{"id":"https://openalex.org/W2172317106","doi":"https://doi.org/10.1186/s13040-015-0071-3","title":"Genome-wide predictors of NF-\u03baB recruitment and transcriptional activity","display_name":"Genome-wide predictors of NF-\u03baB recruitment and transcriptional activity","publication_year":2015,"publication_date":"2015-06-01","ids":{"openalex":"https://openalex.org/W2172317106","doi":"https://doi.org/10.1186/s13040-015-0071-3","mag":"2172317106","pmid":"https://pubmed.ncbi.nlm.nih.gov/26617673"},"language":"en","primary_location":{"id":"doi:10.1186/s13040-015-0071-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13040-015-0071-3","pdf_url":"https://biodatamining.biomedcentral.com/track/pdf/10.1186/s13040-015-0071-3","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://biodatamining.biomedcentral.com/track/pdf/10.1186/s13040-015-0071-3","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5051824786","display_name":"Marcin Cie\u015blik","orcid":"https://orcid.org/0000-0002-5467-1040"},"institutions":[{"id":"https://openalex.org/I51556381","display_name":"University of Virginia","ror":"https://ror.org/0153tk833","country_code":"US","type":"education","lineage":["https://openalex.org/I51556381"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Marcin Cie\u015blik","raw_affiliation_strings":["Department of Biochemistry and Molecular Genetics, University of Virginia School of Medicine, Charlottesville, Virginia USA ; Michigan Center for Translational Pathology, University of Michigan Medical School, Ann Arbor, Michigan 48109 USA","Department of Biochemistry and Molecular Genetics, University of Virginia School of Medicine, Charlottesville, Virginia, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Genetics, University of Virginia School of Medicine, Charlottesville, Virginia USA ; Michigan Center for Translational Pathology, University of Michigan Medical School, Ann Arbor, Michigan 48109 USA","institution_ids":[]},{"raw_affiliation_string":"Department of Biochemistry and Molecular Genetics, University of Virginia School of Medicine, Charlottesville, Virginia, USA","institution_ids":["https://openalex.org/I51556381"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5048872833","display_name":"Stefan Bekiranov","orcid":"https://orcid.org/0000-0002-3177-4346"},"institutions":[{"id":"https://openalex.org/I51556381","display_name":"University of Virginia","ror":"https://ror.org/0153tk833","country_code":"US","type":"education","lineage":["https://openalex.org/I51556381"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stefan Bekiranov","raw_affiliation_strings":["Department of Biochemistry and Molecular Genetics, University of Virginia School of Medicine, Charlottesville, Virginia USA","Department of Biochemistry and Molecular Genetics, University of Virginia School of Medicine, Charlottesville, Virginia, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Genetics, University of Virginia School of Medicine, Charlottesville, Virginia USA","institution_ids":[]},{"raw_affiliation_string":"Department of Biochemistry and Molecular Genetics, University of Virginia School of Medicine, Charlottesville, Virginia, USA","institution_ids":["https://openalex.org/I51556381"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5051824786"],"corresponding_institution_ids":["https://openalex.org/I51556381"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.3514,"has_fulltext":true,"cited_by_count":16,"citation_normalized_percentile":{"value":0.62102114,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"8","issue":"1","first_page":"37","last_page":"37"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11591","display_name":"NF-\u03baB Signaling Pathways","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11591","display_name":"NF-\u03baB Signaling Pathways","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10371","display_name":"Immune Response and Inflammation","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/epigenetics","display_name":"Epigenetics","score":0.7755752801895142},{"id":"https://openalex.org/keywords/chromatin","display_name":"Chromatin","score":0.7393568158149719},{"id":"https://openalex.org/keywords/dna-methylation","display_name":"DNA methylation","score":0.6787132620811462},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6569497585296631},{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.6424664258956909},{"id":"https://openalex.org/keywords/dna-binding-site","display_name":"DNA binding site","score":0.5756196975708008},{"id":"https://openalex.org/keywords/nucleosome","display_name":"Nucleosome","score":0.5526717305183411},{"id":"https://openalex.org/keywords/cpg-site","display_name":"CpG site","score":0.5396729707717896},{"id":"https://openalex.org/keywords/enhancer","display_name":"Enhancer","score":0.5292329788208008},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5066922307014465},{"id":"https://openalex.org/keywords/promoter","display_name":"Promoter","score":0.4892990291118622},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4834910035133362},{"id":"https://openalex.org/keywords/transcriptional-regulation","display_name":"Transcriptional regulation","score":0.4573580026626587},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4357249438762665},{"id":"https://openalex.org/keywords/binding-site","display_name":"Binding site","score":0.4354928433895111},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.3768269121646881},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2530133128166199},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.2169669270515442}],"concepts":[{"id":"https://openalex.org/C41091548","wikidata":"https://www.wikidata.org/wiki/Q26939","display_name":"Epigenetics","level":3,"score":0.7755752801895142},{"id":"https://openalex.org/C83640560","wikidata":"https://www.wikidata.org/wiki/Q180951","display_name":"Chromatin","level":3,"score":0.7393568158149719},{"id":"https://openalex.org/C190727270","wikidata":"https://www.wikidata.org/wiki/Q874745","display_name":"DNA methylation","level":4,"score":0.6787132620811462},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6569497585296631},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.6424664258956909},{"id":"https://openalex.org/C3662595","wikidata":"https://www.wikidata.org/wiki/Q5205743","display_name":"DNA binding site","level":5,"score":0.5756196975708008},{"id":"https://openalex.org/C84772758","wikidata":"https://www.wikidata.org/wiki/Q271794","display_name":"Nucleosome","level":4,"score":0.5526717305183411},{"id":"https://openalex.org/C140173407","wikidata":"https://www.wikidata.org/wiki/Q1138358","display_name":"CpG site","level":5,"score":0.5396729707717896},{"id":"https://openalex.org/C111936080","wikidata":"https://www.wikidata.org/wiki/Q913367","display_name":"Enhancer","level":4,"score":0.5292329788208008},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5066922307014465},{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.4892990291118622},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4834910035133362},{"id":"https://openalex.org/C27153228","wikidata":"https://www.wikidata.org/wiki/Q3787274","display_name":"Transcriptional regulation","level":4,"score":0.4573580026626587},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4357249438762665},{"id":"https://openalex.org/C107824862","wikidata":"https://www.wikidata.org/wiki/Q616005","display_name":"Binding site","level":2,"score":0.4354928433895111},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.3768269121646881},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2530133128166199},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.2169669270515442}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1186/s13040-015-0071-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13040-015-0071-3","pdf_url":"https://biodatamining.biomedcentral.com/track/pdf/10.1186/s13040-015-0071-3","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},{"id":"pmid:26617673","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26617673","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData mining","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:4661973","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4661973","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BioData Min","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13040-015-0071-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13040-015-0071-3","pdf_url":"https://biodatamining.biomedcentral.com/track/pdf/10.1186/s13040-015-0071-3","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6100000143051147,"display_name":"Life below water","id":"https://metadata.un.org/sdg/14"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320310536","display_name":"University of Virginia","ror":"https://ror.org/0153tk833"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2172317106.pdf","grobid_xml":"https://content.openalex.org/works/W2172317106.grobid-xml"},"referenced_works_count":163,"referenced_works":["https://openalex.org/W707389","https://openalex.org/W1507573193","https://openalex.org/W1599519417","https://openalex.org/W1622061844","https://openalex.org/W1819491336","https://openalex.org/W1822745879","https://openalex.org/W1885324322","https://openalex.org/W1902027874","https://openalex.org/W1963858612","https://openalex.org/W1964963969","https://openalex.org/W1965052314","https://openalex.org/W1968345969","https://openalex.org/W1973750557","https://openalex.org/W1974721225","https://openalex.org/W1976209715","https://openalex.org/W1976287566","https://openalex.org/W1977620504","https://openalex.org/W1978125302","https://openalex.org/W1978154786","https://openalex.org/W1979513200","https://openalex.org/W1981030303","https://openalex.org/W1982519328","https://openalex.org/W1982754708","https://openalex.org/W1985043920","https://openalex.org/W1986586739","https://openalex.org/W1989338936","https://openalex.org/W1990233086","https://openalex.org/W1991208204","https://openalex.org/W1994946944","https://openalex.org/W1996245446","https://openalex.org/W1998000745","https://openalex.org/W1998463022","https://openalex.org/W1999319214","https://openalex.org/W2002698073","https://openalex.org/W2004413662","https://openalex.org/W2008051478","https://openalex.org/W2010982295","https://openalex.org/W2011463791","https://openalex.org/W2014677321","https://openalex.org/W2015428618","https://openalex.org/W2015445169","https://openalex.org/W2017606565","https://openalex.org/W2017780187","https://openalex.org/W2017840637","https://openalex.org/W2018439988","https://openalex.org/W2019005509","https://openalex.org/W2020298913","https://openalex.org/W2020790775","https://openalex.org/W2024497753","https://openalex.org/W2027461143","https://openalex.org/W2028651845","https://openalex.org/W2029979630","https://openalex.org/W2031697457","https://openalex.org/W2034879676","https://openalex.org/W2036619779","https://openalex.org/W2036802163","https://openalex.org/W2038239151","https://openalex.org/W2039053594","https://openalex.org/W2039817035","https://openalex.org/W2042073539","https://openalex.org/W2044312163","https://openalex.org/W2048485003","https://openalex.org/W2049862742","https://openalex.org/W2050402493","https://openalex.org/W2053125671","https://openalex.org/W2055281361","https://openalex.org/W2059287377","https://openalex.org/W2059944938","https://openalex.org/W2060064237","https://openalex.org/W2061272711","https://openalex.org/W2061548364","https://openalex.org/W2069063919","https://openalex.org/W2071514232","https://openalex.org/W2077468629","https://openalex.org/W2078034709","https://openalex.org/W2080840041","https://openalex.org/W2081857390","https://openalex.org/W2083245183","https://openalex.org/W2083415193","https://openalex.org/W2084748297","https://openalex.org/W2085023568","https://openalex.org/W2085177202","https://openalex.org/W2086876386","https://openalex.org/W2089200494","https://openalex.org/W2089430148","https://openalex.org/W2092390808","https://openalex.org/W2094584847","https://openalex.org/W2094863064","https://openalex.org/W2095791120","https://openalex.org/W2096011465","https://openalex.org/W2096745936","https://openalex.org/W2097803426","https://openalex.org/W2098211567","https://openalex.org/W2099737847","https://openalex.org/W2099848965","https://openalex.org/W2100847260","https://openalex.org/W2101072711","https://openalex.org/W2101234009","https://openalex.org/W2102304447","https://openalex.org/W2103777723","https://openalex.org/W2106340111","https://openalex.org/W2106756035","https://openalex.org/W2107432340","https://openalex.org/W2107922733","https://openalex.org/W2108524319","https://openalex.org/W2110096996","https://openalex.org/W2111353388","https://openalex.org/W2111846924","https://openalex.org/W2112293785","https://openalex.org/W2113112889","https://openalex.org/W2116152510","https://openalex.org/W2119656037","https://openalex.org/W2119723870","https://openalex.org/W2121040735","https://openalex.org/W2122044177","https://openalex.org/W2122097157","https://openalex.org/W2123032740","https://openalex.org/W2123564569","https://openalex.org/W2124486107","https://openalex.org/W2126870038","https://openalex.org/W2129924706","https://openalex.org/W2130202009","https://openalex.org/W2130765177","https://openalex.org/W2132692097","https://openalex.org/W2133938268","https://openalex.org/W2134558816","https://openalex.org/W2135018484","https://openalex.org/W2135940271","https://openalex.org/W2136787567","https://openalex.org/W2141290206","https://openalex.org/W2142136518","https://openalex.org/W2142162924","https://openalex.org/W2142410561","https://openalex.org/W2142492088","https://openalex.org/W2144328273","https://openalex.org/W2145191876","https://openalex.org/W2147277158","https://openalex.org/W2150266801","https://openalex.org/W2151522898","https://openalex.org/W2152239989","https://openalex.org/W2153833981","https://openalex.org/W2154431984","https://openalex.org/W2154746182","https://openalex.org/W2154833122","https://openalex.org/W2156066129","https://openalex.org/W2157952888","https://openalex.org/W2160304959","https://openalex.org/W2160655220","https://openalex.org/W2161435642","https://openalex.org/W2162544653","https://openalex.org/W2164222087","https://openalex.org/W2164404874","https://openalex.org/W2166037178","https://openalex.org/W2166096831","https://openalex.org/W2166559705","https://openalex.org/W2167197669","https://openalex.org/W2167776710","https://openalex.org/W2169696276","https://openalex.org/W2998574808","https://openalex.org/W3101608900","https://openalex.org/W4246645317","https://openalex.org/W4256062813","https://openalex.org/W6675354045"],"related_works":["https://openalex.org/W2113330652","https://openalex.org/W2061914098","https://openalex.org/W4393004084","https://openalex.org/W4309683845","https://openalex.org/W2118646732","https://openalex.org/W4387565139","https://openalex.org/W4255247427","https://openalex.org/W2040480653","https://openalex.org/W2027133237","https://openalex.org/W2362561464"],"abstract_inverted_index":{"We":[0],"provide":[1],"evidence":[2],"of":[3,13,34,47],"NF-\u03baB":[4,42],"binding":[5,17],"within":[6],"genomic":[7],"regions":[8],"that":[9,31],"lack":[10],"classical":[11],"marks":[12,36],"activity.":[14],"These":[15],"pioneer":[16],"events":[18],"are":[19],"relatively":[20],"often":[21],"associated":[22],"with":[23],"transcriptional":[24],"regulation.":[25],"Further,":[26],"our":[27],"predictive":[28],"models":[29],"indicate":[30],"specific":[32],"combinations":[33],"epigenetic":[35],"and":[37],"transcription":[38],"factors":[39],"predetermine":[40],"the":[41,45],"cistrome,":[43],"supporting":[44],"feasibility":[46],"using":[48],"statistical":[49],"approaches":[50],"to":[51],"identify":[52],"\"histone":[53],"codes\".":[54]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
