{"id":"https://openalex.org/W4401915201","doi":"https://doi.org/10.1186/s13040-024-00382-0","title":"Integrating transcriptomics and proteomics to analyze the immune microenvironment of cytomegalovirus associated ulcerative colitis and identify relevant biomarkers","display_name":"Integrating transcriptomics and proteomics to analyze the immune microenvironment of cytomegalovirus associated ulcerative colitis and identify relevant biomarkers","publication_year":2024,"publication_date":"2024-08-27","ids":{"openalex":"https://openalex.org/W4401915201","doi":"https://doi.org/10.1186/s13040-024-00382-0","pmid":"https://pubmed.ncbi.nlm.nih.gov/39192288"},"language":"en","primary_location":{"id":"doi:10.1186/s13040-024-00382-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13040-024-00382-0","pdf_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/s13040-024-00382-0","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/s13040-024-00382-0","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100350382","display_name":"Yang Chen","orcid":"https://orcid.org/0000-0001-9406-8273"},"institutions":[{"id":"https://openalex.org/I10660446","display_name":"Kunming University of Science and Technology","ror":"https://ror.org/00xyeez13","country_code":"CN","type":"education","lineage":["https://openalex.org/I10660446"]},{"id":"https://openalex.org/I4210091044","display_name":"First People's Hospital of Yunnan Province","ror":"https://ror.org/00c099g34","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210091044"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yang Chen","raw_affiliation_strings":["Department of Pathology, The Affiliated Hospital of Kunming University of Science and Technology, Kunming, Yunnan, 650032, China","Department of Pathology, The First People's Hospital of Yunnan Province, Kunming, Yunnan, 650032, China","Yunnan Provincial Laboratory of Clinical Virology, The First People's Hospital of Yunnan Province, Kunming, Yunnan, 650032, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pathology, The Affiliated Hospital of Kunming University of Science and Technology, Kunming, Yunnan, 650032, China","institution_ids":["https://openalex.org/I10660446"]},{"raw_affiliation_string":"Department of Pathology, The First People's Hospital of Yunnan Province, Kunming, Yunnan, 650032, China","institution_ids":["https://openalex.org/I4210091044"]},{"raw_affiliation_string":"Yunnan Provincial Laboratory of Clinical Virology, The First People's Hospital of Yunnan Province, Kunming, Yunnan, 650032, China","institution_ids":["https://openalex.org/I4210091044"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022441060","display_name":"Qingqing Zheng","orcid":"https://orcid.org/0000-0001-7726-1901"},"institutions":[{"id":"https://openalex.org/I10660446","display_name":"Kunming University of Science and Technology","ror":"https://ror.org/00xyeez13","country_code":"CN","type":"education","lineage":["https://openalex.org/I10660446"]},{"id":"https://openalex.org/I4210091044","display_name":"First People's Hospital of Yunnan Province","ror":"https://ror.org/00c099g34","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210091044"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qingqing Zheng","raw_affiliation_strings":["Department of Pathology, The Affiliated Hospital of Kunming University of Science and Technology, Kunming, Yunnan, 650032, China","Department of Pathology, The First People's Hospital of Yunnan Province, Kunming, Yunnan, 650032, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pathology, The Affiliated Hospital of Kunming University of Science and Technology, Kunming, Yunnan, 650032, China","institution_ids":["https://openalex.org/I10660446"]},{"raw_affiliation_string":"Department of Pathology, The First People's Hospital of Yunnan Province, Kunming, Yunnan, 650032, China","institution_ids":["https://openalex.org/I4210091044"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115694940","display_name":"Hui Wang","orcid":"https://orcid.org/0009-0006-3512-9308"},"institutions":[{"id":"https://openalex.org/I10660446","display_name":"Kunming University of Science and Technology","ror":"https://ror.org/00xyeez13","country_code":"CN","type":"education","lineage":["https://openalex.org/I10660446"]},{"id":"https://openalex.org/I4210091044","display_name":"First People's Hospital of Yunnan Province","ror":"https://ror.org/00c099g34","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210091044"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hui Wang","raw_affiliation_strings":["Department of Pathology, The Affiliated Hospital of Kunming University of Science and Technology, Kunming, Yunnan, 650032, China","Department of Pathology, The First People's Hospital of Yunnan Province, Kunming, Yunnan, 650032, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pathology, The Affiliated Hospital of Kunming University of Science and Technology, Kunming, Yunnan, 650032, China","institution_ids":["https://openalex.org/I10660446"]},{"raw_affiliation_string":"Department of Pathology, The First People's Hospital of Yunnan Province, Kunming, Yunnan, 650032, China","institution_ids":["https://openalex.org/I4210091044"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108975107","display_name":"Peiren Tang","orcid":null},"institutions":[{"id":"https://openalex.org/I10660446","display_name":"Kunming University of Science and Technology","ror":"https://ror.org/00xyeez13","country_code":"CN","type":"education","lineage":["https://openalex.org/I10660446"]},{"id":"https://openalex.org/I4210091044","display_name":"First People's Hospital of Yunnan Province","ror":"https://ror.org/00c099g34","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210091044"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Peiren Tang","raw_affiliation_strings":["Department of Pathology, The Affiliated Hospital of Kunming University of Science and Technology, Kunming, Yunnan, 650032, China","Department of Pathology, The First People's Hospital of Yunnan Province, Kunming, Yunnan, 650032, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pathology, The Affiliated Hospital of Kunming University of Science and Technology, Kunming, Yunnan, 650032, China","institution_ids":["https://openalex.org/I10660446"]},{"raw_affiliation_string":"Department of Pathology, The First People's Hospital of Yunnan Province, Kunming, Yunnan, 650032, China","institution_ids":["https://openalex.org/I4210091044"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103008156","display_name":"Li Deng","orcid":"https://orcid.org/0000-0003-1638-1867"},"institutions":[{"id":"https://openalex.org/I10660446","display_name":"Kunming University of Science and Technology","ror":"https://ror.org/00xyeez13","country_code":"CN","type":"education","lineage":["https://openalex.org/I10660446"]},{"id":"https://openalex.org/I4210091044","display_name":"First People's Hospital of Yunnan Province","ror":"https://ror.org/00c099g34","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210091044"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Li Deng","raw_affiliation_strings":["Department of Pathology, The Affiliated Hospital of Kunming University of Science and Technology, Kunming, Yunnan, 650032, China","Department of Pathology, The First People's Hospital of Yunnan Province, Kunming, Yunnan, 650032, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pathology, The Affiliated Hospital of Kunming University of Science and Technology, Kunming, Yunnan, 650032, China","institution_ids":["https://openalex.org/I10660446"]},{"raw_affiliation_string":"Department of Pathology, The First People's Hospital of Yunnan Province, Kunming, Yunnan, 650032, China","institution_ids":["https://openalex.org/I4210091044"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100457984","display_name":"Pu Li","orcid":"https://orcid.org/0000-0002-5981-4119"},"institutions":[{"id":"https://openalex.org/I4210091044","display_name":"First People's Hospital of Yunnan Province","ror":"https://ror.org/00c099g34","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210091044"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Pu Li","raw_affiliation_strings":["Department of General Practice, The First People's Hospital of Yunnan Province, Kunming, Yunnan, 650032, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of General Practice, The First People's Hospital of Yunnan Province, Kunming, Yunnan, 650032, China","institution_ids":["https://openalex.org/I4210091044"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008099794","display_name":"Huan Li","orcid":"https://orcid.org/0009-0006-6328-708X"},"institutions":[{"id":"https://openalex.org/I10660446","display_name":"Kunming University of Science and Technology","ror":"https://ror.org/00xyeez13","country_code":"CN","type":"education","lineage":["https://openalex.org/I10660446"]},{"id":"https://openalex.org/I4210091044","display_name":"First People's Hospital of Yunnan Province","ror":"https://ror.org/00c099g34","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210091044"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Huan Li","raw_affiliation_strings":["Department of Pathology, The Affiliated Hospital of Kunming University of Science and Technology, Kunming, Yunnan, 650032, China","Department of Pathology, The First People's Hospital of Yunnan Province, Kunming, Yunnan, 650032, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pathology, The Affiliated Hospital of Kunming University of Science and Technology, Kunming, Yunnan, 650032, China","institution_ids":["https://openalex.org/I10660446"]},{"raw_affiliation_string":"Department of Pathology, The First People's Hospital of Yunnan Province, Kunming, Yunnan, 650032, China","institution_ids":["https://openalex.org/I4210091044"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111303223","display_name":"Jianhong Hou","orcid":null},"institutions":[{"id":"https://openalex.org/I4210091044","display_name":"First People's Hospital of Yunnan Province","ror":"https://ror.org/00c099g34","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210091044"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jianhong Hou","raw_affiliation_strings":["Department of Surgery, The First People's Hospital of Yunnan Province, Kunming, Yunnan, 650032, China. hjh@kust.edu.cn","Department of Surgery, The First People's Hospital of Yunnan Province, Kunming, Yunnan, 650032, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Surgery, The First People's Hospital of Yunnan Province, Kunming, Yunnan, 650032, China. hjh@kust.edu.cn","institution_ids":["https://openalex.org/I4210091044"]},{"raw_affiliation_string":"Department of Surgery, The First People's Hospital of Yunnan Province, Kunming, Yunnan, 650032, China","institution_ids":["https://openalex.org/I4210091044"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039808795","display_name":"Jie Li","orcid":"https://orcid.org/0000-0002-6912-3346"},"institutions":[{"id":"https://openalex.org/I26080491","display_name":"Kunming Medical University","ror":"https://ror.org/038c3w259","country_code":"CN","type":"education","lineage":["https://openalex.org/I26080491"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jie Li","raw_affiliation_strings":["Academy of Biomedical Engineering, Kunming Medical University, Kunming, Yunnan, 650500, China. lijie@kmmu.edu.cn","Academy of Biomedical Engineering, Kunming Medical University, Kunming, Yunnan, 650500, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Academy of Biomedical Engineering, Kunming Medical University, Kunming, Yunnan, 650500, China. lijie@kmmu.edu.cn","institution_ids":["https://openalex.org/I26080491"]},{"raw_affiliation_string":"Academy of Biomedical Engineering, Kunming Medical University, Kunming, Yunnan, 650500, China","institution_ids":["https://openalex.org/I26080491"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115695478","display_name":"Li Wang","orcid":"https://orcid.org/0000-0002-0496-9500"},"institutions":[{"id":"https://openalex.org/I10660446","display_name":"Kunming University of Science and Technology","ror":"https://ror.org/00xyeez13","country_code":"CN","type":"education","lineage":["https://openalex.org/I10660446"]},{"id":"https://openalex.org/I4210091044","display_name":"First People's Hospital of Yunnan Province","ror":"https://ror.org/00c099g34","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210091044"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Li Wang","raw_affiliation_strings":["Department of Pathology, The Affiliated Hospital of Kunming University of Science and Technology, Kunming, Yunnan, 650032, China. 2001WL@163.com","Department of Pathology, The First People's Hospital of Yunnan Province, Kunming, Yunnan, 650032, China. 2001WL@163.com","Department of Pathology, The Affiliated Hospital of Kunming University of Science and Technology, Kunming, Yunnan, 650032, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pathology, The Affiliated Hospital of Kunming University of Science and Technology, Kunming, Yunnan, 650032, China. 2001WL@163.com","institution_ids":["https://openalex.org/I10660446"]},{"raw_affiliation_string":"Department of Pathology, The First People's Hospital of Yunnan Province, Kunming, Yunnan, 650032, China. 2001WL@163.com","institution_ids":["https://openalex.org/I4210091044"]},{"raw_affiliation_string":"Department of Pathology, The Affiliated Hospital of Kunming University of Science and Technology, Kunming, Yunnan, 650032, China","institution_ids":["https://openalex.org/I10660446"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5085172671","display_name":"Jun Peng","orcid":"https://orcid.org/0000-0002-5935-7501"},"institutions":[{"id":"https://openalex.org/I4210091044","display_name":"First People's Hospital of Yunnan Province","ror":"https://ror.org/00c099g34","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210091044"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jun Peng","raw_affiliation_strings":["Department of Surgery, The First People's Hospital of Yunnan Province, Kunming, Yunnan, 650032, China. 9y140211@kust.edu.cn","Department of Surgery, The First People's Hospital of Yunnan Province, Kunming, Yunnan, 650032, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Surgery, The First People's Hospital of Yunnan Province, Kunming, Yunnan, 650032, China. 9y140211@kust.edu.cn","institution_ids":["https://openalex.org/I4210091044"]},{"raw_affiliation_string":"Department of Surgery, The First People's Hospital of Yunnan Province, Kunming, Yunnan, 650032, China","institution_ids":["https://openalex.org/I4210091044"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5039808795"],"corresponding_institution_ids":["https://openalex.org/I26080491"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.8406,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.86257859,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"17","issue":"1","first_page":"26","last_page":"26"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10981","display_name":"Cytomegalovirus and herpesvirus research","score":0.8367000222206116,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10981","display_name":"Cytomegalovirus and herpesvirus research","score":0.8367000222206116,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.06069999933242798,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10134","display_name":"Inflammatory Bowel Disease","score":0.02019999921321869,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.7141555547714233},{"id":"https://openalex.org/keywords/ulcerative-colitis","display_name":"Ulcerative colitis","score":0.6548610925674438},{"id":"https://openalex.org/keywords/immune-system","display_name":"Immune system","score":0.5280265212059021},{"id":"https://openalex.org/keywords/cytomegalovirus","display_name":"Cytomegalovirus","score":0.527838945388794},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.525706946849823},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.4461570084095001},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3875121772289276},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3846954107284546},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.3509625792503357},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.3366992175579071},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3072335720062256},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.20027494430541992},{"id":"https://openalex.org/keywords/virus","display_name":"Virus","score":0.15488064289093018},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.12753155827522278},{"id":"https://openalex.org/keywords/viral-disease","display_name":"Viral disease","score":0.10434308648109436},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09362763166427612},{"id":"https://openalex.org/keywords/herpesviridae","display_name":"Herpesviridae","score":0.08241406083106995},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08025738596916199}],"concepts":[{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.7141555547714233},{"id":"https://openalex.org/C2780479503","wikidata":"https://www.wikidata.org/wiki/Q1477","display_name":"Ulcerative colitis","level":3,"score":0.6548610925674438},{"id":"https://openalex.org/C8891405","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune system","level":2,"score":0.5280265212059021},{"id":"https://openalex.org/C2777732132","wikidata":"https://www.wikidata.org/wiki/Q6946","display_name":"Cytomegalovirus","level":5,"score":0.527838945388794},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.525706946849823},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.4461570084095001},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3875121772289276},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3846954107284546},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.3509625792503357},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.3366992175579071},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3072335720062256},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.20027494430541992},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.15488064289093018},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.12753155827522278},{"id":"https://openalex.org/C2780727368","wikidata":"https://www.wikidata.org/wiki/Q1928978","display_name":"Viral disease","level":3,"score":0.10434308648109436},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09362763166427612},{"id":"https://openalex.org/C2776409557","wikidata":"https://www.wikidata.org/wiki/Q149348","display_name":"Herpesviridae","level":4,"score":0.08241406083106995},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08025738596916199},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/s13040-024-00382-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13040-024-00382-0","pdf_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/s13040-024-00382-0","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},{"id":"pmid:39192288","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39192288","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData mining","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11348729","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11348729","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11348729/pdf/13040_2024_Article_382.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BioData Min","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:e7802f4df0c74bebadc0f7b4d577667c","is_oa":true,"landing_page_url":"https://doaj.org/article/e7802f4df0c74bebadc0f7b4d577667c","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BioData Mining, Vol 17, Iss 1, Pp 1-17 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s13040-024-00382-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13040-024-00382-0","pdf_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/s13040-024-00382-0","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/2","score":0.6200000047683716,"display_name":"Zero hunger"}],"awards":[{"id":"https://openalex.org/G8804457910","display_name":null,"funder_award_id":"202402AA310016","funder_id":"https://openalex.org/F4320336602","funder_display_name":"Major Science and Technology Projects in Yunnan Province"}],"funders":[{"id":"https://openalex.org/F4320336602","display_name":"Major Science and Technology Projects in Yunnan Province","ror":null}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4401915201.pdf"},"referenced_works_count":44,"referenced_works":["https://openalex.org/W1545617022","https://openalex.org/W1997987714","https://openalex.org/W2019574543","https://openalex.org/W2026110361","https://openalex.org/W2039978643","https://openalex.org/W2046470781","https://openalex.org/W2059834480","https://openalex.org/W2061832459","https://openalex.org/W2072821461","https://openalex.org/W2075170026","https://openalex.org/W2075542920","https://openalex.org/W2076107861","https://openalex.org/W2095017644","https://openalex.org/W2105780745","https://openalex.org/W2127539559","https://openalex.org/W2136666117","https://openalex.org/W2145456746","https://openalex.org/W2182578492","https://openalex.org/W2184945322","https://openalex.org/W2323234383","https://openalex.org/W2407934684","https://openalex.org/W2488270343","https://openalex.org/W2553713911","https://openalex.org/W2756947021","https://openalex.org/W2889972155","https://openalex.org/W2919081348","https://openalex.org/W2964277243","https://openalex.org/W2975213891","https://openalex.org/W2975453406","https://openalex.org/W3000627633","https://openalex.org/W3009064668","https://openalex.org/W3010174329","https://openalex.org/W3096916946","https://openalex.org/W3114337463","https://openalex.org/W3134095023","https://openalex.org/W3137785750","https://openalex.org/W4206899367","https://openalex.org/W4210631519","https://openalex.org/W4281699705","https://openalex.org/W4282983619","https://openalex.org/W4289201244","https://openalex.org/W4291597098","https://openalex.org/W4323812764","https://openalex.org/W4378652842"],"related_works":["https://openalex.org/W2378399001","https://openalex.org/W2381376498","https://openalex.org/W2393318770","https://openalex.org/W2369056725","https://openalex.org/W4385147599","https://openalex.org/W3151390891","https://openalex.org/W2391150797","https://openalex.org/W4224234790","https://openalex.org/W2363553858","https://openalex.org/W2363311716"],"abstract_inverted_index":{"BACKGROUND:":[0],"In":[1,140],"recent":[2],"years,":[3],"significant":[4,271],"morbidity":[5],"and":[6,16,36,60,104,119,146,161,184,203,236,257],"mortality":[7],"in":[8,29,39,64,168,228,276],"patients":[9,35,53,68,153,261],"with":[10,54,200],"severe":[11],"inflammatory":[12],"bowel":[13],"disease":[14,40],"(IBD)":[15],"cytomegalovirus":[17],"(CMV)":[18],"have":[19,69],"drawn":[20],"considerable":[21],"attention":[22],"to":[23,71,95,123,134,154,196],"the":[24,30,61,82,97,136,229,255,274,277],"status":[25],"of":[26,33,85,213,232,259],"CMV":[27,55,65,86,150,169,233,242,282],"infection":[28,56],"intestinal":[31],"mucosa":[32],"IBD":[34,260],"its":[37],"role":[38],"progression.":[41],"However,":[42],"there":[43],"is":[44],"currently":[45],"no":[46],"high-throughput":[47],"sequencing":[48,148],"data":[49],"for":[50,80,241,254,272],"ulcerative":[51],"colitis":[52],"(CMV":[57],"+":[58,66,87,151,170,234,243],"UC),":[59],"immune":[62,83,102,158,166,230,279],"microenvironment":[63,84,159,231,280],"UC":[67,88,152,171,235],"yet":[70],"be":[72,270],"explored.":[73],"METHOD:":[74],"The":[75],"xCell":[76],"algorithm":[77],"was":[78,93,132],"used":[79,122],"evaluate":[81],"patients.":[89],"Then,":[90],"WGCNA":[91],"analysis":[92],"explored":[94],"obtain":[96],"co-expression":[98,181,186],"modules":[99,183],"between":[100],"abnormal":[101,165],"cells":[103,167],"gene":[105,182],"level":[106],"or":[107],"protein":[108,187],"level.":[109],"Next,":[110],"three":[111],"machine":[112,193],"learning":[113,194],"approach":[114],"include":[115],"Random":[116],"Forest,":[117],"SVM-rfe,":[118],"Lasso":[120],"were":[121],"filter":[124],"candidate":[125],"biomarkers.":[126],"Finally,":[127],"Best":[128],"Subset":[129],"Selection":[130],"algorithms":[131,195],"performed":[133,144],"construct":[135],"diagnostic":[137,201,207,239],"model.":[138,208],"RESULTS:":[139],"this":[141,267],"study,":[142],"we":[143,178,190],"transcriptomic":[145],"proteomic":[147],"on":[149],"establish":[155],"a":[156,211,251],"comprehensive":[157],"profile":[160],"found":[162],"11":[163],"specific":[164],"group.":[172],"After":[173],"using":[174],"multi-omics":[175],"integration":[176],"algorithms,":[177],"identified":[179,210],"seven":[180],"five":[185],"modules.":[188],"Subsequently,":[189],"utilized":[191],"various":[192],"identify":[197],"key":[198],"biomarkers":[199,215,248],"efficacy":[202],"constructed":[204],"an":[205],"early":[206],"We":[209],"total":[212],"eight":[214],"(PPP1R12B,":[216],"CIRBP,":[217],"CSNK2A2,":[218],"DNAJB11,":[219],"PIK3R4,":[220],"RRBP1,":[221],"STX5,":[222],"TMEM214)":[223],"that":[224],"play":[225],"crucial":[226],"roles":[227],"exhibit":[237],"superior":[238],"performance":[240],"UC.":[244],"CONCLUSION:":[245],"This":[246],"8":[247],"model":[249,268],"offers":[250],"new":[252],"paradigm":[253],"diagnosis":[256],"treatment":[258],"post-CMV":[262],"infection.":[263,283],"Further":[264],"research":[265],"into":[266],"will":[269],"understanding":[273],"changes":[275],"host":[278],"following":[281]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":3}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
