{"id":"https://openalex.org/W2125158282","doi":"https://doi.org/10.1186/s13040-014-0034-0","title":"Performance of genetic programming optimised Bowtie2 on genome comparison and analytic testing (GCAT) benchmarks","display_name":"Performance of genetic programming optimised Bowtie2 on genome comparison and analytic testing (GCAT) benchmarks","publication_year":2015,"publication_date":"2015-01-07","ids":{"openalex":"https://openalex.org/W2125158282","doi":"https://doi.org/10.1186/s13040-014-0034-0","mag":"2125158282","pmid":"https://pubmed.ncbi.nlm.nih.gov/25621011"},"language":"en","primary_location":{"id":"doi:10.1186/s13040-014-0034-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13040-014-0034-0","pdf_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/s13040-014-0034-0","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/s13040-014-0034-0","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5112258107","display_name":"William B. Langdon","orcid":null},"institutions":[{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"W B Langdon","raw_affiliation_strings":["Department of Computer ScienceUniversity College London, Gower Street, London, WC1E 6BT UK"],"affiliations":[{"raw_affiliation_string":"Department of Computer ScienceUniversity College London, Gower Street, London, WC1E 6BT UK","institution_ids":["https://openalex.org/I45129253"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5112258107"],"corresponding_institution_ids":["https://openalex.org/I45129253"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1525,"currency":"EUR","value_usd":1644},"fwci":12.5253,"has_fulltext":true,"cited_by_count":691,"citation_normalized_percentile":{"value":0.99149102,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"8","issue":"1","first_page":"1","last_page":"1"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genetic-programming","display_name":"Genetic programming","score":0.7041043043136597},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6849404573440552},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.6831235289573669},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.6628977060317993},{"id":"https://openalex.org/keywords/scanner","display_name":"Scanner","score":0.5627036094665527},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.505343496799469},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.462380588054657},{"id":"https://openalex.org/keywords/dynamic-programming","display_name":"Dynamic programming","score":0.42539194226264954},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3521343469619751},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.33325907588005066},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3251992464065552},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1619127094745636},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13702377676963806},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.12223076820373535},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.10368475317955017},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.08243587613105774}],"concepts":[{"id":"https://openalex.org/C110332635","wikidata":"https://www.wikidata.org/wiki/Q629498","display_name":"Genetic programming","level":2,"score":0.7041043043136597},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6849404573440552},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.6831235289573669},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.6628977060317993},{"id":"https://openalex.org/C2779751349","wikidata":"https://www.wikidata.org/wiki/Q1474480","display_name":"Scanner","level":2,"score":0.5627036094665527},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.505343496799469},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.462380588054657},{"id":"https://openalex.org/C37404715","wikidata":"https://www.wikidata.org/wiki/Q380679","display_name":"Dynamic programming","level":2,"score":0.42539194226264954},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3521343469619751},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.33325907588005066},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3251992464065552},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1619127094745636},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13702377676963806},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.12223076820373535},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.10368475317955017},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.08243587613105774},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/s13040-014-0034-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13040-014-0034-0","pdf_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/s13040-014-0034-0","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},{"id":"pmid:25621011","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25621011","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData mining","raw_type":null},{"id":"pmh:oai:eprints.ucl.ac.uk.OAI2:1469805","is_oa":false,"landing_page_url":"https://discovery.ucl.ac.uk/id/eprint/1469805/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400024","display_name":"UCL Discovery (University College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I45129253","host_organization_name":"University College London","host_organization_lineage":["https://openalex.org/I45129253"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"   BioData Min , 8  (1)    , Article 1. (2015)      ","raw_type":"Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:4304608","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4304608","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BioData Min","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13040-014-0034-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13040-014-0034-0","pdf_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/s13040-014-0034-0","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/8","display_name":"Decent work and economic growth","score":0.6299999952316284}],"awards":[{"id":"https://openalex.org/G6794522244","display_name":null,"funder_award_id":"EP/J017515/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2125158282.pdf","grobid_xml":"https://content.openalex.org/works/W2125158282.grobid-xml"},"referenced_works_count":30,"referenced_works":["https://openalex.org/W100379578","https://openalex.org/W1483736078","https://openalex.org/W1559956479","https://openalex.org/W1576818901","https://openalex.org/W1639032689","https://openalex.org/W1659842140","https://openalex.org/W1984074188","https://openalex.org/W2005129098","https://openalex.org/W2017290598","https://openalex.org/W2030767781","https://openalex.org/W2040909468","https://openalex.org/W2056842119","https://openalex.org/W2097432774","https://openalex.org/W2103441770","https://openalex.org/W2122056961","https://openalex.org/W2124985265","https://openalex.org/W2129016996","https://openalex.org/W2147733682","https://openalex.org/W2158714788","https://openalex.org/W2164773932","https://openalex.org/W2170551349","https://openalex.org/W2171777347","https://openalex.org/W2172211943","https://openalex.org/W2885727518","https://openalex.org/W3098304617","https://openalex.org/W3183603590","https://openalex.org/W4205596332","https://openalex.org/W4247053599","https://openalex.org/W4248950571","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W4232857084","https://openalex.org/W1517555227","https://openalex.org/W2001485867","https://openalex.org/W762151464","https://openalex.org/W2389610024","https://openalex.org/W2653993779","https://openalex.org/W2167528937","https://openalex.org/W1671796876","https://openalex.org/W2911295078","https://openalex.org/W2376117328"],"abstract_inverted_index":{"On":[0],"both":[1],"singled":[2],"ended":[3],"and":[4],"paired-end":[5],"synthetic":[6],"next":[7],"generation":[8],"DNA":[9],"sequence":[10],"GCAT":[11],"benchmarks":[12],"Bowtie2GP":[13],"runs":[14],"up":[15,32],"to":[16,33],"45%":[17],"faster":[18],"than":[19],"Bowtie2.":[20],"The":[21],"lost":[22],"in":[23],"accuracy":[24],"can":[25],"be":[26],"as":[27,29],"little":[28],"0.2-0.5%":[30],"but":[31],"2.5%":[34],"for":[35],"longer":[36],"sequences.":[37]},"counts_by_year":[{"year":2026,"cited_by_count":32},{"year":2025,"cited_by_count":99},{"year":2024,"cited_by_count":136},{"year":2023,"cited_by_count":97},{"year":2022,"cited_by_count":76},{"year":2021,"cited_by_count":85},{"year":2020,"cited_by_count":43},{"year":2019,"cited_by_count":39},{"year":2018,"cited_by_count":35},{"year":2017,"cited_by_count":24},{"year":2016,"cited_by_count":20},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}