{"id":"https://openalex.org/W2192776864","doi":"https://doi.org/10.1186/s13040-015-0072-2","title":"Network construction and structure detection with metagenomic count data","display_name":"Network construction and structure detection with metagenomic count data","publication_year":2015,"publication_date":"2015-06-01","ids":{"openalex":"https://openalex.org/W2192776864","doi":"https://doi.org/10.1186/s13040-015-0072-2","mag":"2192776864","pmid":"https://pubmed.ncbi.nlm.nih.gov/26692900"},"language":"en","primary_location":{"id":"doi:10.1186/s13040-015-0072-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13040-015-0072-2","pdf_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/s13040-015-0072-2","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/s13040-015-0072-2","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101443661","display_name":"Zhenqiu Liu","orcid":"https://orcid.org/0000-0003-1117-3946"},"institutions":[{"id":"https://openalex.org/I1282927834","display_name":"Cedars-Sinai Medical Center","ror":"https://ror.org/02pammg90","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1282927834"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Zhenqiu Liu","raw_affiliation_strings":["Samuel Oschin Comprehensive Cancer Institute, Cedars-Sinai Medical Center, Los Angeles, 90048 CA USA","Samuel Oschin Comprehensive Cancer Institute, Cedars-Sinai Medical Center, Los Angeles, 90048, CA, USA"],"affiliations":[{"raw_affiliation_string":"Samuel Oschin Comprehensive Cancer Institute, Cedars-Sinai Medical Center, Los Angeles, 90048 CA USA","institution_ids":[]},{"raw_affiliation_string":"Samuel Oschin Comprehensive Cancer Institute, Cedars-Sinai Medical Center, Los Angeles, 90048, CA, USA","institution_ids":["https://openalex.org/I1282927834"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091196188","display_name":"Shili Lin","orcid":"https://orcid.org/0000-0003-2467-4491"},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shili Lin","raw_affiliation_strings":["Department of Statistics, The Ohio State University, Columbus, 43210 OH USA","Department of Statistics, The Ohio State University, Columbus, 43210, OH, USA"],"affiliations":[{"raw_affiliation_string":"Department of Statistics, The Ohio State University, Columbus, 43210 OH USA","institution_ids":[]},{"raw_affiliation_string":"Department of Statistics, The Ohio State University, Columbus, 43210, OH, USA","institution_ids":["https://openalex.org/I52357470"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087391729","display_name":"Steven Piantadosi","orcid":"https://orcid.org/0000-0002-4409-9896"},"institutions":[{"id":"https://openalex.org/I1282927834","display_name":"Cedars-Sinai Medical Center","ror":"https://ror.org/02pammg90","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1282927834"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Steven Piantadosi","raw_affiliation_strings":["Samuel Oschin Comprehensive Cancer Institute, Cedars-Sinai Medical Center, Los Angeles, 90048 CA USA","Samuel Oschin Comprehensive Cancer Institute, Cedars-Sinai Medical Center, Los Angeles, 90048, CA, USA"],"affiliations":[{"raw_affiliation_string":"Samuel Oschin Comprehensive Cancer Institute, Cedars-Sinai Medical Center, Los Angeles, 90048 CA USA","institution_ids":[]},{"raw_affiliation_string":"Samuel Oschin Comprehensive Cancer Institute, Cedars-Sinai Medical Center, Los Angeles, 90048, CA, USA","institution_ids":["https://openalex.org/I1282927834"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5101443661"],"corresponding_institution_ids":["https://openalex.org/I1282927834"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.3018,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.62825389,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"8","issue":"1","first_page":"40","last_page":"40"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9936000108718872,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.8725485801696777},{"id":"https://openalex.org/keywords/count-data","display_name":"Count data","score":0.6505684852600098},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5948781371116638},{"id":"https://openalex.org/keywords/subnetwork","display_name":"Subnetwork","score":0.573822557926178},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5229185819625854},{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.5191023349761963},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4886665642261505},{"id":"https://openalex.org/keywords/network-analysis","display_name":"Network analysis","score":0.4408888518810272},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3240939676761627},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.25255286693573},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.19983601570129395},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.14376616477966309},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.14099296927452087},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.12919798493385315}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.8725485801696777},{"id":"https://openalex.org/C33643355","wikidata":"https://www.wikidata.org/wiki/Q5176731","display_name":"Count data","level":3,"score":0.6505684852600098},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5948781371116638},{"id":"https://openalex.org/C2780186347","wikidata":"https://www.wikidata.org/wiki/Q11414","display_name":"Subnetwork","level":2,"score":0.573822557926178},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5229185819625854},{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.5191023349761963},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4886665642261505},{"id":"https://openalex.org/C32946077","wikidata":"https://www.wikidata.org/wiki/Q618079","display_name":"Network analysis","level":2,"score":0.4408888518810272},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3240939676761627},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.25255286693573},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.19983601570129395},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.14376616477966309},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.14099296927452087},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.12919798493385315},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C100906024","wikidata":"https://www.wikidata.org/wiki/Q205692","display_name":"Poisson distribution","level":2,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1186/s13040-015-0072-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13040-015-0072-2","pdf_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/s13040-015-0072-2","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},{"id":"pmid:26692900","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26692900","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData mining","raw_type":null},{"id":"pmh:oai:escholarship.org/ark:/13030/qt6qp8z71s","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/6qp8z71s","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BioData mining, vol 8, iss 1","raw_type":"article"},{"id":"pmh:oai:europepmc.org:3653806","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4676895","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:qt6qp8z71s","is_oa":false,"landing_page_url":"http://www.escholarship.org/uc/item/6qp8z71s","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Liu, Z; Lin, S; &amp; Piantadosi, S. (2015). Network construction and structure detection with metagenomic count data. BioData Mining. doi: 10.1186/s13040-015-0072-2. UCLA: Retrieved from: http://www.escholarship.org/uc/item/6qp8z71s","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s13040-015-0072-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13040-015-0072-2","pdf_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/s13040-015-0072-2","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6000000238418579,"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15"}],"awards":[{"id":"https://openalex.org/G1964313893","display_name":"Collaborative Research: ATD: Statistical and Computational Methods for the Analysis of Metagenomic Count Data","funder_award_id":"1220772","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G2410345525","display_name":null,"funder_award_id":"DMS-1220772","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2192776864.pdf","grobid_xml":"https://content.openalex.org/works/W2192776864.grobid-xml"},"referenced_works_count":57,"referenced_works":["https://openalex.org/W1966623514","https://openalex.org/W1969635665","https://openalex.org/W1980345828","https://openalex.org/W1981509058","https://openalex.org/W1985373276","https://openalex.org/W1989119979","https://openalex.org/W1989889539","https://openalex.org/W1995390665","https://openalex.org/W1995393174","https://openalex.org/W2006465310","https://openalex.org/W2011312755","https://openalex.org/W2015953751","https://openalex.org/W2017987256","https://openalex.org/W2024626363","https://openalex.org/W2024707034","https://openalex.org/W2034285706","https://openalex.org/W2048957655","https://openalex.org/W2050072774","https://openalex.org/W2055615060","https://openalex.org/W2056279562","https://openalex.org/W2064333627","https://openalex.org/W2068017937","https://openalex.org/W2071221561","https://openalex.org/W2072970694","https://openalex.org/W2083109463","https://openalex.org/W2085284704","https://openalex.org/W2090263200","https://openalex.org/W2094399313","https://openalex.org/W2102746137","https://openalex.org/W2107453304","https://openalex.org/W2108718991","https://openalex.org/W2113977541","https://openalex.org/W2116299630","https://openalex.org/W2116846792","https://openalex.org/W2116895571","https://openalex.org/W2120976598","https://openalex.org/W2128124531","https://openalex.org/W2131171044","https://openalex.org/W2131186249","https://openalex.org/W2131681506","https://openalex.org/W2132555912","https://openalex.org/W2133211145","https://openalex.org/W2134751812","https://openalex.org/W2138089671","https://openalex.org/W2140379450","https://openalex.org/W2143842034","https://openalex.org/W2150002853","https://openalex.org/W2151128232","https://openalex.org/W2152246397","https://openalex.org/W2153990926","https://openalex.org/W2157611962","https://openalex.org/W2163480486","https://openalex.org/W2163702333","https://openalex.org/W2167822639","https://openalex.org/W2168330282","https://openalex.org/W2562162676","https://openalex.org/W3099768174"],"related_works":["https://openalex.org/W2060724872","https://openalex.org/W2082094785","https://openalex.org/W2202198356","https://openalex.org/W3087203342","https://openalex.org/W2377184161","https://openalex.org/W228984114","https://openalex.org/W2090026684","https://openalex.org/W4226360758","https://openalex.org/W2145448069","https://openalex.org/W2162576764"],"abstract_inverted_index":{"Network":[0],"analysis":[1],"is":[2],"crucial":[3],"for":[4,19],"detecting":[5],"subnetwork":[6],"structures":[7],"with":[8],"metagenomic":[9],"count":[10],"data.":[11],"We":[12],"developed":[13],"a":[14],"software":[15],"tool":[16],"in":[17],"MATLAB":[18],"network":[20],"construction":[21],"and":[22],"biologically":[23],"significant":[24],"module":[25],"detection.":[26],"Software":[27],"MetaNet":[28],"can":[29],"be":[30],"downloaded":[31],"from":[32],"http://biostatistics.csmc.edu/MetaNet/.":[33]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
