{"id":"https://openalex.org/W2155774595","doi":"https://doi.org/10.1186/s13040-015-0047-3","title":"Predicting linear B-cell epitopes using amino acid anchoring pair composition","display_name":"Predicting linear B-cell epitopes using amino acid anchoring pair composition","publication_year":2015,"publication_date":"2015-04-28","ids":{"openalex":"https://openalex.org/W2155774595","doi":"https://doi.org/10.1186/s13040-015-0047-3","mag":"2155774595","pmid":"https://pubmed.ncbi.nlm.nih.gov/26029265"},"language":"en","primary_location":{"id":"doi:10.1186/s13040-015-0047-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13040-015-0047-3","pdf_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/s13040-015-0047-3","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/s13040-015-0047-3","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5022214864","display_name":"Weike Shen","orcid":"https://orcid.org/0009-0007-3354-9023"},"institutions":[{"id":"https://openalex.org/I43337087","display_name":"Hebei University","ror":"https://ror.org/01p884a79","country_code":"CN","type":"education","lineage":["https://openalex.org/I43337087"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Weike Shen","raw_affiliation_strings":["Department of Molecular Biology, Hebei University College of Life Sciences, 180 Wusi Road, Baoding, 071002 China","Department of Molecular Biology, Hebei University College of Life Sciences, 180 Wusi Road, Baoding, 071002, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Molecular Biology, Hebei University College of Life Sciences, 180 Wusi Road, Baoding, 071002 China","institution_ids":["https://openalex.org/I43337087"]},{"raw_affiliation_string":"Department of Molecular Biology, Hebei University College of Life Sciences, 180 Wusi Road, Baoding, 071002, China","institution_ids":["https://openalex.org/I43337087"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007785689","display_name":"Yuan Cao","orcid":"https://orcid.org/0000-0002-2933-4237"},"institutions":[{"id":"https://openalex.org/I4210157767","display_name":"Jinan Military General Hospital","ror":"https://ror.org/05chjan92","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210157767"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuan Cao","raw_affiliation_strings":["Department of Laboratory Medicine General Hospital of Jinan Military Region, Jinan, Shandong 250031 China","Department of Laboratory Medicine General Hospital of Jinan Military Region, Jinan, Shandong, 250031, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Laboratory Medicine General Hospital of Jinan Military Region, Jinan, Shandong 250031 China","institution_ids":["https://openalex.org/I4210157767"]},{"raw_affiliation_string":"Department of Laboratory Medicine General Hospital of Jinan Military Region, Jinan, Shandong, 250031, China","institution_ids":["https://openalex.org/I4210157767"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055079216","display_name":"Lei Cha","orcid":null},"institutions":[{"id":"https://openalex.org/I4210145278","display_name":"Institute of Applied Physics and Computational Mathematics","ror":"https://ror.org/03sxpbt26","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210145278"]},{"id":"https://openalex.org/I4391767653","display_name":"Institute of Basic Medical Sciences of the Chinese Academy of Medical Sciences","ror":"https://ror.org/055qbch41","country_code":null,"type":"facility","lineage":["https://openalex.org/I200296433","https://openalex.org/I4391767653"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lei Cha","raw_affiliation_strings":["Center of Computational Biology, Beijing Institute of Basic Medical Sciences, Taiping Road 27, Beijing, 100850 China","Center of Computational Biology, Beijing Institute of Basic Medical Sciences, Taiping Road 27, Beijing, 100850, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center of Computational Biology, Beijing Institute of Basic Medical Sciences, Taiping Road 27, Beijing, 100850 China","institution_ids":["https://openalex.org/I4210145278"]},{"raw_affiliation_string":"Center of Computational Biology, Beijing Institute of Basic Medical Sciences, Taiping Road 27, Beijing, 100850, China","institution_ids":["https://openalex.org/I4391767653"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101916981","display_name":"Xufei Zhang","orcid":"https://orcid.org/0009-0000-1367-5347"},"institutions":[{"id":"https://openalex.org/I43337087","display_name":"Hebei University","ror":"https://ror.org/01p884a79","country_code":"CN","type":"education","lineage":["https://openalex.org/I43337087"]},{"id":"https://openalex.org/I93393672","display_name":"Western University of Health Sciences","ror":"https://ror.org/05167c961","country_code":"US","type":"education","lineage":["https://openalex.org/I93393672"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Xufei Zhang","raw_affiliation_strings":["Department of Basic Medical Sciences, Western University of Health Sciences, Pomona, CA 91766 USA","Department of Molecular Biology, Hebei University College of Life Sciences, 180 Wusi Road, Baoding, 071002 China","Department of Molecular Biology, Hebei University College of Life Sciences, 180 Wusi Road, Baoding, 071002, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Basic Medical Sciences, Western University of Health Sciences, Pomona, CA 91766 USA","institution_ids":["https://openalex.org/I93393672"]},{"raw_affiliation_string":"Department of Molecular Biology, Hebei University College of Life Sciences, 180 Wusi Road, Baoding, 071002 China","institution_ids":["https://openalex.org/I43337087"]},{"raw_affiliation_string":"Department of Molecular Biology, Hebei University College of Life Sciences, 180 Wusi Road, Baoding, 071002, China","institution_ids":["https://openalex.org/I43337087"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034720217","display_name":"Xiaomin Ying","orcid":"https://orcid.org/0000-0001-6126-7372"},"institutions":[{"id":"https://openalex.org/I4210145278","display_name":"Institute of Applied Physics and Computational Mathematics","ror":"https://ror.org/03sxpbt26","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210145278"]},{"id":"https://openalex.org/I4391767653","display_name":"Institute of Basic Medical Sciences of the Chinese Academy of Medical Sciences","ror":"https://ror.org/055qbch41","country_code":null,"type":"facility","lineage":["https://openalex.org/I200296433","https://openalex.org/I4391767653"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaomin Ying","raw_affiliation_strings":["Center of Computational Biology, Beijing Institute of Basic Medical Sciences, Taiping Road 27, Beijing, 100850 China","Center of Computational Biology, Beijing Institute of Basic Medical Sciences, Taiping Road 27, Beijing, 100850, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center of Computational Biology, Beijing Institute of Basic Medical Sciences, Taiping Road 27, Beijing, 100850 China","institution_ids":["https://openalex.org/I4210145278"]},{"raw_affiliation_string":"Center of Computational Biology, Beijing Institute of Basic Medical Sciences, Taiping Road 27, Beijing, 100850, China","institution_ids":["https://openalex.org/I4391767653"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108004403","display_name":"Wei Zhang","orcid":"https://orcid.org/0000-0002-2169-8749"},"institutions":[{"id":"https://openalex.org/I43337087","display_name":"Hebei University","ror":"https://ror.org/01p884a79","country_code":"CN","type":"education","lineage":["https://openalex.org/I43337087"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wei Zhang","raw_affiliation_strings":["Department of Molecular Biology, Hebei University College of Life Sciences, 180 Wusi Road, Baoding, 071002 China","Department of Molecular Biology, Hebei University College of Life Sciences, 180 Wusi Road, Baoding, 071002, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Molecular Biology, Hebei University College of Life Sciences, 180 Wusi Road, Baoding, 071002 China","institution_ids":["https://openalex.org/I43337087"]},{"raw_affiliation_string":"Department of Molecular Biology, Hebei University College of Life Sciences, 180 Wusi Road, Baoding, 071002, China","institution_ids":["https://openalex.org/I43337087"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024609386","display_name":"Kun Ge","orcid":"https://orcid.org/0000-0001-8972-837X"},"institutions":[{"id":"https://openalex.org/I4210140680","display_name":"Affiliated Hospital of Hebei University","ror":"https://ror.org/049vsq398","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210140680"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kun Ge","raw_affiliation_strings":["Centre Laboratory of Affiliated Hospital of Hebei University, Baoding, Hebei 071000 China","Centre Laboratory of Affiliated Hospital of Hebei University, Baoding, Hebei, 071000, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre Laboratory of Affiliated Hospital of Hebei University, Baoding, Hebei 071000 China","institution_ids":["https://openalex.org/I4210140680"]},{"raw_affiliation_string":"Centre Laboratory of Affiliated Hospital of Hebei University, Baoding, Hebei, 071000, China","institution_ids":["https://openalex.org/I4210140680"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056217834","display_name":"Wuju Li","orcid":"https://orcid.org/0000-0003-4613-9692"},"institutions":[{"id":"https://openalex.org/I4210145278","display_name":"Institute of Applied Physics and Computational Mathematics","ror":"https://ror.org/03sxpbt26","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210145278"]},{"id":"https://openalex.org/I4391767653","display_name":"Institute of Basic Medical Sciences of the Chinese Academy of Medical Sciences","ror":"https://ror.org/055qbch41","country_code":null,"type":"facility","lineage":["https://openalex.org/I200296433","https://openalex.org/I4391767653"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Wuju Li","raw_affiliation_strings":["Center of Computational Biology, Beijing Institute of Basic Medical Sciences, Taiping Road 27, Beijing, 100850 China","Center of Computational Biology, Beijing Institute of Basic Medical Sciences, Taiping Road 27, Beijing, 100850, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center of Computational Biology, Beijing Institute of Basic Medical Sciences, Taiping Road 27, Beijing, 100850 China","institution_ids":["https://openalex.org/I4210145278"]},{"raw_affiliation_string":"Center of Computational Biology, Beijing Institute of Basic Medical Sciences, Taiping Road 27, Beijing, 100850, China","institution_ids":["https://openalex.org/I4391767653"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5050507251","display_name":"Li Zhong","orcid":"https://orcid.org/0000-0003-3815-6484"},"institutions":[{"id":"https://openalex.org/I43337087","display_name":"Hebei University","ror":"https://ror.org/01p884a79","country_code":"CN","type":"education","lineage":["https://openalex.org/I43337087"]},{"id":"https://openalex.org/I93393672","display_name":"Western University of Health Sciences","ror":"https://ror.org/05167c961","country_code":"US","type":"education","lineage":["https://openalex.org/I93393672"]}],"countries":["CN","US"],"is_corresponding":true,"raw_author_name":"Li Zhong","raw_affiliation_strings":["Department of Basic Medical Sciences, Western University of Health Sciences, Pomona, CA 91766 USA","Department of Molecular Biology, Hebei University College of Life Sciences, 180 Wusi Road, Baoding, 071002 China","Department of Basic Medical Sciences, Western University of Health Sciences, Pomona, CA, 91766, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Basic Medical Sciences, Western University of Health Sciences, Pomona, CA 91766 USA","institution_ids":["https://openalex.org/I93393672"]},{"raw_affiliation_string":"Department of Molecular Biology, Hebei University College of Life Sciences, 180 Wusi Road, Baoding, 071002 China","institution_ids":["https://openalex.org/I43337087"]},{"raw_affiliation_string":"Department of Basic Medical Sciences, Western University of Health Sciences, Pomona, CA, 91766, USA","institution_ids":["https://openalex.org/I93393672"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5050507251","https://openalex.org/A5056217834"],"corresponding_institution_ids":["https://openalex.org/I4210145278","https://openalex.org/I43337087","https://openalex.org/I4391767653","https://openalex.org/I93393672"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.478,"has_fulltext":true,"cited_by_count":38,"citation_normalized_percentile":{"value":0.82160119,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"8","issue":"1","first_page":"14","last_page":"14"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.0026000000070780516,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10580","display_name":"Immunotherapy and Immune Responses","score":0.0008999999845400453,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/epitope","display_name":"Epitope","score":0.8422387838363647},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.7103148102760315},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6413122415542603},{"id":"https://openalex.org/keywords/cross-validation","display_name":"Cross-validation","score":0.5685608386993408},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5537998676300049},{"id":"https://openalex.org/keywords/linear-model","display_name":"Linear model","score":0.47478076815605164},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.4549048840999603},{"id":"https://openalex.org/keywords/predictive-modelling","display_name":"Predictive modelling","score":0.42934805154800415},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.40266919136047363},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3714144825935364},{"id":"https://openalex.org/keywords/antigen","display_name":"Antigen","score":0.2571873068809509},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.13002583384513855},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.12348291277885437}],"concepts":[{"id":"https://openalex.org/C195616568","wikidata":"https://www.wikidata.org/wiki/Q128711","display_name":"Epitope","level":3,"score":0.8422387838363647},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.7103148102760315},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6413122415542603},{"id":"https://openalex.org/C27181475","wikidata":"https://www.wikidata.org/wiki/Q541014","display_name":"Cross-validation","level":2,"score":0.5685608386993408},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5537998676300049},{"id":"https://openalex.org/C163175372","wikidata":"https://www.wikidata.org/wiki/Q3339222","display_name":"Linear model","level":2,"score":0.47478076815605164},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4549048840999603},{"id":"https://openalex.org/C45804977","wikidata":"https://www.wikidata.org/wiki/Q7239673","display_name":"Predictive modelling","level":2,"score":0.42934805154800415},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.40266919136047363},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3714144825935364},{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.2571873068809509},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.13002583384513855},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.12348291277885437}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1186/s13040-015-0047-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13040-015-0047-3","pdf_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/s13040-015-0047-3","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},{"id":"pmid:26029265","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26029265","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData mining","raw_type":null},{"id":"pmh:oai:europepmc.org:3410684","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4449562","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13040-015-0047-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13040-015-0047-3","pdf_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/s13040-015-0047-3","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.5,"id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G1452356967","display_name":"\u57fa\u4e8e\u751f\u7269\u4fe1\u606f\u5b66\u65b9\u6cd5\u53caRNA-Seq\u7b56\u7565\u63a2\u7d22\u521b\u4f24\u5f27\u83ccsRNA\u53ca\u529f\u80fd\u7814\u7a76","funder_award_id":"31100960","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2775796746","display_name":null,"funder_award_id":"31471244","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3221976315","display_name":null,"funder_award_id":"31271404","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6451523754","display_name":null,"funder_award_id":"81472744","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2155774595.pdf","grobid_xml":"https://content.openalex.org/works/W2155774595.grobid-xml"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W1526839960","https://openalex.org/W1542067597","https://openalex.org/W1795576732","https://openalex.org/W1968361401","https://openalex.org/W1976801077","https://openalex.org/W1979874740","https://openalex.org/W1993568862","https://openalex.org/W2004216886","https://openalex.org/W2013573826","https://openalex.org/W2035014358","https://openalex.org/W2055522016","https://openalex.org/W2073745636","https://openalex.org/W2073908337","https://openalex.org/W2087202599","https://openalex.org/W2097874743","https://openalex.org/W2106150646","https://openalex.org/W2118943119","https://openalex.org/W2134732827","https://openalex.org/W2135083016","https://openalex.org/W2151717432","https://openalex.org/W2153635508","https://openalex.org/W2156909104","https://openalex.org/W2195861155","https://openalex.org/W2726651211","https://openalex.org/W4230674625"],"related_works":["https://openalex.org/W2099369243","https://openalex.org/W2345184372","https://openalex.org/W4223656335","https://openalex.org/W4379875305","https://openalex.org/W4285610644","https://openalex.org/W2951086240","https://openalex.org/W4289100725","https://openalex.org/W2952949598","https://openalex.org/W3214303109","https://openalex.org/W2155774595"],"abstract_inverted_index":{"BACKGROUND:":[0],"Accurate":[1],"identification":[2],"of":[3,63,74,107,126,131,135,156,175,179,184,190,194,214,237,241,250,267,286],"linear":[4,34,64,261,287],"B-cell":[5,35,65,262,288],"epitopes":[6,263],"plays":[7],"an":[8,172,188,211,234],"important":[9],"role":[10],"in":[11,33,104,111,243,259],"peptide":[12],"vaccine":[13],"designs,":[14],"immunodiagnosis,":[15],"and":[16,81,110,133,151,177,186,192,239],"antibody":[17],"productions.":[18],"Although":[19],"several":[20],"prediction":[21,47,62,92,101,285],"methods":[22,150],"have":[23],"been":[24,281],"reported,":[25],"unsatisfied":[26],"accuracy":[27,48,102,134],"has":[28,280],"limited":[29],"the":[30,72,90,100,116,143,152,163,247,265],"broad":[31],"usages":[32],"epitope":[36],"prediction.":[37],"Therefore,":[38],"developing":[39],"a":[40,58,256,278,292],"reliable":[41],"model":[42,60,229,254],"with":[43,89,120,158,167,202,206],"significant":[44,257],"improvement":[45,258],"on":[46,196,216,230,275],"is":[49,291],"highly":[50],"desirable.":[51],"RESULTS:":[52],"In":[53,115],"this":[54],"study,":[55,277],"we":[56],"developed":[57,282],"novel":[59],"for":[61,283],"epitopes,":[66,289],"APCpred,":[67],"which":[68,137,290],"was":[69,138],"derived":[70],"from":[71,223],"combination":[73,154],"amino":[75,268],"acid":[76,269],"anchoring":[77,270],"pair":[78,271],"composition":[79,272],"(APC)":[80],"Support":[82],"Vector":[83],"Machine":[84],"(SVM)":[85],"methods.":[86],"Systematic":[87],"comparisons":[88],"existing":[91,144],"models":[93],"demonstrated":[94,255],"that":[95],"APCpred":[96,128,170,209,227,253],"method":[97,155],"significantly":[98],"improved":[99,173],"both":[103],"fivefold":[105,117,164,244],"cross-validation":[106,118,165,245],"training":[108],"datasets":[109],"independent":[112],"blind":[113],"datasets.":[114],"test":[119,166],"Chen872":[121],"dataset":[122,198,232],"at":[123,181,246],"window":[124,182,221,248],"size":[125,183,249],"20,":[127,226],"achieved":[129,171,210,233],"AUC":[130,174,189,236],"0.809":[132],"72.94%,":[136],"much":[139],"more":[140],"accurate":[141],"than":[142],"models,":[145],"e.g.,":[146],"Bayesb,":[147],"Chen's":[148],"AAP":[149,157],"enhanced":[153],"five":[159],"AP":[160],"scales.":[161],"For":[162],"ABC16":[168,203],"dataset,":[169,208],"0.794":[176],"ACC":[178,193,240],"73.00%":[180],"16,":[185],"attained":[187],"0.748":[191,238],"67.96%":[195],"Blind387":[197],"after":[199],"being":[200],"trained":[201],"dataset.":[204,218],"Trained":[205],"Lbtope_Confirm":[207],"increased":[212],"Acc":[213],"55.09%":[215],"FBC934":[217],"Within":[219],"sequence":[220],"sizes":[222],"12":[224],"to":[225],"final":[228],"homology-reduced":[231],"optimal":[235],"68.43%":[242],"20.":[251],"CONCLUSION:":[252],"predicting":[260],"using":[264],"features":[266],"(APC).":[273],"Based":[274],"our":[276],"webserver":[279],"on-line":[284],"free":[293],"access":[294],"at:":[295],"http:/ccb.bmi.ac.cn/APCpred/.":[296]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":3}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2025-10-10T00:00:00"}
