{"id":"https://openalex.org/W2755621310","doi":"https://doi.org/10.1186/s13040-017-0151-7","title":"Methods for enhancing the reproducibility of biomedical research findings using electronic health records","display_name":"Methods for enhancing the reproducibility of biomedical research findings using electronic health records","publication_year":2017,"publication_date":"2017-09-11","ids":{"openalex":"https://openalex.org/W2755621310","doi":"https://doi.org/10.1186/s13040-017-0151-7","mag":"2755621310","pmid":"https://pubmed.ncbi.nlm.nih.gov/28912836"},"language":"en","primary_location":{"id":"doi:10.1186/s13040-017-0151-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13040-017-0151-7","pdf_url":"https://biodatamining.biomedcentral.com/track/pdf/10.1186/s13040-017-0151-7","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://biodatamining.biomedcentral.com/track/pdf/10.1186/s13040-017-0151-7","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5073010916","display_name":"Spiros Denaxas","orcid":"https://orcid.org/0000-0001-9612-7791"},"institutions":[{"id":"https://openalex.org/I4210143902","display_name":"Farr Institute","ror":"https://ror.org/0585r9546","country_code":"GB","type":"education","lineage":["https://openalex.org/I4210143902"]},{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Spiros Denaxas","raw_affiliation_strings":["Farr Institute of Health Informatics Research, 222 Euston Road, London, UK","Institute of Health Informatics, University College London, 222 Euston Road, London, NW1 2DA UK","Institute of Health Informatics, University College London, 222 Euston Road, London, NW1 2DA, UK"],"raw_orcid":"https://orcid.org/0000-0001-9612-7791","affiliations":[{"raw_affiliation_string":"Farr Institute of Health Informatics Research, 222 Euston Road, London, UK","institution_ids":["https://openalex.org/I4210143902"]},{"raw_affiliation_string":"Institute of Health Informatics, University College London, 222 Euston Road, London, NW1 2DA UK","institution_ids":["https://openalex.org/I45129253"]},{"raw_affiliation_string":"Institute of Health Informatics, University College London, 222 Euston Road, London, NW1 2DA, UK","institution_ids":["https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000727068","display_name":"Kenan Direk","orcid":"https://orcid.org/0000-0001-9440-1638"},"institutions":[{"id":"https://openalex.org/I4210143902","display_name":"Farr Institute","ror":"https://ror.org/0585r9546","country_code":"GB","type":"education","lineage":["https://openalex.org/I4210143902"]},{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Kenan Direk","raw_affiliation_strings":["Farr Institute of Health Informatics Research, 222 Euston Road, London, UK","Institute of Health Informatics, University College London, 222 Euston Road, London, NW1 2DA UK","Institute of Health Informatics, University College London, 222 Euston Road, London, NW1 2DA, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Farr Institute of Health Informatics Research, 222 Euston Road, London, UK","institution_ids":["https://openalex.org/I4210143902"]},{"raw_affiliation_string":"Institute of Health Informatics, University College London, 222 Euston Road, London, NW1 2DA UK","institution_ids":["https://openalex.org/I45129253"]},{"raw_affiliation_string":"Institute of Health Informatics, University College London, 222 Euston Road, London, NW1 2DA, UK","institution_ids":["https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090561416","display_name":"Arturo Gonz\u00e1lez-Izquierdo","orcid":"https://orcid.org/0000-0002-0984-5830"},"institutions":[{"id":"https://openalex.org/I4210143902","display_name":"Farr Institute","ror":"https://ror.org/0585r9546","country_code":"GB","type":"education","lineage":["https://openalex.org/I4210143902"]},{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Arturo Gonzalez-Izquierdo","raw_affiliation_strings":["Farr Institute of Health Informatics Research, 222 Euston Road, London, UK","Institute of Health Informatics, University College London, 222 Euston Road, London, NW1 2DA UK","Institute of Health Informatics, University College London, 222 Euston Road, London, NW1 2DA, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Farr Institute of Health Informatics Research, 222 Euston Road, London, UK","institution_ids":["https://openalex.org/I4210143902"]},{"raw_affiliation_string":"Institute of Health Informatics, University College London, 222 Euston Road, London, NW1 2DA UK","institution_ids":["https://openalex.org/I45129253"]},{"raw_affiliation_string":"Institute of Health Informatics, University College London, 222 Euston Road, London, NW1 2DA, UK","institution_ids":["https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059036271","display_name":"Maria Pikoula","orcid":"https://orcid.org/0000-0002-9138-3603"},"institutions":[{"id":"https://openalex.org/I4210143902","display_name":"Farr Institute","ror":"https://ror.org/0585r9546","country_code":"GB","type":"education","lineage":["https://openalex.org/I4210143902"]},{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Maria Pikoula","raw_affiliation_strings":["Farr Institute of Health Informatics Research, 222 Euston Road, London, UK","Institute of Health Informatics, University College London, 222 Euston Road, London, NW1 2DA UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Farr Institute of Health Informatics Research, 222 Euston Road, London, UK","institution_ids":["https://openalex.org/I4210143902"]},{"raw_affiliation_string":"Institute of Health Informatics, University College London, 222 Euston Road, London, NW1 2DA UK","institution_ids":["https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007264926","display_name":"Sera Aylin Cakiroglu","orcid":"https://orcid.org/0000-0001-9562-9626"},"institutions":[{"id":"https://openalex.org/I2801081054","display_name":"The Francis Crick Institute","ror":"https://ror.org/04tnbqb63","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2801081054"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Aylin Cakiroglu","raw_affiliation_strings":["The Francis Crick Institute, 1 Midland Road, London, NW1 1AT UK","The Francis Crick Institute, 1 Midland Road, London, NW1 1AT, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Francis Crick Institute, 1 Midland Road, London, NW1 1AT UK","institution_ids":["https://openalex.org/I2801081054"]},{"raw_affiliation_string":"The Francis Crick Institute, 1 Midland Road, London, NW1 1AT, UK","institution_ids":["https://openalex.org/I2801081054"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032971510","display_name":"Jason H. Moore","orcid":"https://orcid.org/0000-0002-5015-1099"},"institutions":[{"id":"https://openalex.org/I4210106998","display_name":"Medical Diagnostic Laboratories (United States)","ror":"https://ror.org/01gjnjy30","country_code":"US","type":"company","lineage":["https://openalex.org/I4210106998"]},{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jason Moore","raw_affiliation_strings":["Institute of Biomedical Informatics, University of Pennsylvania, Richards Medical Research Laboratories, 3700 Hamilton Walk, Philadelphia, 19104 USA","Institute of Biomedical Informatics, University of Pennsylvania, Richards Medical Research Laboratories, 3700 Hamilton Walk, Philadelphia, 19104, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Biomedical Informatics, University of Pennsylvania, Richards Medical Research Laboratories, 3700 Hamilton Walk, Philadelphia, 19104 USA","institution_ids":["https://openalex.org/I4210106998"]},{"raw_affiliation_string":"Institute of Biomedical Informatics, University of Pennsylvania, Richards Medical Research Laboratories, 3700 Hamilton Walk, Philadelphia, 19104, USA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101881419","display_name":"Harry Hemingway","orcid":"https://orcid.org/0000-0003-2279-0624"},"institutions":[{"id":"https://openalex.org/I4210143902","display_name":"Farr Institute","ror":"https://ror.org/0585r9546","country_code":"GB","type":"education","lineage":["https://openalex.org/I4210143902"]},{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Harry Hemingway","raw_affiliation_strings":["Farr Institute of Health Informatics Research, 222 Euston Road, London, UK","Institute of Health Informatics, University College London, 222 Euston Road, London, NW1 2DA UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Farr Institute of Health Informatics Research, 222 Euston Road, London, UK","institution_ids":["https://openalex.org/I4210143902"]},{"raw_affiliation_string":"Institute of Health Informatics, University College London, 222 Euston Road, London, NW1 2DA UK","institution_ids":["https://openalex.org/I45129253"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5022288501","display_name":"Liam Smeeth","orcid":"https://orcid.org/0000-0002-9168-6022"},"institutions":[{"id":"https://openalex.org/I124357947","display_name":"University of London","ror":"https://ror.org/04cw6st05","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947"]},{"id":"https://openalex.org/I4210089966","display_name":"London School of Hygiene & Tropical Medicine","ror":"https://ror.org/00a0jsq62","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I4210089966"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Liam Smeeth","raw_affiliation_strings":["EHR Research Group, Department of Non-communicable Disease Epidemiology, London School of Hygiene and Tropical Medicine, Keppel Streeet, London, WC1E 7HT UK","EHR Research Group, Department of Non-communicable Disease Epidemiology, London School of Hygiene and Tropical Medicine, Keppel Streeet, London, WC1E 7HT, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"EHR Research Group, Department of Non-communicable Disease Epidemiology, London School of Hygiene and Tropical Medicine, Keppel Streeet, London, WC1E 7HT UK","institution_ids":["https://openalex.org/I124357947","https://openalex.org/I4210089966"]},{"raw_affiliation_string":"EHR Research Group, Department of Non-communicable Disease Epidemiology, London School of Hygiene and Tropical Medicine, Keppel Streeet, London, WC1E 7HT, UK","institution_ids":["https://openalex.org/I4210089966"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5073010916"],"corresponding_institution_ids":["https://openalex.org/I4210143902","https://openalex.org/I45129253"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1539,"currency":"EUR","value_usd":1659},"fwci":12.5094,"has_fulltext":true,"cited_by_count":38,"citation_normalized_percentile":{"value":0.98308693,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"10","issue":"1","first_page":"31","last_page":"31"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.7346000075340271,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.7346000075340271,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.09619999676942825,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.04830000177025795,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/health-records","display_name":"Health records","score":0.6626971364021301},{"id":"https://openalex.org/keywords/reproducibility","display_name":"Reproducibility","score":0.6369103789329529},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5384222865104675},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.49443745613098145},{"id":"https://openalex.org/keywords/electronic-health-record","display_name":"Electronic health record","score":0.42630505561828613},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3528241217136383},{"id":"https://openalex.org/keywords/health-care","display_name":"Health care","score":0.2661961019039154},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.1760157346725464},{"id":"https://openalex.org/keywords/political-science","display_name":"Political science","score":0.14174911379814148},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.10644811391830444}],"concepts":[{"id":"https://openalex.org/C3019952477","wikidata":"https://www.wikidata.org/wiki/Q1324077","display_name":"Health records","level":3,"score":0.6626971364021301},{"id":"https://openalex.org/C9893847","wikidata":"https://www.wikidata.org/wiki/Q1425625","display_name":"Reproducibility","level":2,"score":0.6369103789329529},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5384222865104675},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.49443745613098145},{"id":"https://openalex.org/C3020144179","wikidata":"https://www.wikidata.org/wiki/Q10871684","display_name":"Electronic health record","level":3,"score":0.42630505561828613},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3528241217136383},{"id":"https://openalex.org/C160735492","wikidata":"https://www.wikidata.org/wiki/Q31207","display_name":"Health care","level":2,"score":0.2661961019039154},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.1760157346725464},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.14174911379814148},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.10644811391830444},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0}],"mesh":[],"locations_count":8,"locations":[{"id":"doi:10.1186/s13040-017-0151-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13040-017-0151-7","pdf_url":"https://biodatamining.biomedcentral.com/track/pdf/10.1186/s13040-017-0151-7","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},{"id":"pmid:28912836","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28912836","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData mining","raw_type":null},{"id":"pmh:oai:researchonline.lshtm.ac.uk:4398441","is_oa":false,"landing_page_url":"https://orcid.org/0000-0001-9612-7791>","pdf_url":null,"source":{"id":"https://openalex.org/S4306402527","display_name":"LSHTM Research Online (London School of Hygiene and Tropical Medicine)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210089966","host_organization_name":"London School of Hygiene & Tropical Medicine","host_organization_lineage":["https://openalex.org/I4210089966"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"PeerReviewed"},{"id":"pmh:oai:figshare.com:article/15188157","is_oa":true,"landing_page_url":null,"pdf_url":"https://figshare.com/articles/journal_contribution/Methods_for_enhancing_the_reproducibility_of_biomedical_research_findings_using_electronic_health_records/15188157","source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:8bdbf81417224e5cbb3a0471e671747c","is_oa":true,"landing_page_url":"https://doaj.org/article/8bdbf81417224e5cbb3a0471e671747c","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BioData Mining, Vol 10, Iss 1, Pp 1-19 (2017)","raw_type":"article"},{"id":"pmh:oai:eprints.ucl.ac.uk.OAI2:1574477","is_oa":false,"landing_page_url":"https://discovery.ucl.ac.uk/id/eprint/1574477/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400024","display_name":"UCL Discovery (University College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I45129253","host_organization_name":"University College London","host_organization_lineage":["https://openalex.org/I45129253"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"   BioData Mining , 10     , Article 31. (2017)      ","raw_type":"Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:5594436","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5594436","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BioData Min","raw_type":"Text"},{"id":"doi:10.25418/crick.15188157.v1","is_oa":true,"landing_page_url":"https://doi.org/10.25418/crick.15188157.v1","pdf_url":null,"source":{"id":"https://openalex.org/S7407051354","display_name":"The Francis Crick Institute","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.1186/s13040-017-0151-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13040-017-0151-7","pdf_url":"https://biodatamining.biomedcentral.com/track/pdf/10.1186/s13040-017-0151-7","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1877862647","display_name":null,"funder_award_id":"MR/K006584/1","funder_id":"https://openalex.org/F4320311106","funder_display_name":"National Institute for Social Care and Health Research"},{"id":"https://openalex.org/G205952512","display_name":"Centre for Health service and Academic Partnership in Translational eHealth Research (CHAPTER)","funder_award_id":"MR/K006584/1","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G2107972360","display_name":null,"funder_award_id":"MR/K006584/1","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G2775032600","display_name":null,"funder_award_id":"FC001110","funder_id":"https://openalex.org/F4320319985","funder_display_name":"Cancer Research UK"},{"id":"https://openalex.org/G3335867693","display_name":null,"funder_award_id":"MR/K006584/1","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"},{"id":"https://openalex.org/G3377197684","display_name":null,"funder_award_id":"RP-PG-0407-10314","funder_id":"https://openalex.org/F4320319990","funder_display_name":"National Institute for Health and Care Research"},{"id":"https://openalex.org/G4225955231","display_name":null,"funder_award_id":"FC001110","funder_id":"https://openalex.org/F4320312060","funder_display_name":"Francis Crick Institute"},{"id":"https://openalex.org/G4457630332","display_name":null,"funder_award_id":"K006584/1","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G4540300644","display_name":null,"funder_award_id":"WT082178","funder_id":"https://openalex.org/F4320319985","funder_display_name":"Cancer Research UK"},{"id":"https://openalex.org/G5071957832","display_name":"Higher resolution cardiovascular epidemiology: unique insights from linking the national cardiac event register with primary care records and highly phenotyped cohorts.","funder_award_id":"086091","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"},{"id":"https://openalex.org/G5356590179","display_name":null,"funder_award_id":"G0902393","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G5528113895","display_name":null,"funder_award_id":"FC001110, K006584/1, G0902393/99558, G0902393/99558","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G6102925208","display_name":null,"funder_award_id":"RP-PG-0407\u201310314","funder_id":"https://openalex.org/F4320319990","funder_display_name":"National Institute for Health and Care Research"},{"id":"https://openalex.org/G7831950325","display_name":null,"funder_award_id":"FC001110","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G792800632","display_name":null,"funder_award_id":"WT082178","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"},{"id":"https://openalex.org/G8057480389","display_name":null,"funder_award_id":"G0902393/99558","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G8129234038","display_name":null,"funder_award_id":"FC001110","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"},{"id":"https://openalex.org/G8974814185","display_name":null,"funder_award_id":"086091/Z/08/Z","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"},{"id":"https://openalex.org/G909459503","display_name":null,"funder_award_id":"086091/Z/08/Z, FC001110, WT082178","funder_id":"https://openalex.org/F4320307874","funder_display_name":"Wellcome"}],"funders":[{"id":"https://openalex.org/F4320307874","display_name":"Wellcome","ror":"https://ror.org/029chgv08"},{"id":"https://openalex.org/F4320311106","display_name":"National Institute for Social Care and Health Research","ror":"https://ror.org/03w4jzj90"},{"id":"https://openalex.org/F4320311904","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08"},{"id":"https://openalex.org/F4320312060","display_name":"Francis Crick Institute","ror":"https://ror.org/04tnbqb63"},{"id":"https://openalex.org/F4320319985","display_name":"Cancer Research UK","ror":"https://ror.org/054225q67"},{"id":"https://openalex.org/F4320319990","display_name":"National Institute for Health and Care Research","ror":"https://ror.org/0187kwz08"},{"id":"https://openalex.org/F4320319992","display_name":"British Heart Foundation","ror":"https://ror.org/02wdwnk04"},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"},{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"},{"id":"https://openalex.org/F4320334630","display_name":"Economic and Social Research Council","ror":"https://ror.org/03n0ht308"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2755621310.pdf","grobid_xml":"https://content.openalex.org/works/W2755621310.grobid-xml"},"referenced_works_count":79,"referenced_works":["https://openalex.org/W1428154031","https://openalex.org/W1520411860","https://openalex.org/W1863753810","https://openalex.org/W2013434113","https://openalex.org/W2015940760","https://openalex.org/W2027867013","https://openalex.org/W2034717157","https://openalex.org/W2035251626","https://openalex.org/W2036318837","https://openalex.org/W2052363833","https://openalex.org/W2054251921","https://openalex.org/W2060427373","https://openalex.org/W2076652359","https://openalex.org/W2078317138","https://openalex.org/W2079336662","https://openalex.org/W2082704080","https://openalex.org/W2090469606","https://openalex.org/W2092431575","https://openalex.org/W2096435507","https://openalex.org/W2097183694","https://openalex.org/W2099846538","https://openalex.org/W2100599058","https://openalex.org/W2101364543","https://openalex.org/W2104279568","https://openalex.org/W2110417468","https://openalex.org/W2112599594","https://openalex.org/W2113944334","https://openalex.org/W2113952938","https://openalex.org/W2114850508","https://openalex.org/W2120787570","https://openalex.org/W2121382432","https://openalex.org/W2123783513","https://openalex.org/W2130698371","https://openalex.org/W2134119432","https://openalex.org/W2134709869","https://openalex.org/W2142071150","https://openalex.org/W2143530464","https://openalex.org/W2143964357","https://openalex.org/W2144981148","https://openalex.org/W2146437022","https://openalex.org/W2150180559","https://openalex.org/W2150561315","https://openalex.org/W2160697532","https://openalex.org/W2161645441","https://openalex.org/W2163278718","https://openalex.org/W2163832616","https://openalex.org/W2166378641","https://openalex.org/W2169428949","https://openalex.org/W2228927609","https://openalex.org/W2295810158","https://openalex.org/W2315740346","https://openalex.org/W2331384579","https://openalex.org/W2342082360","https://openalex.org/W2396881363","https://openalex.org/W2404369708","https://openalex.org/W2414283705","https://openalex.org/W2414783722","https://openalex.org/W2522038241","https://openalex.org/W2531161810","https://openalex.org/W2560096094","https://openalex.org/W2564505779","https://openalex.org/W2567940875","https://openalex.org/W2589063842","https://openalex.org/W2590591016","https://openalex.org/W2594542816","https://openalex.org/W2597357676","https://openalex.org/W2599076725","https://openalex.org/W2599457655","https://openalex.org/W2790916396","https://openalex.org/W2912430686","https://openalex.org/W2953134824","https://openalex.org/W2962766845","https://openalex.org/W2963338341","https://openalex.org/W4242395378","https://openalex.org/W4249665717","https://openalex.org/W4285719527","https://openalex.org/W4294116629","https://openalex.org/W4296471858","https://openalex.org/W6669636941"],"related_works":["https://openalex.org/W187932805","https://openalex.org/W4392490004","https://openalex.org/W1641026212","https://openalex.org/W2911982698","https://openalex.org/W2323588885","https://openalex.org/W3047677938","https://openalex.org/W2087134418","https://openalex.org/W2078646730","https://openalex.org/W4312053962","https://openalex.org/W176477701"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,234],"ability":[2],"of":[3,18,29,57,79,124,164,181,203,226,236,254],"external":[4],"investigators":[5],"to":[6,50,94,128,144,177,190,242],"reproduce":[7],"published":[8],"scientific":[9,97,171,204],"findings":[10,98],"is":[11,44,92],"critical":[12,93],"for":[13,87,126],"the":[14,22,51,54,74,138,179,201,222,252],"evaluation":[15],"and":[16,39,63,77,104,113,141,151,160,166,187,208,221,224,230,245,250],"validation":[17],"biomedical":[19,255],"research":[20,31,88,132,182,256],"by":[21,106,120],"wider":[23],"community.":[24],"However,":[25],"a":[26,117,122,162,195],"substantial":[27],"proportion":[28],"health":[30,34,81,185],"using":[32,183,257],"electronic":[33,80,184],"records":[35,186],"(EHR),":[36],"data":[37,59,83,101,228,260],"collected":[38],"generated":[40],"during":[41],"clinical":[42],"care,":[43],"potentially":[45],"not":[46,67],"reproducible":[47,103],"mainly":[48],"due":[49],"fact":[52],"that":[53,96,173],"implementation":[55],"details":[56],"most":[58],"preprocessing,":[60],"cleaning,":[61],"phenotyping":[62],"analysis":[64],"approaches":[65,143,193,238],"are":[66,102],"systematically":[68,243],"made":[69,85],"available":[70,86],"or":[71],"shared.":[72],"With":[73],"complexity,":[75],"volume":[76],"variety":[78],"record":[82],"sources":[84],"steadily":[89],"increasing,":[90],"it":[91],"ensure":[95],"from":[99],"EHR":[100,247],"replicable":[105],"researchers.":[107],"Reporting":[108],"guidelines,":[109],"such":[110,146,210,237,258],"as":[111,211],"RECORD":[112],"STROBE,":[114],"have":[115],"set":[116],"solid":[118],"foundation":[119],"recommending":[121],"series":[123,163],"items":[125],"researchers":[127,189],"include":[129],"in":[130,148,169,194],"their":[131],"outputs.":[133],"Researchers":[134],"however":[135],"often":[136],"lack":[137],"technical":[139],"tools":[140,167],"methodological":[142],"actuate":[145],"recommendations":[147],"an":[149],"efficient":[150],"sustainable":[152],"manner.":[153,197],"RESULTS:":[154],"In":[155],"this":[156],"paper,":[157],"we":[158,199],"review":[159],"propose":[161],"methods":[165],"utilized":[168],"adjunct":[170],"disciplines":[172],"can":[174],"be":[175],"used":[176],"enhance":[178],"reproducibility":[180,253],"enable":[188,240],"report":[191],"analytical":[192,231,248],"transparent":[196],"Specifically,":[198],"discuss":[200],"adoption":[202,235],"software":[205],"engineering":[206],"principles":[207],"best-practices":[209],"test-driven":[212],"development,":[213],"source":[214],"code":[215],"revision":[216],"control":[217],"systems,":[218],"literate":[219],"programming":[220],"standardization":[223],"re-use":[225],"common":[227],"management":[229],"approaches.":[232],"CONCLUSION:":[233],"will":[239],"scientists":[241],"document":[244],"share":[246],"workflows":[249],"increase":[251],"complex":[259],"sources.":[261]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
