{"id":"https://openalex.org/W4297263939","doi":"https://doi.org/10.1186/s13040-022-00309-7","title":"Interpretable recurrent neural network models for dynamic prediction of the extubation failure risk in patients with invasive mechanical ventilation in the intensive care unit","display_name":"Interpretable recurrent neural network models for dynamic prediction of the extubation failure risk in patients with invasive mechanical ventilation in the intensive care unit","publication_year":2022,"publication_date":"2022-09-27","ids":{"openalex":"https://openalex.org/W4297263939","doi":"https://doi.org/10.1186/s13040-022-00309-7","pmid":"https://pubmed.ncbi.nlm.nih.gov/36163063"},"language":"en","primary_location":{"id":"doi:10.1186/s13040-022-00309-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13040-022-00309-7","pdf_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/s13040-022-00309-7","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/s13040-022-00309-7","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5003861058","display_name":"Zhixuan Zeng","orcid":"https://orcid.org/0000-0001-9740-1342"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]},{"id":"https://openalex.org/I4210153856","display_name":"Second Xiangya Hospital of Central South University","ror":"https://ror.org/053v2gh09","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210153856"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhixuan Zeng","raw_affiliation_strings":["Department of Emergency Medicine, The Second Xiangya Hospital of Central South University, Changsha, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Emergency Medicine, The Second Xiangya Hospital of Central South University, Changsha, China","institution_ids":["https://openalex.org/I4210153856","https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101400839","display_name":"Xianming Tang","orcid":"https://orcid.org/0009-0007-4729-2353"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]},{"id":"https://openalex.org/I4210153856","display_name":"Second Xiangya Hospital of Central South University","ror":"https://ror.org/053v2gh09","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210153856"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xianming Tang","raw_affiliation_strings":["Department of Emergency Medicine, The Second Xiangya Hospital of Central South University, Changsha, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Emergency Medicine, The Second Xiangya Hospital of Central South University, Changsha, China","institution_ids":["https://openalex.org/I4210153856","https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100355649","display_name":"Yang Liu","orcid":"https://orcid.org/0000-0001-5834-9318"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]},{"id":"https://openalex.org/I4210153856","display_name":"Second Xiangya Hospital of Central South University","ror":"https://ror.org/053v2gh09","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210153856"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yang Liu","raw_affiliation_strings":["Department of Rehabilitation, The Second Xiangya Hospital of Central South University, Changsha, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Rehabilitation, The Second Xiangya Hospital of Central South University, Changsha, China","institution_ids":["https://openalex.org/I4210153856","https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088294646","display_name":"Zhengkun He","orcid":"https://orcid.org/0000-0003-3509-3094"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhengkun He","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University, Changsha, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5031114738","display_name":"Xun Gong","orcid":"https://orcid.org/0000-0003-3492-0190"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]},{"id":"https://openalex.org/I4210153856","display_name":"Second Xiangya Hospital of Central South University","ror":"https://ror.org/053v2gh09","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210153856"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xun Gong","raw_affiliation_strings":["Department of Emergency Medicine, The Second Xiangya Hospital of Central South University, Changsha, China. gongxun1246@csu.edu.cn","Department of Emergency Medicine, The Second Xiangya Hospital of Central South University, Changsha, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Emergency Medicine, The Second Xiangya Hospital of Central South University, Changsha, China. gongxun1246@csu.edu.cn","institution_ids":["https://openalex.org/I4210153856","https://openalex.org/I139660479"]},{"raw_affiliation_string":"Department of Emergency Medicine, The Second Xiangya Hospital of Central South University, Changsha, China","institution_ids":["https://openalex.org/I4210153856","https://openalex.org/I139660479"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5031114738"],"corresponding_institution_ids":["https://openalex.org/I139660479","https://openalex.org/I4210153856"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":3.7781,"has_fulltext":true,"cited_by_count":28,"citation_normalized_percentile":{"value":0.94646306,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"15","issue":"1","first_page":"21","last_page":"21"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10322","display_name":"Respiratory Support and Mechanisms","score":0.8761000037193298,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10322","display_name":"Respiratory Support and Mechanisms","score":0.8761000037193298,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11260","display_name":"Tracheal and airway disorders","score":0.025200000032782555,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11681","display_name":"Nosocomial Infections in ICU","score":0.022600000724196434,"subfield":{"id":"https://openalex.org/subfields/2706","display_name":"Critical Care and Intensive Care Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/recurrent-neural-network","display_name":"Recurrent neural network","score":0.8653472661972046},{"id":"https://openalex.org/keywords/mechanical-ventilation","display_name":"Mechanical ventilation","score":0.621019184589386},{"id":"https://openalex.org/keywords/receiver-operating-characteristic","display_name":"Receiver operating characteristic","score":0.6083629727363586},{"id":"https://openalex.org/keywords/random-forest","display_name":"Random forest","score":0.6027317643165588},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5606165528297424},{"id":"https://openalex.org/keywords/logistic-regression","display_name":"Logistic regression","score":0.5446687340736389},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5187259316444397},{"id":"https://openalex.org/keywords/intensive-care-unit","display_name":"Intensive care unit","score":0.5016257762908936},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.44561952352523804},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.443865031003952},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.29249563813209534},{"id":"https://openalex.org/keywords/intensive-care-medicine","display_name":"Intensive care medicine","score":0.21737080812454224},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.15470555424690247}],"concepts":[{"id":"https://openalex.org/C147168706","wikidata":"https://www.wikidata.org/wiki/Q1457734","display_name":"Recurrent neural network","level":3,"score":0.8653472661972046},{"id":"https://openalex.org/C2777080012","wikidata":"https://www.wikidata.org/wiki/Q3766250","display_name":"Mechanical ventilation","level":2,"score":0.621019184589386},{"id":"https://openalex.org/C58471807","wikidata":"https://www.wikidata.org/wiki/Q327120","display_name":"Receiver operating characteristic","level":2,"score":0.6083629727363586},{"id":"https://openalex.org/C169258074","wikidata":"https://www.wikidata.org/wiki/Q245748","display_name":"Random forest","level":2,"score":0.6027317643165588},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5606165528297424},{"id":"https://openalex.org/C151956035","wikidata":"https://www.wikidata.org/wiki/Q1132755","display_name":"Logistic regression","level":2,"score":0.5446687340736389},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5187259316444397},{"id":"https://openalex.org/C2776376669","wikidata":"https://www.wikidata.org/wiki/Q5094647","display_name":"Intensive care unit","level":2,"score":0.5016257762908936},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.44561952352523804},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.443865031003952},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.29249563813209534},{"id":"https://openalex.org/C177713679","wikidata":"https://www.wikidata.org/wiki/Q679690","display_name":"Intensive care medicine","level":1,"score":0.21737080812454224},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.15470555424690247}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/s13040-022-00309-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13040-022-00309-7","pdf_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/s13040-022-00309-7","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},{"id":"pmid:36163063","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36163063","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData mining","raw_type":null},{"id":"pmh:oai:doaj.org/article:a618c3e334a946d092b1bb209b69c023","is_oa":false,"landing_page_url":"https://doaj.org/article/a618c3e334a946d092b1bb209b69c023","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BioData Mining, Vol 15, Iss 1, Pp 1-19 (2022)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9513908","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9513908","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BioData Min","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13040-022-00309-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13040-022-00309-7","pdf_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/s13040-022-00309-7","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321514","display_name":"Central South University","ror":"https://ror.org/00f1zfq44"},{"id":"https://openalex.org/F4320335740","display_name":"Xiangya Hospital, Central South University","ror":"https://ror.org/05akvb491"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4297263939.pdf","grobid_xml":"https://content.openalex.org/works/W4297263939.grobid-xml"},"referenced_works_count":39,"referenced_works":["https://openalex.org/W1584308190","https://openalex.org/W1978423883","https://openalex.org/W1985448535","https://openalex.org/W2022115441","https://openalex.org/W2045030989","https://openalex.org/W2062346198","https://openalex.org/W2064675550","https://openalex.org/W2110660457","https://openalex.org/W2112790241","https://openalex.org/W2134947937","https://openalex.org/W2140066904","https://openalex.org/W2140771005","https://openalex.org/W2142104245","https://openalex.org/W2155913350","https://openalex.org/W2157772549","https://openalex.org/W2161177864","https://openalex.org/W2162800060","https://openalex.org/W2178549406","https://openalex.org/W2313915883","https://openalex.org/W2328176404","https://openalex.org/W2331656265","https://openalex.org/W2754259319","https://openalex.org/W2762658547","https://openalex.org/W2888469131","https://openalex.org/W2892592994","https://openalex.org/W2899720878","https://openalex.org/W2900495370","https://openalex.org/W2964696298","https://openalex.org/W2980014655","https://openalex.org/W2981428249","https://openalex.org/W3011812967","https://openalex.org/W3103032564","https://openalex.org/W3109732441","https://openalex.org/W3154103740","https://openalex.org/W3163248728","https://openalex.org/W3197316015","https://openalex.org/W3202393902","https://openalex.org/W3205779208","https://openalex.org/W4231422242"],"related_works":["https://openalex.org/W2761860407","https://openalex.org/W4237099237","https://openalex.org/W14719196","https://openalex.org/W3186334452","https://openalex.org/W2753772539","https://openalex.org/W1989471045","https://openalex.org/W2993632815","https://openalex.org/W2067415355","https://openalex.org/W2328649847","https://openalex.org/W4292367209"],"abstract_inverted_index":{"BACKGROUND:":[0],"Clinical":[1],"decision":[2],"of":[3,11,25,84,140,163,189,192],"extubation":[4,20,28],"is":[5],"a":[6,73,190],"challenge":[7],"in":[8],"the":[9,60,87,93,138,141,172,184,204,208,215,226],"treatment":[10],"patient":[12],"with":[13,72],"invasive":[14],"mechanical":[15],"ventilation":[16],"(IMV),":[17],"since":[18],"existing":[19],"protocols":[21],"are":[22],"not":[23],"capable":[24],"precisely":[26],"predicting":[27,46,243],"failure":[29],"(EF).":[30],"This":[31],"study":[32,53],"aims":[33],"to":[34,107,121,136,225,249],"develop":[35],"and":[36,92,165,214,246],"validate":[37],"interpretable":[38],"recurrent":[39,95],"neural":[40],"network":[41],"(RNN)":[42],"models":[43,118,181,237],"for":[44,64,78,111,242,255],"dynamically":[45],"EF":[47,153,244],"risk.":[48],"METHODS:":[49],"A":[50,100],"retrospective":[51],"cohort":[52],"was":[54,105,134,232],"conducted":[55],"on":[56,143,171,183],"IMV":[57],"patients":[58],"from":[59],"Medical":[61],"Information":[62],"Mart":[63],"Intensive":[65],"Care":[66],"IV":[67],"(MIMIC-IV)":[68],"database.":[69],"Time":[70],"series":[71],"4-h":[74],"resolution":[75],"were":[76,98,119,223],"built":[77],"all":[79],"included":[80,149],"patients.":[81],"Two":[82],"types":[83],"RNN":[85,114,117,180,227,236],"models,":[86,206,228],"long":[88],"short-term":[89],"memory":[90],"(LSTM)":[91],"gated":[94],"unit":[96],"(GRU),":[97],"developed.":[99],"stepwise":[101],"logistic":[102],"regression":[103],"model":[104,144,220],"used":[106],"select":[108],"key":[109],"features":[110,142,186,194],"developing":[112],"light-version":[113,179],"models.":[115,127,202],"The":[116,128,155,178,235],"compared":[120],"other":[122],"five":[123],"non-temporal":[124,205],"machine":[125],"learning":[126],"Shapley":[129],"additive":[130],"explanations":[131],"(SHAP)":[132],"value":[133],"applied":[135],"explain":[137],"influence":[139],"prediction.":[145],"RESULTS:":[146],"Of":[147],"8,599":[148],"patients,":[150],"2,609":[151],"had":[152],"(30.3%).":[154],"area":[156],"under":[157],"receiver":[158],"operating":[159],"characteristic":[160],"curve":[161],"(AUROC)":[162],"LSTM":[164],"GRU":[166],"showed":[167,195],"no":[168],"statistical":[169],"difference":[170],"test":[173],"set":[174],"(0.828":[175],"vs.":[176],"0.829).":[177],"based":[182],"26":[185],"selected":[187],"out":[188],"total":[191],"89":[193],"comparable":[196,224],"performance":[197,241],"as":[198],"their":[199,230],"corresponding":[200],"full-version":[201],"Among":[203],"only":[207],"random":[209],"forest":[210],"(RF)":[211],"(AUROC:":[212,221],"0.820)":[213],"extreme":[216],"gradient":[217],"boosting":[218],"(XGB)":[219],"0.823)":[222],"but":[229],"calibration":[231],"deviated.":[233],"CONCLUSIONS:":[234],"have":[238,247],"excellent":[239],"predictive":[240],"risk":[245],"potential":[248],"become":[250],"real-time":[251],"assistant":[252],"decision-making":[253],"systems":[254],"extubation.":[256]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":11},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":1}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2025-10-10T00:00:00"}
