{"id":"https://openalex.org/W2727539851","doi":"https://doi.org/10.1186/s13040-017-0143-7","title":"epiACO - a method for identifying epistasis based on ant Colony optimization algorithm","display_name":"epiACO - a method for identifying epistasis based on ant Colony optimization algorithm","publication_year":2017,"publication_date":"2017-07-06","ids":{"openalex":"https://openalex.org/W2727539851","doi":"https://doi.org/10.1186/s13040-017-0143-7","mag":"2727539851","pmid":"https://pubmed.ncbi.nlm.nih.gov/28694848"},"language":"en","primary_location":{"id":"doi:10.1186/s13040-017-0143-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13040-017-0143-7","pdf_url":"https://biodatamining.biomedcentral.com/track/pdf/10.1186/s13040-017-0143-7","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://biodatamining.biomedcentral.com/track/pdf/10.1186/s13040-017-0143-7","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066144774","display_name":"Yingxia Sun","orcid":"https://orcid.org/0000-0003-3040-6899"},"institutions":[{"id":"https://openalex.org/I202126657","display_name":"Qufu Normal University","ror":"https://ror.org/03ceheh96","country_code":"CN","type":"education","lineage":["https://openalex.org/I202126657"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yingxia Sun","raw_affiliation_strings":["School of Information Science and Engineering, Qufu Normal University, Rizhao, 276826 China","School of Information Science and Engineering, Qufu Normal University, Rizhao, 276826, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Science and Engineering, Qufu Normal University, Rizhao, 276826 China","institution_ids":["https://openalex.org/I202126657"]},{"raw_affiliation_string":"School of Information Science and Engineering, Qufu Normal University, Rizhao, 276826, China","institution_ids":["https://openalex.org/I202126657"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007539735","display_name":"Junliang Shang","orcid":"https://orcid.org/0000-0002-8488-2228"},"institutions":[{"id":"https://openalex.org/I202126657","display_name":"Qufu Normal University","ror":"https://ror.org/03ceheh96","country_code":"CN","type":"education","lineage":["https://openalex.org/I202126657"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Junliang Shang","raw_affiliation_strings":["Institute of Network Computing, Qufu Normal University, Rizhao, 276826 China","School of Information Science and Engineering, Qufu Normal University, Rizhao, 276826 China","School of Information Science and Engineering, Qufu Normal University, Rizhao, 276826, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Network Computing, Qufu Normal University, Rizhao, 276826 China","institution_ids":["https://openalex.org/I202126657"]},{"raw_affiliation_string":"School of Information Science and Engineering, Qufu Normal University, Rizhao, 276826 China","institution_ids":["https://openalex.org/I202126657"]},{"raw_affiliation_string":"School of Information Science and Engineering, Qufu Normal University, Rizhao, 276826, China","institution_ids":["https://openalex.org/I202126657"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073144090","display_name":"Jin\u2010Xing Liu","orcid":"https://orcid.org/0000-0001-6104-2149"},"institutions":[{"id":"https://openalex.org/I202126657","display_name":"Qufu Normal University","ror":"https://ror.org/03ceheh96","country_code":"CN","type":"education","lineage":["https://openalex.org/I202126657"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jin-Xing Liu","raw_affiliation_strings":["School of Information Science and Engineering, Qufu Normal University, Rizhao, 276826 China","School of Information Science and Engineering, Qufu Normal University, Rizhao, 276826, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Science and Engineering, Qufu Normal University, Rizhao, 276826 China","institution_ids":["https://openalex.org/I202126657"]},{"raw_affiliation_string":"School of Information Science and Engineering, Qufu Normal University, Rizhao, 276826, China","institution_ids":["https://openalex.org/I202126657"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101516800","display_name":"Shengjun Li","orcid":"https://orcid.org/0000-0002-4460-1559"},"institutions":[{"id":"https://openalex.org/I202126657","display_name":"Qufu Normal University","ror":"https://ror.org/03ceheh96","country_code":"CN","type":"education","lineage":["https://openalex.org/I202126657"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shengjun Li","raw_affiliation_strings":["School of Information Science and Engineering, Qufu Normal University, Rizhao, 276826 China","School of Information Science and Engineering, Qufu Normal University, Rizhao, 276826, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Science and Engineering, Qufu Normal University, Rizhao, 276826 China","institution_ids":["https://openalex.org/I202126657"]},{"raw_affiliation_string":"School of Information Science and Engineering, Qufu Normal University, Rizhao, 276826, China","institution_ids":["https://openalex.org/I202126657"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5064185915","display_name":"Chun-Hou Zheng","orcid":"https://orcid.org/0000-0002-2695-1926"},"institutions":[{"id":"https://openalex.org/I143868143","display_name":"Anhui University","ror":"https://ror.org/05th6yx34","country_code":"CN","type":"education","lineage":["https://openalex.org/I143868143"]},{"id":"https://openalex.org/I202126657","display_name":"Qufu Normal University","ror":"https://ror.org/03ceheh96","country_code":"CN","type":"education","lineage":["https://openalex.org/I202126657"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chun-Hou Zheng","raw_affiliation_strings":["College of Electrical Engineering and Automation, Anhui University, Hefei, 230601 China","School of Information Science and Engineering, Qufu Normal University, Rizhao, 276826 China","College of Electrical Engineering and Automation, Anhui University, Hefei, 230601, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Electrical Engineering and Automation, Anhui University, Hefei, 230601 China","institution_ids":["https://openalex.org/I143868143"]},{"raw_affiliation_string":"School of Information Science and Engineering, Qufu Normal University, Rizhao, 276826 China","institution_ids":["https://openalex.org/I202126657"]},{"raw_affiliation_string":"College of Electrical Engineering and Automation, Anhui University, Hefei, 230601, China","institution_ids":["https://openalex.org/I143868143"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5007539735","https://openalex.org/A5073144090"],"corresponding_institution_ids":["https://openalex.org/I202126657"],"apc_list":{"value":2490,"currency":"USD","value_usd":2490},"apc_paid":{"value":2490,"currency":"USD","value_usd":2490},"fwci":6.1112,"has_fulltext":true,"cited_by_count":68,"citation_normalized_percentile":{"value":0.96879824,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"10","issue":"1","first_page":"23","last_page":"23"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10100","display_name":"Metaheuristic Optimization Algorithms Research","score":0.1826000064611435,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10100","display_name":"Metaheuristic Optimization Algorithms Research","score":0.1826000064611435,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11396","display_name":"Artificial Intelligence in Healthcare","score":0.08209999650716782,"subfield":{"id":"https://openalex.org/subfields/3605","display_name":"Health Information Management"},"field":{"id":"https://openalex.org/fields/36","display_name":"Health Professions"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.07339999824762344,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/epistasis","display_name":"Epistasis","score":0.8328410983085632},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7081378698348999},{"id":"https://openalex.org/keywords/ant-colony-optimization-algorithms","display_name":"Ant colony optimization algorithms","score":0.5743285417556763},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.5740975141525269},{"id":"https://openalex.org/keywords/path","display_name":"Path (computing)","score":0.5484623312950134},{"id":"https://openalex.org/keywords/probabilistic-logic","display_name":"Probabilistic logic","score":0.4228714108467102},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.395303338766098},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3743867576122284},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.36480629444122314},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13759082555770874},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.0997239351272583}],"concepts":[{"id":"https://openalex.org/C61727976","wikidata":"https://www.wikidata.org/wiki/Q751748","display_name":"Epistasis","level":3,"score":0.8328410983085632},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7081378698348999},{"id":"https://openalex.org/C40128228","wikidata":"https://www.wikidata.org/wiki/Q460851","display_name":"Ant colony optimization algorithms","level":2,"score":0.5743285417556763},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.5740975141525269},{"id":"https://openalex.org/C2777735758","wikidata":"https://www.wikidata.org/wiki/Q817765","display_name":"Path (computing)","level":2,"score":0.5484623312950134},{"id":"https://openalex.org/C49937458","wikidata":"https://www.wikidata.org/wiki/Q2599292","display_name":"Probabilistic logic","level":2,"score":0.4228714108467102},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.395303338766098},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3743867576122284},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.36480629444122314},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13759082555770874},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0997239351272583},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/s13040-017-0143-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13040-017-0143-7","pdf_url":"https://biodatamining.biomedcentral.com/track/pdf/10.1186/s13040-017-0143-7","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},{"id":"pmid:28694848","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28694848","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData mining","raw_type":null},{"id":"pmh:oai:doaj.org/article:f1ebbb1210784b88a46dc5899f6aae99","is_oa":true,"landing_page_url":"https://doaj.org/article/f1ebbb1210784b88a46dc5899f6aae99","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BioData Mining, Vol 10, Iss 1, Pp 1-17 (2017)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:4349981","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5500974","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13040-017-0143-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13040-017-0143-7","pdf_url":"https://biodatamining.biomedcentral.com/track/pdf/10.1186/s13040-017-0143-7","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5860415692","display_name":"\u9762\u5411\u764c\u75c7\u57fa\u56e0\u7ec4\u56fe\u8c31\u6570\u636e\u5206\u6790\u7684\u7a00\u758f\u77e9\u9635\u5206\u89e3\u65b9\u6cd5\u7814\u7a76","funder_award_id":"61572284","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6524972921","display_name":null,"funder_award_id":"61502272","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7551747871","display_name":null,"funder_award_id":"61572283","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320316326","display_name":"Qufu Normal University","ror":"https://ror.org/03ceheh96"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2727539851.pdf","grobid_xml":"https://content.openalex.org/works/W2727539851.grobid-xml"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W177309949","https://openalex.org/W1822695366","https://openalex.org/W1965539518","https://openalex.org/W1974510435","https://openalex.org/W1979254666","https://openalex.org/W1980771638","https://openalex.org/W1983675274","https://openalex.org/W1997744129","https://openalex.org/W2008906462","https://openalex.org/W2015523078","https://openalex.org/W2016092929","https://openalex.org/W2016389876","https://openalex.org/W2016393220","https://openalex.org/W2019208141","https://openalex.org/W2041170649","https://openalex.org/W2046918131","https://openalex.org/W2053337262","https://openalex.org/W2058514166","https://openalex.org/W2067523962","https://openalex.org/W2075059455","https://openalex.org/W2076011171","https://openalex.org/W2083246944","https://openalex.org/W2083944388","https://openalex.org/W2085088301","https://openalex.org/W2088100205","https://openalex.org/W2098497945","https://openalex.org/W2101350555","https://openalex.org/W2108352360","https://openalex.org/W2120423544","https://openalex.org/W2131878646","https://openalex.org/W2140221871","https://openalex.org/W2152905639","https://openalex.org/W2154053567","https://openalex.org/W2154572047","https://openalex.org/W2155781289","https://openalex.org/W2170482677","https://openalex.org/W2170990329","https://openalex.org/W2175518449","https://openalex.org/W2242514529","https://openalex.org/W2506176420","https://openalex.org/W3104824402","https://openalex.org/W3151658902"],"related_works":["https://openalex.org/W1547817677","https://openalex.org/W2023460495","https://openalex.org/W2615678788","https://openalex.org/W1967902778","https://openalex.org/W3083099115","https://openalex.org/W1981509636","https://openalex.org/W4235217192","https://openalex.org/W3035525216","https://openalex.org/W2099041096","https://openalex.org/W4285338599"],"abstract_inverted_index":{"BACKGROUND:":[0],"Identifying":[1],"epistasis":[2,183],"or":[3],"epistatic":[4,39],"interactions,":[5,40],"which":[6],"refer":[7],"to":[8,19,24,42,65,93,108,120,126,189],"nonlinear":[9],"interaction":[10],"effects":[11],"of":[12,58,98,122,141,171],"single":[13],"nucleotide":[14],"polymorphisms":[15],"(SNPs),":[16],"is":[17,51,106,179],"essential":[18],"understand":[20],"disease":[21],"susceptibility":[22],"and":[23,45,62,67,74,86,100,117,143,157,166,184],"detect":[25],"genetic":[26],"architectures":[27],"underlying":[28],"complex":[29],"diseases.":[30],"Though":[31],"many":[32],"works":[33],"have":[34],"been":[35],"done":[36],"for":[37,136],"identifying":[38,137,182],"due":[41],"their":[43],"methodological":[44],"computational":[46],"challenges,":[47],"the":[48,56,75,114,123],"algorithmic":[49],"development":[50],"still":[52],"ongoing.":[53],"RESULTS:":[54],"leverages":[55],"advantages":[57],"both":[59,162],"mutual":[60],"information":[61],"Bayesian":[63],"network":[64],"effectively":[66],"efficiently":[68],"measure":[69],"associations":[70],"between":[71],"SNP":[72],"combinations":[73],"phenotype.":[76],"Two":[77],"path":[78,83,88],"selection":[79,84,89],"strategies,":[80],"i.e.,":[81],"probabilistic":[82],"strategy":[85,105],"stochastic":[87],"strategy,":[90],"are":[91,159],"provided":[92],"adaptively":[94],"guide":[95],"ant":[96],"behaviors":[97],"exploration":[99],"exploitation.":[101],"The":[102],"memory":[103],"based":[104],"designed":[107],"retain":[109],"candidate":[110,129],"solutions":[111,121],"found":[112],"in":[113,181],"previous":[115],"iterations,":[116],"compare":[118],"them":[119],"current":[124],"iteration":[125],"generate":[127],"new":[128],"solutions,":[130],"yielding":[131],"a":[132,167],"more":[133],"accurate":[134],"way":[135],"epistasis.":[138],"CONCLUSIONS:":[139],"Experiments":[140],"epiACO":[142,178],"its":[144],"comparison":[145],"with":[146],"other":[147],"recent":[148],"methods":[149],"epiMODE,":[150],"TEAM,":[151],"BOOST,":[152],"SNPRuler,":[153],"AntEpiSeeker,":[154],"AntMiner,":[155],"MACOED,":[156],"IACO":[158],"performed":[160],"on":[161],"simulation":[163],"data":[164,169],"sets":[165],"real":[168],"set":[170],"age-related":[172],"macular":[173],"degeneration.":[174],"Results":[175],"show":[176],"that":[177],"promising":[180],"might":[185],"be":[186],"an":[187],"alternative":[188],"existing":[190],"methods.":[191]},"counts_by_year":[{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":15},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":9},{"year":2019,"cited_by_count":11},{"year":2018,"cited_by_count":7}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
