{"id":"https://openalex.org/W2608364608","doi":"https://doi.org/10.1186/s13040-017-0133-9","title":"Feature analysis for classification of trace fluorescent labeled protein crystallization images","display_name":"Feature analysis for classification of trace fluorescent labeled protein crystallization images","publication_year":2017,"publication_date":"2017-04-27","ids":{"openalex":"https://openalex.org/W2608364608","doi":"https://doi.org/10.1186/s13040-017-0133-9","mag":"2608364608","pmid":"https://pubmed.ncbi.nlm.nih.gov/28465724"},"language":"en","primary_location":{"id":"doi:10.1186/s13040-017-0133-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13040-017-0133-9","pdf_url":"https://biodatamining.biomedcentral.com/track/pdf/10.1186/s13040-017-0133-9","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://biodatamining.biomedcentral.com/track/pdf/10.1186/s13040-017-0133-9","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5088171262","display_name":"Madhav Sigdel","orcid":"https://orcid.org/0000-0001-6588-4909"},"institutions":[{"id":"https://openalex.org/I82495205","display_name":"University of Alabama in Huntsville","ror":"https://ror.org/02zsxwr40","country_code":"US","type":"education","lineage":["https://openalex.org/I82495205"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Madhav Sigdel","raw_affiliation_strings":["Computer Science Department, University of Alabama in Huntsville, Huntsville, 35899 Alabama USA","Computer Science Department, University of Alabama in Huntsville, Huntsville, 35899, Alabama, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science Department, University of Alabama in Huntsville, Huntsville, 35899 Alabama USA","institution_ids":[]},{"raw_affiliation_string":"Computer Science Department, University of Alabama in Huntsville, Huntsville, 35899, Alabama, USA","institution_ids":["https://openalex.org/I82495205"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014910767","display_name":"\u0130mren Din\u00e7","orcid":null},"institutions":[{"id":"https://openalex.org/I149292303","display_name":"Troy University","ror":"https://ror.org/029jj9438","country_code":"US","type":"education","lineage":["https://openalex.org/I149292303"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Imren Dinc","raw_affiliation_strings":["Computer Science Department, Troy University, Troy, 36082 Alabama USA","Computer Science Department, Troy University, Troy, 36082, Alabama, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science Department, Troy University, Troy, 36082 Alabama USA","institution_ids":[]},{"raw_affiliation_string":"Computer Science Department, Troy University, Troy, 36082, Alabama, USA","institution_ids":["https://openalex.org/I149292303"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103394256","display_name":"Madhu S. Sigdel","orcid":null},"institutions":[{"id":"https://openalex.org/I82495205","display_name":"University of Alabama in Huntsville","ror":"https://ror.org/02zsxwr40","country_code":"US","type":"education","lineage":["https://openalex.org/I82495205"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Madhu S. Sigdel","raw_affiliation_strings":["Computer Science Department, University of Alabama in Huntsville, Huntsville, 35899 Alabama USA","Computer Science Department, University of Alabama in Huntsville, Huntsville, 35899, Alabama, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science Department, University of Alabama in Huntsville, Huntsville, 35899 Alabama USA","institution_ids":[]},{"raw_affiliation_string":"Computer Science Department, University of Alabama in Huntsville, Huntsville, 35899, Alabama, USA","institution_ids":["https://openalex.org/I82495205"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076463089","display_name":"Semih Din\u00e7","orcid":"https://orcid.org/0000-0002-6453-6774"},"institutions":[{"id":"https://openalex.org/I82495205","display_name":"University of Alabama in Huntsville","ror":"https://ror.org/02zsxwr40","country_code":"US","type":"education","lineage":["https://openalex.org/I82495205"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Semih Dinc","raw_affiliation_strings":["Computer Science Department, University of Alabama in Huntsville, Huntsville, 35899 Alabama USA","Computer Science Department, University of Alabama in Huntsville, Huntsville, 35899, Alabama, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science Department, University of Alabama in Huntsville, Huntsville, 35899 Alabama USA","institution_ids":[]},{"raw_affiliation_string":"Computer Science Department, University of Alabama in Huntsville, Huntsville, 35899, Alabama, USA","institution_ids":["https://openalex.org/I82495205"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020670546","display_name":"Marc L. Pusey","orcid":"https://orcid.org/0000-0002-4312-8448"},"institutions":[{"id":"https://openalex.org/I4210129945","display_name":"iXpressGenes (United States)","ror":"https://ror.org/03mz5a533","country_code":"US","type":"company","lineage":["https://openalex.org/I4210129945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Marc L. Pusey","raw_affiliation_strings":["iXpressGenes, Inc., 601 Genome Way, Huntsville, 35806 Alabama USA","iXpressGenes, Inc., 601 Genome Way, Huntsville, 35806, Alabama, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"iXpressGenes, Inc., 601 Genome Way, Huntsville, 35806 Alabama USA","institution_ids":[]},{"raw_affiliation_string":"iXpressGenes, Inc., 601 Genome Way, Huntsville, 35806, Alabama, USA","institution_ids":["https://openalex.org/I4210129945"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5070184068","display_name":"Ramazan Ayg\u00fcn","orcid":"https://orcid.org/0000-0001-7244-7475"},"institutions":[{"id":"https://openalex.org/I82495205","display_name":"University of Alabama in Huntsville","ror":"https://ror.org/02zsxwr40","country_code":"US","type":"education","lineage":["https://openalex.org/I82495205"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ramazan S. Aygun","raw_affiliation_strings":["Computer Science Department, University of Alabama in Huntsville, Huntsville, 35899 Alabama USA","Computer Science Department, University of Alabama in Huntsville, Huntsville, 35899, Alabama, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science Department, University of Alabama in Huntsville, Huntsville, 35899 Alabama USA","institution_ids":[]},{"raw_affiliation_string":"Computer Science Department, University of Alabama in Huntsville, Huntsville, 35899, Alabama, USA","institution_ids":["https://openalex.org/I82495205"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5088171262"],"corresponding_institution_ids":["https://openalex.org/I82495205"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.2709,"has_fulltext":true,"cited_by_count":20,"citation_normalized_percentile":{"value":0.776289,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"10","issue":"1","first_page":"14","last_page":"14"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.6244000196456909,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.6244000196456909,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.14470000565052032,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11881","display_name":"Crystallization and Solubility Studies","score":0.043699998408555984,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/trace","display_name":"TRACE (psycholinguistics)","score":0.7569886445999146},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.7199077606201172},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6390209197998047},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.5627801418304443},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.48741772770881653},{"id":"https://openalex.org/keywords/fluorescence","display_name":"Fluorescence","score":0.4809957444667816},{"id":"https://openalex.org/keywords/crystallization","display_name":"Crystallization","score":0.41758108139038086},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3512539267539978},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.21057650446891785},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.07019352912902832},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.0689045786857605}],"concepts":[{"id":"https://openalex.org/C75291252","wikidata":"https://www.wikidata.org/wiki/Q1315756","display_name":"TRACE (psycholinguistics)","level":2,"score":0.7569886445999146},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.7199077606201172},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6390209197998047},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.5627801418304443},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.48741772770881653},{"id":"https://openalex.org/C91881484","wikidata":"https://www.wikidata.org/wiki/Q191807","display_name":"Fluorescence","level":2,"score":0.4809957444667816},{"id":"https://openalex.org/C203036418","wikidata":"https://www.wikidata.org/wiki/Q284256","display_name":"Crystallization","level":2,"score":0.41758108139038086},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3512539267539978},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.21057650446891785},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.07019352912902832},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0689045786857605},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/s13040-017-0133-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13040-017-0133-9","pdf_url":"https://biodatamining.biomedcentral.com/track/pdf/10.1186/s13040-017-0133-9","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},{"id":"pmid:28465724","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28465724","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData mining","raw_type":null},{"id":"pmh:oai:doaj.org/article:762dba59f3f840a7a0410f8b06c0f995","is_oa":true,"landing_page_url":"https://doaj.org/article/762dba59f3f840a7a0410f8b06c0f995","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BioData Mining, Vol 10, Iss 1, Pp 1-35 (2017)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:4262912","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5408444","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13040-017-0133-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13040-017-0133-9","pdf_url":"https://biodatamining.biomedcentral.com/track/pdf/10.1186/s13040-017-0133-9","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","score":0.7200000286102295,"id":"https://metadata.un.org/sdg/15"}],"awards":[{"id":"https://openalex.org/G3255377385","display_name":null,"funder_award_id":"GM090453","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2608364608.pdf","grobid_xml":"https://content.openalex.org/works/W2608364608.grobid-xml"},"referenced_works_count":44,"referenced_works":["https://openalex.org/W27523083","https://openalex.org/W284286657","https://openalex.org/W837527395","https://openalex.org/W1493836171","https://openalex.org/W1536343227","https://openalex.org/W1938740620","https://openalex.org/W1972740244","https://openalex.org/W1992052308","https://openalex.org/W2005913854","https://openalex.org/W2006446553","https://openalex.org/W2024959664","https://openalex.org/W2027468035","https://openalex.org/W2033725376","https://openalex.org/W2044465660","https://openalex.org/W2051046749","https://openalex.org/W2052578140","https://openalex.org/W2053700828","https://openalex.org/W2056165820","https://openalex.org/W2057245474","https://openalex.org/W2061928481","https://openalex.org/W2063386540","https://openalex.org/W2104241941","https://openalex.org/W2108205461","https://openalex.org/W2110102616","https://openalex.org/W2111308925","https://openalex.org/W2117438495","https://openalex.org/W2123363094","https://openalex.org/W2124005542","https://openalex.org/W2127086367","https://openalex.org/W2127227873","https://openalex.org/W2133059825","https://openalex.org/W2136036882","https://openalex.org/W2144940319","https://openalex.org/W2144981447","https://openalex.org/W2161738041","https://openalex.org/W2299868469","https://openalex.org/W2312315516","https://openalex.org/W2325324176","https://openalex.org/W2505754579","https://openalex.org/W2567719433","https://openalex.org/W2576928632","https://openalex.org/W3023058184","https://openalex.org/W3099514962","https://openalex.org/W6738852829"],"related_works":["https://openalex.org/W1975066220","https://openalex.org/W2361648762","https://openalex.org/W2385571654","https://openalex.org/W2751847288","https://openalex.org/W3021725558","https://openalex.org/W2371738293","https://openalex.org/W90756326","https://openalex.org/W2367136397","https://openalex.org/W4309673546","https://openalex.org/W2020184957"],"abstract_inverted_index":{"BACKGROUND:":[0],"Large":[1],"number":[2,32],"of":[3,16,22,26,33,47,67,111,116],"features":[4,34,44,190],"are":[5,84],"extracted":[6],"from":[7,80],"protein":[8],"crystallization":[9,28,77],"trial":[10],"images":[11,78],"to":[12,41,57,61,113,129,188,192],"improve":[13],"the":[14,20,27,58,63,108,136],"accuracy":[15,99,141],"classifiers":[17],"for":[18,76,107,142,179,196],"predicting":[19],"presence":[21,115],"crystals":[23,102],"or":[24],"phases":[25],"process.":[29],"The":[30,157],"excessive":[31],"and":[35,73,90,160],"computationally":[36],"intensive":[37],"image":[38,68,170],"processing":[39],"methods":[40],"extract":[42],"these":[43],"make":[45],"utilization":[46],"automated":[48],"classification":[49,64,74,112,148,161],"tools":[50],"on":[51,171],"stand-alone":[52,173],"computing":[53,174],"systems":[54],"inconvenient":[55],"due":[56],"required":[59],"time":[60,181],"complete":[62],"tasks.":[65],"Combinations":[66],"feature":[69,71,95,158],"sets,":[70],"reduction":[72],"techniques":[75],"benefiting":[79],"trace":[81],"fluorescence":[82],"labeling":[83],"investigated.":[85],"RESULTS:":[86],"thresholding,":[87],"graph":[88],"features,":[89],"histogram":[91],"features.":[92],"Using":[93],"this":[94],"set":[96],"combination,":[97],"96%":[98],"(without":[100],"misclassifying":[101],"as":[103],"non-crystals)":[104],"was":[105],"achieved":[106,151],"first":[109],"level":[110,138],"determine":[114],"crystals.":[117],"Since":[118],"missing":[119],"a":[120,131,172],"crystal":[121,144],"is":[122,127,177],"not":[123],"desired,":[124],"our":[125],"algorithm":[126],"adjusted":[128],"achieve":[130],"high":[132],"sensitivity":[133],"rate.":[134],"In":[135],"second":[137],"classification,":[139],"74.2%":[140],"(5-class)":[143],"sub-category":[145],"classification.":[146],"Best":[147],"rates":[149],"were":[150],"using":[152],"random":[153],"forest":[154],"classifier.":[155],"CONTRIBUTIONS:":[156],"extraction":[159],"could":[162],"be":[163],"completed":[164],"in":[165],"about":[166],"2":[167],"s":[168],"per":[169],"system,":[175],"which":[176],"suitable":[178],"real":[180],"analysis.":[182,198],"These":[183],"results":[184],"enable":[185],"research":[186],"groups":[187],"select":[189],"according":[191],"their":[193],"hardware":[194],"setups":[195],"real-time":[197]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":4},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":1}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
