{"id":"https://openalex.org/W3138565406","doi":"https://doi.org/10.1186/s13040-021-00253-y","title":"Genetic risk score for ovarian cancer based on chromosomal-scale length variation","display_name":"Genetic risk score for ovarian cancer based on chromosomal-scale length variation","publication_year":2021,"publication_date":"2021-03-09","ids":{"openalex":"https://openalex.org/W3138565406","doi":"https://doi.org/10.1186/s13040-021-00253-y","mag":"3138565406","pmid":"https://pubmed.ncbi.nlm.nih.gov/33750420"},"language":"en","primary_location":{"id":"doi:10.1186/s13040-021-00253-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13040-021-00253-y","pdf_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/s13040-021-00253-y","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/s13040-021-00253-y","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5012287822","display_name":"Christopher Toh","orcid":"https://orcid.org/0000-0003-3298-9055"},"institutions":[{"id":"https://openalex.org/I204250578","display_name":"University of California, Irvine","ror":"https://ror.org/04gyf1771","country_code":"US","type":"education","lineage":["https://openalex.org/I204250578"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Christopher Toh","raw_affiliation_strings":["Department of Biomedical Engineering, University of California, Irvine, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, University of California, Irvine, USA","institution_ids":["https://openalex.org/I204250578"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5022307884","display_name":"James P. Brody","orcid":"https://orcid.org/0000-0002-7995-5197"},"institutions":[{"id":"https://openalex.org/I204250578","display_name":"University of California, Irvine","ror":"https://ror.org/04gyf1771","country_code":"US","type":"education","lineage":["https://openalex.org/I204250578"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James P. Brody","raw_affiliation_strings":["Department of Biomedical Engineering, University of California, Irvine, USA. jpbrody@uci.edu","Department of Biomedical Engineering, University of California, Irvine, USA"],"raw_orcid":"https://orcid.org/0000-0002-7995-5197","affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, University of California, Irvine, USA. jpbrody@uci.edu","institution_ids":["https://openalex.org/I204250578"]},{"raw_affiliation_string":"Department of Biomedical Engineering, University of California, Irvine, USA","institution_ids":["https://openalex.org/I204250578"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5012287822"],"corresponding_institution_ids":["https://openalex.org/I204250578"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.5349,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.81806742,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"14","issue":"1","first_page":"18","last_page":"18"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10550","display_name":"Ovarian cancer diagnosis and treatment","score":0.6315000057220459,"subfield":{"id":"https://openalex.org/subfields/2743","display_name":"Reproductive Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10550","display_name":"Ovarian cancer diagnosis and treatment","score":0.6315000057220459,"subfield":{"id":"https://openalex.org/subfields/2743","display_name":"Reproductive Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10769","display_name":"BRCA gene mutations in cancer","score":0.17170000076293945,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.05260000005364418,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ovarian-cancer","display_name":"Ovarian cancer","score":0.7501820921897888},{"id":"https://openalex.org/keywords/receiver-operating-characteristic","display_name":"Receiver operating characteristic","score":0.5500657558441162},{"id":"https://openalex.org/keywords/framingham-risk-score","display_name":"Framingham Risk Score","score":0.497693806886673},{"id":"https://openalex.org/keywords/confidence-interval","display_name":"Confidence interval","score":0.4738723933696747},{"id":"https://openalex.org/keywords/genetic-variation","display_name":"Genetic variation","score":0.4264657497406006},{"id":"https://openalex.org/keywords/oncology","display_name":"Oncology","score":0.41721051931381226},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.3978689908981323},{"id":"https://openalex.org/keywords/gynecology","display_name":"Gynecology","score":0.3544884920120239},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.33581268787384033},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.3218868374824524},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.19340240955352783},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.105231374502182}],"concepts":[{"id":"https://openalex.org/C2780427987","wikidata":"https://www.wikidata.org/wiki/Q172341","display_name":"Ovarian cancer","level":3,"score":0.7501820921897888},{"id":"https://openalex.org/C58471807","wikidata":"https://www.wikidata.org/wiki/Q327120","display_name":"Receiver operating characteristic","level":2,"score":0.5500657558441162},{"id":"https://openalex.org/C11783203","wikidata":"https://www.wikidata.org/wiki/Q5478027","display_name":"Framingham Risk Score","level":3,"score":0.497693806886673},{"id":"https://openalex.org/C44249647","wikidata":"https://www.wikidata.org/wiki/Q208498","display_name":"Confidence interval","level":2,"score":0.4738723933696747},{"id":"https://openalex.org/C68873052","wikidata":"https://www.wikidata.org/wiki/Q349856","display_name":"Genetic variation","level":3,"score":0.4264657497406006},{"id":"https://openalex.org/C143998085","wikidata":"https://www.wikidata.org/wiki/Q162555","display_name":"Oncology","level":1,"score":0.41721051931381226},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.3978689908981323},{"id":"https://openalex.org/C29456083","wikidata":"https://www.wikidata.org/wiki/Q1221899","display_name":"Gynecology","level":1,"score":0.3544884920120239},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.33581268787384033},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.3218868374824524},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.19340240955352783},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.105231374502182},{"id":"https://openalex.org/C99454951","wikidata":"https://www.wikidata.org/wiki/Q932068","display_name":"Environmental health","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1186/s13040-021-00253-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13040-021-00253-y","pdf_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/s13040-021-00253-y","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},{"id":"pmid:33750420","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33750420","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData mining","raw_type":null},{"id":"pmh:oai:doaj.org/article:70450da4d7744c1892e0bb8801045fde","is_oa":true,"landing_page_url":"https://doaj.org/article/70450da4d7744c1892e0bb8801045fde","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BioData Mining, Vol 14, Iss 1, Pp 1-11 (2021)","raw_type":"article"},{"id":"pmh:oai:escholarship.org:ark:/13030/qt50p7x8dw","is_oa":true,"landing_page_url":"https://escholarship.org/uc/item/50p7x8dw","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BioData Mining, vol 14, iss 1","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7941679","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7941679","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BioData Min","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13040-021-00253-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13040-021-00253-y","pdf_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/s13040-021-00253-y","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.8700000047683716,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3138565406.pdf","grobid_xml":"https://content.openalex.org/works/W3138565406.grobid-xml"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W1546134956","https://openalex.org/W2044032354","https://openalex.org/W2044702943","https://openalex.org/W2070493638","https://openalex.org/W2080752222","https://openalex.org/W2095936660","https://openalex.org/W2096283457","https://openalex.org/W2105369704","https://openalex.org/W2123696077","https://openalex.org/W2133174470","https://openalex.org/W2140968934","https://openalex.org/W2143142289","https://openalex.org/W2148512375","https://openalex.org/W2157752701","https://openalex.org/W2158485828","https://openalex.org/W2225530246","https://openalex.org/W2530175569","https://openalex.org/W2560367415","https://openalex.org/W2578389545","https://openalex.org/W2618851150","https://openalex.org/W2749093116","https://openalex.org/W2762978466","https://openalex.org/W2765285264","https://openalex.org/W2795686629","https://openalex.org/W2803332630","https://openalex.org/W2807649309","https://openalex.org/W2886752110","https://openalex.org/W2889646458","https://openalex.org/W2910453686","https://openalex.org/W2953817258","https://openalex.org/W2963905884","https://openalex.org/W2980086570","https://openalex.org/W3028329270","https://openalex.org/W3034152715","https://openalex.org/W3086451139","https://openalex.org/W3092330504","https://openalex.org/W6765480823"],"related_works":["https://openalex.org/W4385649027","https://openalex.org/W2970784617","https://openalex.org/W2126639667","https://openalex.org/W2217963778","https://openalex.org/W2474554762","https://openalex.org/W2129882004","https://openalex.org/W4303685026","https://openalex.org/W1980276147","https://openalex.org/W3187081201","https://openalex.org/W2416466220"],"abstract_inverted_index":{"INTRODUCTION:":[0],"Twin":[1],"studies":[2],"indicate":[3],"that":[4,56,137,163],"a":[5,60,89,129,135,141,168,227],"substantial":[6],"fraction":[7],"of":[8,26,70,91,106,119,192,198,214,222],"ovarian":[9,37,42,48,96,107,147,231],"cancers":[10],"should":[11,40],"be":[12,32],"predictable":[13],"from":[14],"genetic":[15,50,61,76,151,181,206],"testing.":[16],"Genetic":[17],"risk":[18,29,51,62,77,152,170,182,207],"scores":[19,52],"can":[20,31,138],"stratify":[21,160],"women":[22,30,93,101,161],"into":[23],"different":[24],"classes":[25],"risk.":[27],"Higher":[28],"treated":[33],"or":[34,225],"screened":[35],"for":[36],"cancer,":[38],"which":[39],"reduce":[41],"cancer":[43,49],"death":[44],"rates.":[45],"However,":[46],"current":[47],"do":[53],"not":[54,226],"work":[55],"well.":[57],"We":[58,73,87,109,127],"developed":[59,185],"score":[63,78,153,183,208],"based":[64,154,209],"on":[65,155,210],"variations":[66],"in":[67,122],"the":[68,117,164,177,190,193],"length":[69,118,157,212],"chromosomes.":[71],"METHODS:":[72],"evaluated":[74],"this":[75],"using":[79],"data":[80],"collected":[81],"by":[82,113],"The":[83,150,180],"Cancer":[84],"Genome":[85],"Atlas.":[86],"synthesized":[88],"dataset":[90],"414":[92],"who":[94,102],"had":[95,103,143,167,186],"serous":[97],"carcinoma":[98],"and":[99],"4225":[100],"no":[104],"form":[105],"cancer.":[108,148,232],"characterized":[110],"each":[111,120],"woman":[112,142,228],"22":[114],"numbers,":[115],"representing":[116],"chromosome":[121],"their":[123],"germ":[124,215],"line":[125,216],"DNA.":[126],"used":[128],"gradient":[130],"boosting":[131],"machine":[132],"to":[133,176],"build":[134],"classifier":[136],"predict":[139],"whether":[140,224],"been":[144],"diagnosed":[145],"with":[146],"RESULTS:":[149],"chromosomal-scale":[156,211],"variation":[158,213],"could":[159],"such":[162],"highest":[165],"20%":[166],"160x":[169],"(95%":[171,200],"confidence":[172,201],"interval":[173,202],"50x-450x)":[174],"compared":[175],"lowest":[178],"20%.":[179],"we":[184],"an":[187,219],"area":[188],"under":[189],"curve":[191,197],"receiver":[194],"operating":[195],"characteristic":[196],"0.88":[199],"0.86-0.91).":[203],"CONCLUSION:":[204],"A":[205],"DNA":[217],"provides":[218],"effective":[220],"means":[221],"predicting":[223],"will":[229],"develop":[230]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":3},{"year":2021,"cited_by_count":1}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
