{"id":"https://openalex.org/W3168219035","doi":"https://doi.org/10.1186/s13040-021-00269-4","title":"Biological knowledge-slanted random forest approach for the classification of calcified aortic valve stenosis","display_name":"Biological knowledge-slanted random forest approach for the classification of calcified aortic valve stenosis","publication_year":2021,"publication_date":"2021-07-23","ids":{"openalex":"https://openalex.org/W3168219035","doi":"https://doi.org/10.1186/s13040-021-00269-4","mag":"3168219035","pmid":"https://pubmed.ncbi.nlm.nih.gov/34301292"},"language":"en","primary_location":{"id":"doi:10.1186/s13040-021-00269-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13040-021-00269-4","pdf_url":"https://biodatamining.biomedcentral.com/track/pdf/10.1186/s13040-021-00269-4","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://biodatamining.biomedcentral.com/track/pdf/10.1186/s13040-021-00269-4","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5013376132","display_name":"\u00c9rika Cantor","orcid":"https://orcid.org/0000-0003-3320-6032"},"institutions":[{"id":"https://openalex.org/I79274474","display_name":"University of Valpara\u00edso","ror":"https://ror.org/00h9jrb69","country_code":"CL","type":"education","lineage":["https://openalex.org/I79274474"]}],"countries":["CL"],"is_corresponding":true,"raw_author_name":"Erika Cantor","raw_affiliation_strings":["Institute of Statistics, Universidad de Valpara\u00edso, Valpara\u00edso, Chile. erika.cantor@postgrado.uv.cl","Institute of Statistics, Universidad de Valpara\u00edso, Valpara\u00edso, Chile"],"raw_orcid":"https://orcid.org/0000-0003-3320-6032","affiliations":[{"raw_affiliation_string":"Institute of Statistics, Universidad de Valpara\u00edso, Valpara\u00edso, Chile. erika.cantor@postgrado.uv.cl","institution_ids":["https://openalex.org/I79274474"]},{"raw_affiliation_string":"Institute of Statistics, Universidad de Valpara\u00edso, Valpara\u00edso, Chile","institution_ids":["https://openalex.org/I79274474"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088560375","display_name":"Rodrigo Salas","orcid":"https://orcid.org/0000-0002-0350-6811"},"institutions":[{"id":"https://openalex.org/I79274474","display_name":"University of Valpara\u00edso","ror":"https://ror.org/00h9jrb69","country_code":"CL","type":"education","lineage":["https://openalex.org/I79274474"]}],"countries":["CL"],"is_corresponding":false,"raw_author_name":"Rodrigo Salas","raw_affiliation_strings":["Centro de Investigaci\u00f3n y Desarrollo en Ingenier\u00eda en Salud, CINGS-UV, Universidad de Valpara\u00edso, Valpara\u00edso, Chile","School of Biomedical Engineering, Universidad de Valpara\u00edso, Valpara\u00edso, Chile"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centro de Investigaci\u00f3n y Desarrollo en Ingenier\u00eda en Salud, CINGS-UV, Universidad de Valpara\u00edso, Valpara\u00edso, Chile","institution_ids":["https://openalex.org/I79274474"]},{"raw_affiliation_string":"School of Biomedical Engineering, Universidad de Valpara\u00edso, Valpara\u00edso, Chile","institution_ids":["https://openalex.org/I79274474"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048671602","display_name":"Harvey Rosas","orcid":"https://orcid.org/0000-0002-1751-9701"},"institutions":[{"id":"https://openalex.org/I79274474","display_name":"University of Valpara\u00edso","ror":"https://ror.org/00h9jrb69","country_code":"CL","type":"education","lineage":["https://openalex.org/I79274474"]}],"countries":["CL"],"is_corresponding":false,"raw_author_name":"Harvey Rosas","raw_affiliation_strings":["Institute of Statistics, Universidad de Valpara\u00edso, Valpara\u00edso, Chile"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Statistics, Universidad de Valpara\u00edso, Valpara\u00edso, Chile","institution_ids":["https://openalex.org/I79274474"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009588914","display_name":"Sandra Guauque-Olarte","orcid":"https://orcid.org/0000-0003-0336-9682"},"institutions":[{"id":"https://openalex.org/I4210152403","display_name":"Universidad Cooperativa de Colombia","ror":"https://ror.org/04td15k45","country_code":"CO","type":"education","lineage":["https://openalex.org/I4210152403"]}],"countries":["CO"],"is_corresponding":false,"raw_author_name":"Sandra Guauque-Olarte","raw_affiliation_strings":["Faculty of Dentistry, Universidad Cooperativa de Colombia, Envigado, Colombia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Dentistry, Universidad Cooperativa de Colombia, Envigado, Colombia","institution_ids":["https://openalex.org/I4210152403"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5013376132"],"corresponding_institution_ids":["https://openalex.org/I79274474"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.7945,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.74017659,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"14","issue":"1","first_page":"35","last_page":"35"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10172","display_name":"Cardiac Valve Diseases and Treatments","score":0.9133999943733215,"subfield":{"id":"https://openalex.org/subfields/2705","display_name":"Cardiology and Cardiovascular Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10172","display_name":"Cardiac Valve Diseases and Treatments","score":0.9133999943733215,"subfield":{"id":"https://openalex.org/subfields/2705","display_name":"Cardiology and Cardiovascular Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10618","display_name":"Aortic Disease and Treatment Approaches","score":0.025800000876188278,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10300","display_name":"Congenital Heart Disease Studies","score":0.012500000186264515,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/random-forest","display_name":"Random forest","score":0.7779021859169006},{"id":"https://openalex.org/keywords/stenosis","display_name":"Stenosis","score":0.6257141828536987},{"id":"https://openalex.org/keywords/aortic-valve","display_name":"Aortic valve","score":0.5994083881378174},{"id":"https://openalex.org/keywords/bicuspid-aortic-valve","display_name":"Bicuspid aortic valve","score":0.5611133575439453},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.4864072799682617},{"id":"https://openalex.org/keywords/bicuspid-valve","display_name":"Bicuspid valve","score":0.46622493863105774},{"id":"https://openalex.org/keywords/aortic-valve-stenosis","display_name":"Aortic valve stenosis","score":0.42473816871643066},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.3988550007343292},{"id":"https://openalex.org/keywords/cardiology","display_name":"Cardiology","score":0.3981996178627014},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3408069312572479},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.20733195543289185}],"concepts":[{"id":"https://openalex.org/C169258074","wikidata":"https://www.wikidata.org/wiki/Q245748","display_name":"Random forest","level":2,"score":0.7779021859169006},{"id":"https://openalex.org/C2780007028","wikidata":"https://www.wikidata.org/wiki/Q2343082","display_name":"Stenosis","level":2,"score":0.6257141828536987},{"id":"https://openalex.org/C2780714102","wikidata":"https://www.wikidata.org/wiki/Q616071","display_name":"Aortic valve","level":2,"score":0.5994083881378174},{"id":"https://openalex.org/C2781355080","wikidata":"https://www.wikidata.org/wiki/Q860167","display_name":"Bicuspid aortic valve","level":3,"score":0.5611133575439453},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.4864072799682617},{"id":"https://openalex.org/C2910672364","wikidata":"https://www.wikidata.org/wiki/Q369939","display_name":"Bicuspid valve","level":4,"score":0.46622493863105774},{"id":"https://openalex.org/C2781414266","wikidata":"https://www.wikidata.org/wiki/Q531019","display_name":"Aortic valve stenosis","level":3,"score":0.42473816871643066},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.3988550007343292},{"id":"https://openalex.org/C164705383","wikidata":"https://www.wikidata.org/wiki/Q10379","display_name":"Cardiology","level":1,"score":0.3981996178627014},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3408069312572479},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.20733195543289185}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/s13040-021-00269-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13040-021-00269-4","pdf_url":"https://biodatamining.biomedcentral.com/track/pdf/10.1186/s13040-021-00269-4","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},{"id":"pmid:34301292","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34301292","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData mining","raw_type":null},{"id":"pmh:oai:doaj.org/article:162e33cf5e174b8fa93d1c9b9153c544","is_oa":true,"landing_page_url":"https://doaj.org/article/162e33cf5e174b8fa93d1c9b9153c544","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BioData Mining, Vol 14, Iss 1, Pp 1-11 (2021)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:8305490","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8305490","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BioData Min","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13040-021-00269-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13040-021-00269-4","pdf_url":"https://biodatamining.biomedcentral.com/track/pdf/10.1186/s13040-021-00269-4","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Reduced inequalities","id":"https://metadata.un.org/sdg/10","score":0.5699999928474426}],"awards":[{"id":"https://openalex.org/G7510232683","display_name":null,"funder_award_id":"DOCTORADO BECAS CHILE/2019","funder_id":"https://openalex.org/F4320331146","funder_display_name":"Agencia Nacional de Investigaci\u00f3n y Desarrollo"}],"funders":[{"id":"https://openalex.org/F4320319253","display_name":"Agen\u021bia Na\u021bional\u0103 pentru Cercetare \u0219i Dezvoltare","ror":null},{"id":"https://openalex.org/F4320331146","display_name":"Agencia Nacional de Investigaci\u00f3n y Desarrollo","ror":null},{"id":"https://openalex.org/F4320338463","display_name":"CHIST-ERA","ror":"https://ror.org/00rbzpz17"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3168219035.pdf","grobid_xml":"https://content.openalex.org/works/W3168219035.grobid-xml"},"referenced_works_count":33,"referenced_works":["https://openalex.org/W1493357981","https://openalex.org/W1575075233","https://openalex.org/W1831050183","https://openalex.org/W1966331733","https://openalex.org/W2096173332","https://openalex.org/W2099178040","https://openalex.org/W2101330803","https://openalex.org/W2111826453","https://openalex.org/W2119220491","https://openalex.org/W2157395790","https://openalex.org/W2187089797","https://openalex.org/W2400517226","https://openalex.org/W2409626119","https://openalex.org/W2496929102","https://openalex.org/W2737706773","https://openalex.org/W2792919287","https://openalex.org/W2907063321","https://openalex.org/W2911964244","https://openalex.org/W2944954104","https://openalex.org/W2963605105","https://openalex.org/W2973941913","https://openalex.org/W2982894044","https://openalex.org/W3000045279","https://openalex.org/W3010719259","https://openalex.org/W3025125480","https://openalex.org/W3025613442","https://openalex.org/W3026014143","https://openalex.org/W3034152715","https://openalex.org/W3087804710","https://openalex.org/W3102027041","https://openalex.org/W3113140258","https://openalex.org/W3144820984","https://openalex.org/W4230962320"],"related_works":["https://openalex.org/W2008667555","https://openalex.org/W4210497008","https://openalex.org/W2009392121","https://openalex.org/W2092848625","https://openalex.org/W1771153670","https://openalex.org/W2039533559","https://openalex.org/W2030142275","https://openalex.org/W2468474977","https://openalex.org/W4250049887","https://openalex.org/W3159256707"],"abstract_inverted_index":{"BACKGROUND:":[0],"Calcific":[1],"aortic":[2,37,42],"valve":[3,38,43],"stenosis":[4],"(CAVS)":[5],"is":[6,12],"a":[7,53,62,71],"fatal":[8],"disease":[9],"and":[10,40,110,124,159,170,213],"there":[11],"no":[13],"pharmacological":[14],"treatment":[15],"to":[16,25,75,80,85,126,153,203],"prevent":[17],"the":[18,87,117,179,223],"progression":[19],"of":[20,92,116,141,181,191,218,225],"CAVS.":[21,130],"This":[22,59],"study":[23,60,220],"aims":[24],"identify":[26],"genes":[27,77,94],"potentially":[28],"implicated":[29],"with":[30,34,47,100,129,133,150,157,168,176,188,210],"CAVS":[31,101],"in":[32,45,78,97,148,206],"patients":[33,48,167,175],"congenital":[35],"bicuspid":[36],"(BAV)":[39],"tricuspid":[41],"(TAV)":[44],"comparison":[46,132,149],"having":[49],"normal":[50,112,177,214],"valves,":[51,178],"using":[52,67,121],"knowledge-slanted":[54,63,195],"random":[55,64],"forest":[56,65],"(RF).":[57],"RESULTS:":[58],"implemented":[61],"(RF)":[66],"information":[68,184],"extracted":[69],"from":[70],"protein-protein":[72],"interactions":[73],"network":[74],"rank":[76],"order":[79],"modify":[81],"their":[82],"selection":[83],"probability":[84],"draw":[86],"candidate":[88],"split-variables.":[89],"A":[90,131],"total":[91],"15,191":[93],"were":[95,172],"assessed":[96],"19":[98],"valves":[99],"(BAV,":[102],"n":[103,107],"=":[104,108],"10;":[105],"TAV,":[106,212],"9)":[109],"8":[111],"valves.":[113,215],"The":[114,139,194,216],"performance":[115,140],"model":[118],"was":[119,136,185],"evaluated":[120],"accuracy,":[122],"sensitivity,":[123],"specificity":[125],"discriminate":[127],"cases":[128,155,209],"conventional":[134,151],"RF":[135,152,196],"also":[137],"performed.":[138],"this":[142,219],"proposed":[143],"approach":[144,197],"reported":[145],"improved":[146],"accuracy":[147,190],"classify":[154],"separately":[156],"BAV":[158,169],"TAV":[160,171],"(Slanted":[161],"RF:":[162],"59.3%":[163],"versus":[164],"40.7%).":[165],"When":[166],"grouped":[173],"against":[174],"addition":[180],"prior":[182,199],"biological":[183,200,226],"not":[186],"relevant":[187],"an":[189],"92.6%.":[192],"CONCLUSION:":[193],"reflected":[198],"knowledge,":[201],"leading":[202],"better":[204],"precision":[205],"distinguishing":[207],"between":[208],"BAV,":[211],"results":[217],"suggest":[221],"that":[222],"integration":[224],"knowledge":[227],"can":[228],"be":[229],"useful":[230],"during":[231],"difficult":[232],"classification":[233],"tasks.":[234]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
