,"funder_award_id":"1221938","funder_id":"https://openalex.org/F4320331146","funder_display_name":"Agencia Nacional de Investigaci\u00f3n y Desarrollo"}],"funders":[{"id":"https://openalex.org/F4320317176","display_name":"Institut Catal\u00e0 de Nanoci\u00e8ncia i Nanotecnologia","ror":"https://ror.org/00k1qja49"},{"id":"https://openalex.org/F4320319253","display_name":"Agen\u021bia Na\u021bional\u0103 pentru Cercetare \u0219i Dezvoltare","ror":null},{"id":"https://openalex.org/F4320331146","display_name":"Agencia Nacional de Investigaci\u00f3n y Desarrollo","ror":null},{"id":"https://openalex.org/F4320338463","display_name":"CHIST-ERA","ror":"https://ror.org/00rbzpz17"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4402411761.pdf"},"referenced_works_count":39,"referenced_works":["https://openalex.org/W1587510588","https://openalex.org/W1590047728","https://openalex.org/W1596515083","https://openalex.org/W1875061881","https://openalex.org/W1985785080","https://openalex.org/W1992187094","https://openalex.org/W2022604714","https://openalex.org/W2034926402","https://openalex.org/W2074549773","https://openalex.org/W2096173332","https://openalex.org/W2104806243","https://openalex.org/W2119220491","https://openalex.org/W2144327682","https://openalex.org/W2156665896","https://openalex.org/W2157395790","https://openalex.org/W2496929102","https://openalex.org/W2766438525","https://openalex.org/W2802643674","https://openalex.org/W2887015436","https://openalex.org/W2911964244","https://openalex.org/W2937762029","https://openalex.org/W2944954104","https://openalex.org/W2951936974","https://openalex.org/W2952304433","https://openalex.org/W2963997030","https://openalex.org/W2973941913","https://openalex.org/W2982894044","https://openalex.org/W3000045279","https://openalex.org/W3025125480","https://openalex.org/W3034152715","https://openalex.org/W3102027041","https://openalex.org/W3121452939","https://openalex.org/W3133824676","https://openalex.org/W3168219035","https://openalex.org/W3171520305","https://openalex.org/W4220803452","https://openalex.org/W4283399166","https://openalex.org/W4297710664","https://openalex.org/W4366453607"],"related_works":["https://openalex.org/W3193043704","https://openalex.org/W4386259002","https://openalex.org/W4388745254","https://openalex.org/W2980082554","https://openalex.org/W1517228774","https://openalex.org/W2767419625","https://openalex.org/W2389704471","https://openalex.org/W2117019857","https://openalex.org/W4386564352","https://openalex.org/W2952668426"],"abstract_inverted_index":{"comparing":[0],"knowledge-slanted":[1,23,41],"RF":[2,5,24,42],"against":[3],"conventional":[4,57],"and":[6],"logistic":[7],"lasso":[8],"regression,":[9],"suggest":[10],"an":[11],"improved":[12],"precision":[13],"in":[14,63],"outcome":[15],"prediction":[16],"compared":[17],"to":[18,67,71],"the":[19,28,35],"other":[20],"methods.":[21],"The":[22],"was":[25],"completed":[26],"with":[27],"introduction":[29],"of":[30,34,52],"a":[31,49],"modified":[32],"version":[33],"Boruta":[36],"feature":[37],"selection":[38],"algorithm.":[39],"Finally,":[40],"identified":[43],"more":[44],"relevant":[45,69],"biological":[46],"genes,":[47],"offering":[48],"higher":[50],"level":[51],"explainability":[53],"for":[54],"users":[55],"than":[56],"RF.":[58],"These":[59],"findings":[60],"were":[61],"corroborated":[62],"one":[64],"real":[65],"case":[66],"identify":[68],"genes":[70],"calcific":[72],"aortic":[73],"valve":[74],"stenosis.":[75]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":8}],"updated_date":"2026-04-28T14:05:53.105641","created_date":"2025-10-10T00:00:00"}
