{"id":"https://openalex.org/W4372331829","doi":"https://doi.org/10.1186/s13040-023-00332-2","title":"Changing word meanings in biomedical literature reveal pandemics and new technologies","display_name":"Changing word meanings in biomedical literature reveal pandemics and new technologies","publication_year":2023,"publication_date":"2023-05-05","ids":{"openalex":"https://openalex.org/W4372331829","doi":"https://doi.org/10.1186/s13040-023-00332-2","pmid":"https://pubmed.ncbi.nlm.nih.gov/37147665"},"language":"en","primary_location":{"id":"doi:10.1186/s13040-023-00332-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13040-023-00332-2","pdf_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/s13040-023-00332-2","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/s13040-023-00332-2","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5085139756","display_name":"David N. Nicholson","orcid":"https://orcid.org/0000-0003-0002-5761"},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"David N. Nicholson","raw_affiliation_strings":["Genomics and Computational Biology Program, University of Pennsylvania, Philadelpia, PA, USA"],"raw_orcid":"https://orcid.org/0000-0003-0002-5761","affiliations":[{"raw_affiliation_string":"Genomics and Computational Biology Program, University of Pennsylvania, Philadelpia, PA, USA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001950261","display_name":"Faisal Alquaddoomi","orcid":"https://orcid.org/0000-0003-4297-8747"},"institutions":[{"id":"https://openalex.org/I151808059","display_name":"Colorado School of Public Health","ror":"https://ror.org/005x9g035","country_code":"US","type":"education","lineage":["https://openalex.org/I151808059"]},{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Faisal Alquaddoomi","raw_affiliation_strings":["Center for Health Artificial Intelligence (CHAI), University of Colorado School of Medicine, Aurora, CO, USA","Department of Biomedical Informatics, University of Colorado School of Medicine, Aurora, CO, USA"],"raw_orcid":"https://orcid.org/0000-0003-4297-8747","affiliations":[{"raw_affiliation_string":"Center for Health Artificial Intelligence (CHAI), University of Colorado School of Medicine, Aurora, CO, USA","institution_ids":["https://openalex.org/I151808059"]},{"raw_affiliation_string":"Department of Biomedical Informatics, University of Colorado School of Medicine, Aurora, CO, USA","institution_ids":["https://openalex.org/I921990950"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082140316","display_name":"Vincent Rubinetti","orcid":"https://orcid.org/0000-0002-4655-3773"},"institutions":[{"id":"https://openalex.org/I151808059","display_name":"Colorado School of Public Health","ror":"https://ror.org/005x9g035","country_code":"US","type":"education","lineage":["https://openalex.org/I151808059"]},{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vincent Rubinetti","raw_affiliation_strings":["Center for Health Artificial Intelligence (CHAI), University of Colorado School of Medicine, Aurora, CO, USA","Department of Biomedical Informatics, University of Colorado School of Medicine, Aurora, CO, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Health Artificial Intelligence (CHAI), University of Colorado School of Medicine, Aurora, CO, USA","institution_ids":["https://openalex.org/I151808059"]},{"raw_affiliation_string":"Department of Biomedical Informatics, University of Colorado School of Medicine, Aurora, CO, USA","institution_ids":["https://openalex.org/I921990950"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5050692257","display_name":"Casey S. Greene","orcid":"https://orcid.org/0000-0001-8713-9213"},"institutions":[{"id":"https://openalex.org/I151808059","display_name":"Colorado School of Public Health","ror":"https://ror.org/005x9g035","country_code":"US","type":"education","lineage":["https://openalex.org/I151808059"]},{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Casey S. Greene","raw_affiliation_strings":["Center for Health Artificial Intelligence (CHAI), University of Colorado School of Medicine, Aurora, CO, USA. casey.s.greene@cuanschutz.edu","Department of Biomedical Informatics, University of Colorado School of Medicine, Aurora, CO, USA. casey.s.greene@cuanschutz.edu"],"raw_orcid":"https://orcid.org/0000-0001-8713-9213","affiliations":[{"raw_affiliation_string":"Center for Health Artificial Intelligence (CHAI), University of Colorado School of Medicine, Aurora, CO, USA. casey.s.greene@cuanschutz.edu","institution_ids":["https://openalex.org/I151808059"]},{"raw_affiliation_string":"Department of Biomedical Informatics, University of Colorado School of Medicine, Aurora, CO, USA. casey.s.greene@cuanschutz.edu","institution_ids":["https://openalex.org/I921990950"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5085139756"],"corresponding_institution_ids":["https://openalex.org/I79576946"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.1264,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.8213147,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":95},"biblio":{"volume":"16","issue":"1","first_page":"16","last_page":"16"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11147","display_name":"Misinformation and Its Impacts","score":0.9940999746322632,"subfield":{"id":"https://openalex.org/subfields/3312","display_name":"Sociology and Political Science"},"field":{"id":"https://openalex.org/fields/33","display_name":"Social Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11147","display_name":"Misinformation and Its Impacts","score":0.9940999746322632,"subfield":{"id":"https://openalex.org/subfields/3312","display_name":"Sociology and Political Science"},"field":{"id":"https://openalex.org/fields/33","display_name":"Social Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T13607","display_name":"Academic Publishing and Open Access","score":0.9344000220298767,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/word","display_name":"Word (group theory)","score":0.6470630764961243},{"id":"https://openalex.org/keywords/pandemic","display_name":"Pandemic","score":0.6387915015220642},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.528235137462616},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4997236728668213},{"id":"https://openalex.org/keywords/coronavirus-disease-2019","display_name":"Coronavirus disease 2019 (COVID-19)","score":0.4648882746696472},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.32809746265411377},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.12778055667877197},{"id":"https://openalex.org/keywords/philosophy","display_name":"Philosophy","score":0.08493542671203613}],"concepts":[{"id":"https://openalex.org/C90805587","wikidata":"https://www.wikidata.org/wiki/Q10944557","display_name":"Word (group theory)","level":2,"score":0.6470630764961243},{"id":"https://openalex.org/C89623803","wikidata":"https://www.wikidata.org/wiki/Q12184","display_name":"Pandemic","level":5,"score":0.6387915015220642},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.528235137462616},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4997236728668213},{"id":"https://openalex.org/C3008058167","wikidata":"https://www.wikidata.org/wiki/Q84263196","display_name":"Coronavirus disease 2019 (COVID-19)","level":4,"score":0.4648882746696472},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.32809746265411377},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.12778055667877197},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.08493542671203613},{"id":"https://openalex.org/C524204448","wikidata":"https://www.wikidata.org/wiki/Q788926","display_name":"Infectious disease (medical specialty)","level":3,"score":0.0},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/s13040-023-00332-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13040-023-00332-2","pdf_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/s13040-023-00332-2","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},{"id":"pmid:37147665","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37147665","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData mining","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10161184","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10161184","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10161184/pdf/13040_2023_Article_332.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BioData Min","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:0ca46b5ba952412d87498580ef533b0c","is_oa":true,"landing_page_url":"https://doaj.org/article/0ca46b5ba952412d87498580ef533b0c","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BioData Mining, Vol 16, Iss 1, Pp 1-14 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s13040-023-00332-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13040-023-00332-2","pdf_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/s13040-023-00332-2","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.6399999856948853}],"awards":[{"id":"https://openalex.org/G1729374867","display_name":null,"funder_award_id":"R01 HG010067","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G2769988617","display_name":null,"funder_award_id":"GBMF 4552","funder_id":"https://openalex.org/F4320306202","funder_display_name":"Gordon and Betty Moore Foundation"},{"id":"https://openalex.org/G516917286","display_name":null,"funder_award_id":"HG010067","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7614424270","display_name":null,"funder_award_id":"GBMF4552","funder_id":"https://openalex.org/F4320306202","funder_display_name":"Gordon and Betty Moore Foundation"},{"id":"https://openalex.org/G899795625","display_name":null,"funder_award_id":"R01 HG010067","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306202","display_name":"Gordon and Betty Moore Foundation","ror":"https://ror.org/006wxqw41"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4372331829.pdf"},"referenced_works_count":43,"referenced_works":["https://openalex.org/W1570098300","https://openalex.org/W1610821757","https://openalex.org/W1987847924","https://openalex.org/W2005482834","https://openalex.org/W2022484638","https://openalex.org/W2029017735","https://openalex.org/W2045435533","https://openalex.org/W2057069782","https://openalex.org/W2063804110","https://openalex.org/W2414378847","https://openalex.org/W2416513196","https://openalex.org/W2489258484","https://openalex.org/W2502276222","https://openalex.org/W2740377422","https://openalex.org/W2752636837","https://openalex.org/W2768668893","https://openalex.org/W2787132789","https://openalex.org/W2789202651","https://openalex.org/W2799073995","https://openalex.org/W2804830075","https://openalex.org/W2805334656","https://openalex.org/W2884348884","https://openalex.org/W2899611588","https://openalex.org/W2944989610","https://openalex.org/W2946690328","https://openalex.org/W2970101462","https://openalex.org/W2979029604","https://openalex.org/W2986870495","https://openalex.org/W3006645647","https://openalex.org/W3009906937","https://openalex.org/W3085890295","https://openalex.org/W3092121807","https://openalex.org/W3098861490","https://openalex.org/W3104389660","https://openalex.org/W3106754931","https://openalex.org/W3150044582","https://openalex.org/W3165747182","https://openalex.org/W3205990963","https://openalex.org/W4246334968","https://openalex.org/W4252218005","https://openalex.org/W4255645653","https://openalex.org/W4317801997","https://openalex.org/W6910473541"],"related_works":["https://openalex.org/W4205698903","https://openalex.org/W4400613637","https://openalex.org/W4294968941","https://openalex.org/W4283819461","https://openalex.org/W4390279739","https://openalex.org/W4205413867","https://openalex.org/W3179695362","https://openalex.org/W4394620624","https://openalex.org/W3177646415","https://openalex.org/W3046517191"],"abstract_inverted_index":{"While":[0],"we":[1,12,65],"often":[2],"think":[3],"of":[4,81,89,120],"words":[5,19],"as":[6,130],"having":[7],"a":[8,16,157,193],"fixed":[9],"meaning":[10],"that":[11,54,64,68,78,137,162],"use":[13],"to":[14,51,73,100,150,165,180,198],"describe":[15],"changing":[17],"world,":[18],"are":[20,147],"also":[21,28,155],"dynamic":[22],"and":[23,47,57,109,133,144,187,191,205],"changing.":[24],"Scientific":[25],"research":[26,176],"can":[27],"be":[29],"remarkably":[30],"fast-moving,":[31],"with":[32],"new":[33,203],"concepts":[34],"or":[35],"approaches":[36],"rapidly":[37],"gaining":[38],"mind":[39],"share.":[40],"We":[41,96,135,154],"examined":[42],"scientific":[43],"writing,":[44],"both":[45,107,124],"preprint":[46],"pre-publication":[48,142,188],"peer-reviewed":[49,143,189],"text,":[50,190],"identify":[52],"terms":[53,128,168,201],"have":[55],"changed":[56,84],"examine":[58,181],"their":[59],"use.":[60],"One":[61],"particular":[62],"challenge":[63],"faced":[66],"was":[67],"the":[69,79,92,138,151,178],"shift":[70,103,183],"from":[71],"closed":[72],"open":[74],"access":[75],"publishing":[76],"meant":[77],"size":[80],"available":[82],"corpora":[83],"by":[85,104],"over":[86],"an":[87,98],"order":[88],"magnitude":[90],"in":[91,123,184],"last":[93],"two":[94],"decades.":[95],"developed":[97],"approach":[99],"evaluate":[101],"semantic":[102,182],"accounting":[105],"for":[106,127,160,195],"intra-":[108],"inter-year":[110],"variability":[111],"using":[112],"multiple":[113],"integrated":[114],"models.":[115],"This":[116],"analysis":[117],"revealed":[118],"thousands":[119],"change":[121],"points":[122],"corpora,":[125],"including":[126],"such":[129],"'cas9',":[131],"'pandemic',":[132],"'sars'.":[134],"found":[136],"consistent":[139],"change-points":[140],"between":[141],"preprinted":[145],"text":[146],"largely":[148],"related":[149],"COVID-19":[152],"pandemic.":[153],"created":[156],"web":[158],"app":[159],"exploration":[161],"allows":[163],"users":[164],"investigate":[166],"individual":[167],"(":[169],"https://greenelab.github.io/word-lapse/":[170],").":[171],"To":[172],"our":[173,175],"knowledge,":[174],"is":[177],"first":[179],"biomedical":[185],"preprints":[186],"provides":[192],"foundation":[194],"future":[196],"work":[197],"understand":[199],"how":[200,206],"acquire":[202],"meanings":[204],"peer":[207],"review":[208],"affects":[209],"this":[210],"process.":[211]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
