{"id":"https://openalex.org/W4400583716","doi":"https://doi.org/10.1186/s13040-024-00373-1","title":"Building RadiologyNET: an unsupervised approach to annotating a large-scale multimodal medical database","display_name":"Building RadiologyNET: an unsupervised approach to annotating a large-scale multimodal medical database","publication_year":2024,"publication_date":"2024-07-12","ids":{"openalex":"https://openalex.org/W4400583716","doi":"https://doi.org/10.1186/s13040-024-00373-1","pmid":"https://pubmed.ncbi.nlm.nih.gov/38997749"},"language":"en","primary_location":{"id":"doi:10.1186/s13040-024-00373-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13040-024-00373-1","pdf_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/s13040-024-00373-1","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/s13040-024-00373-1","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5062433563","display_name":"Mateja Napravnik","orcid":"https://orcid.org/0000-0002-3271-3342"},"institutions":[{"id":"https://openalex.org/I154347574","display_name":"University of Rijeka","ror":"https://ror.org/05r8dqr10","country_code":"HR","type":"education","lineage":["https://openalex.org/I154347574"]}],"countries":["HR"],"is_corresponding":true,"raw_author_name":"Mateja Napravnik","raw_affiliation_strings":["Faculty of Engineering, University of Rijeka, Vukovarska 58, Rijeka, 51000, Croatia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Engineering, University of Rijeka, Vukovarska 58, Rijeka, 51000, Croatia","institution_ids":["https://openalex.org/I154347574"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076577917","display_name":"Franko Hr\u017ei\u0107","orcid":"https://orcid.org/0000-0003-1513-0337"},"institutions":[{"id":"https://openalex.org/I154347574","display_name":"University of Rijeka","ror":"https://ror.org/05r8dqr10","country_code":"HR","type":"education","lineage":["https://openalex.org/I154347574"]}],"countries":["HR"],"is_corresponding":false,"raw_author_name":"Franko Hr\u017ei\u0107","raw_affiliation_strings":["Center for Artificial Intelligence and Cybersecurity, Radmile Matejcic 2, Rijeka, 51000, Croatia","Faculty of Engineering, University of Rijeka, Vukovarska 58, Rijeka, 51000, Croatia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Artificial Intelligence and Cybersecurity, Radmile Matejcic 2, Rijeka, 51000, Croatia","institution_ids":["https://openalex.org/I154347574"]},{"raw_affiliation_string":"Faculty of Engineering, University of Rijeka, Vukovarska 58, Rijeka, 51000, Croatia","institution_ids":["https://openalex.org/I154347574"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079962811","display_name":"Sebastian Tschauner","orcid":"https://orcid.org/0000-0002-7873-9839"},"institutions":[{"id":"https://openalex.org/I202276237","display_name":"Medical University of Graz","ror":"https://ror.org/02n0bts35","country_code":"AT","type":"education","lineage":["https://openalex.org/I202276237"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Sebastian Tschauner","raw_affiliation_strings":["Division of Pediatric Radiology, Department of Radiology, Medical University of Graz, Neue Stiftingtalstra\u00dfe 6, Graz, 8010, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Pediatric Radiology, Department of Radiology, Medical University of Graz, Neue Stiftingtalstra\u00dfe 6, Graz, 8010, Austria","institution_ids":["https://openalex.org/I202276237"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5081398821","display_name":"Ivan \u0160tajduhar","orcid":"https://orcid.org/0000-0003-4758-7972"},"institutions":[{"id":"https://openalex.org/I154347574","display_name":"University of Rijeka","ror":"https://ror.org/05r8dqr10","country_code":"HR","type":"education","lineage":["https://openalex.org/I154347574"]}],"countries":["HR"],"is_corresponding":false,"raw_author_name":"Ivan \u0160tajduhar","raw_affiliation_strings":["Center for Artificial Intelligence and Cybersecurity, Radmile Matejcic 2, Rijeka, 51000, Croatia. ivan.stajduhar@uniri.hr","Faculty of Engineering, University of Rijeka, Vukovarska 58, Rijeka, 51000, Croatia. ivan.stajduhar@uniri.hr","Center for Artificial Intelligence and Cybersecurity, Radmile Matejcic 2, Rijeka, 51000, Croatia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Artificial Intelligence and Cybersecurity, Radmile Matejcic 2, Rijeka, 51000, Croatia. ivan.stajduhar@uniri.hr","institution_ids":[]},{"raw_affiliation_string":"Faculty of Engineering, University of Rijeka, Vukovarska 58, Rijeka, 51000, Croatia. ivan.stajduhar@uniri.hr","institution_ids":[]},{"raw_affiliation_string":"Center for Artificial Intelligence and Cybersecurity, Radmile Matejcic 2, Rijeka, 51000, Croatia","institution_ids":["https://openalex.org/I154347574"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5062433563"],"corresponding_institution_ids":["https://openalex.org/I154347574"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":3.1686,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.91948181,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"17","issue":"1","first_page":"22","last_page":"22"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11775","display_name":"COVID-19 diagnosis using AI","score":0.18029999732971191,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11775","display_name":"COVID-19 diagnosis using AI","score":0.18029999732971191,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.16349999606609344,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10824","display_name":"Image Retrieval and Classification Techniques","score":0.09679999947547913,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8162894248962402},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.6165801286697388},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.6091107130050659},{"id":"https://openalex.org/keywords/medical-diagnosis","display_name":"Medical diagnosis","score":0.5890114903450012},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5235502123832703},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.47524452209472656},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.47021153569221497},{"id":"https://openalex.org/keywords/medical-imaging","display_name":"Medical imaging","score":0.46633195877075195},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.45134422183036804},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.45048806071281433},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.33731287717819214},{"id":"https://openalex.org/keywords/radiology","display_name":"Radiology","score":0.10478910803794861}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8162894248962402},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.6165801286697388},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.6091107130050659},{"id":"https://openalex.org/C534262118","wikidata":"https://www.wikidata.org/wiki/Q177719","display_name":"Medical diagnosis","level":2,"score":0.5890114903450012},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5235502123832703},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.47524452209472656},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.47021153569221497},{"id":"https://openalex.org/C31601959","wikidata":"https://www.wikidata.org/wiki/Q931309","display_name":"Medical imaging","level":2,"score":0.46633195877075195},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.45134422183036804},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.45048806071281433},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.33731287717819214},{"id":"https://openalex.org/C126838900","wikidata":"https://www.wikidata.org/wiki/Q77604","display_name":"Radiology","level":1,"score":0.10478910803794861},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/s13040-024-00373-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13040-024-00373-1","pdf_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/s13040-024-00373-1","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},{"id":"pmid:38997749","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38997749","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData mining","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11245804","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11245804","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11245804/pdf/13040_2024_Article_373.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BioData Min","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:8469c6206b934eae8566b5df5cf4872a","is_oa":true,"landing_page_url":"https://doaj.org/article/8469c6206b934eae8566b5df5cf4872a","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BioData Mining, Vol 17, Iss 1, Pp 1-31 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s13040-024-00373-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13040-024-00373-1","pdf_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/s13040-024-00373-1","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2143379086","display_name":null,"funder_award_id":"IP-2020-02-3770","funder_id":"https://openalex.org/F4320322674","funder_display_name":"Hrvatska Zaklada za Znanost"},{"id":"https://openalex.org/G6462038999","display_name":null,"funder_award_id":"IP-2020-02","funder_id":"https://openalex.org/F4320322674","funder_display_name":"Hrvatska Zaklada za Znanost"}],"funders":[{"id":"https://openalex.org/F4320322674","display_name":"Hrvatska Zaklada za Znanost","ror":"https://ror.org/03n51vw80"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4400583716.pdf"},"referenced_works_count":53,"referenced_works":["https://openalex.org/W1506690472","https://openalex.org/W1901129140","https://openalex.org/W1987474082","https://openalex.org/W1996881001","https://openalex.org/W2057261601","https://openalex.org/W2057947771","https://openalex.org/W2061567202","https://openalex.org/W2064186732","https://openalex.org/W2097749765","https://openalex.org/W2128728535","https://openalex.org/W2148742104","https://openalex.org/W2158703410","https://openalex.org/W2165698076","https://openalex.org/W2271840356","https://openalex.org/W2395579298","https://openalex.org/W2560674852","https://openalex.org/W2581082906","https://openalex.org/W2611726225","https://openalex.org/W2618530766","https://openalex.org/W2728836678","https://openalex.org/W2768707988","https://openalex.org/W2798122215","https://openalex.org/W2803124023","https://openalex.org/W2806341513","https://openalex.org/W2905338897","https://openalex.org/W2937423263","https://openalex.org/W2963466845","https://openalex.org/W2970971581","https://openalex.org/W2971013993","https://openalex.org/W2982424689","https://openalex.org/W3011570378","https://openalex.org/W3014795415","https://openalex.org/W3038033387","https://openalex.org/W3080469858","https://openalex.org/W3102944297","https://openalex.org/W3105625590","https://openalex.org/W3126004537","https://openalex.org/W3135367836","https://openalex.org/W3140854437","https://openalex.org/W3168316785","https://openalex.org/W3170657538","https://openalex.org/W3192277991","https://openalex.org/W4205164650","https://openalex.org/W4226418765","https://openalex.org/W4229666556","https://openalex.org/W4280642293","https://openalex.org/W4313307290","https://openalex.org/W4313307668","https://openalex.org/W4327682244","https://openalex.org/W4365143687","https://openalex.org/W4372331829","https://openalex.org/W4385147142","https://openalex.org/W6778883912"],"related_works":["https://openalex.org/W2058118494","https://openalex.org/W2392768766","https://openalex.org/W2361861616","https://openalex.org/W2382021449","https://openalex.org/W2095118173","https://openalex.org/W2263699433","https://openalex.org/W2106424170","https://openalex.org/W2377979023","https://openalex.org/W1985426483","https://openalex.org/W2501188010"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,102,120,156,180],"use":[2],"of":[3,20,34,68,90,111,145,152,158,187,200,203,231],"machine":[4],"learning":[5],"in":[6,14],"medical":[7,28,69,91,112,147,205,232],"diagnosis":[8,22],"and":[9,49,117,167,176,207,226],"treatment":[10],"has":[11],"grown":[12],"significantly":[13],"recent":[15],"years":[16],"with":[17],"the":[18,32,44,96,159,173,185,194,198,210,218],"development":[19],"computer-aided":[21],"systems,":[23],"often":[24],"based":[25,72],"on":[26,73],"annotated":[27,36,88,229],"radiology":[29,70,92,233],"images.":[30,155,234],"However,":[31],"lack":[33],"large":[35,66,87],"image":[37],"datasets":[38],"remains":[39],"a":[40,65,86,128,142,223],"major":[41],"obstacle,":[42],"as":[43],"annotation":[45],"process":[46],"is":[47,82,104,132,161],"time-consuming":[48],"costly.":[50],"This":[51],"study":[52],"aims":[53],"to":[54,84,135,209],"overcome":[55],"this":[56,215],"challenge":[57],"by":[58,106,163],"proposing":[59],"an":[60,137],"automated":[61,138],"method":[62],"for":[63,140,197],"annotating":[64],"database":[67],"images":[71,93,148],"their":[74,165],"semantic":[75],"similarity.":[76],"RESULTS:":[77],"An":[78],"automated,":[79],"unsupervised":[80,201],"approach":[81],"used":[83],"create":[85,136],"dataset":[89,144,230],"originating":[94],"from":[95],"Clinical":[97],"Hospital":[98],"Centre":[99],"Rijeka,":[100],"Croatia.":[101],"pipeline":[103,139],"built":[105],"data-mining":[107],"three":[108,189],"different":[109],"types":[110],"data:":[113],"images,":[114],"DICOM":[115],"metadata":[116],"narrative":[118],"diagnoses.":[119],"optimal":[121],"feature":[122],"extractors":[123],"are":[124],"then":[125,133],"integrated":[126],"into":[127,149,171],"multimodal":[129],"representation,":[130],"which":[131],"clustered":[134],"labelling":[141],"precursor":[143],"1,337,926":[146],"50":[150],"clusters":[151,160],"visually":[153],"similar":[154],"quality":[157],"assessed":[162],"examining":[164],"homogeneity":[166],"mutual":[168],"information,":[169],"taking":[170],"account":[172],"anatomical":[174],"region":[175],"modality":[177],"representation.":[178],"CONCLUSIONS:":[179],"results":[181,196],"indicate":[182],"that":[183],"fusing":[184],"embeddings":[186],"all":[188],"data":[190,206],"sources":[191],"together":[192],"provides":[193],"best":[195],"task":[199],"clustering":[202],"large-scale":[204],"leads":[208],"most":[211],"concise":[212],"clusters.":[213],"Hence,":[214],"work":[216],"marks":[217],"initial":[219],"step":[220],"towards":[221],"building":[222],"much":[224],"larger":[225],"more":[227],"fine-grained":[228]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":2}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
