{"id":"https://openalex.org/W3012773211","doi":"https://doi.org/10.1186/s13029-020-0077-1","title":"2DKD: a toolkit for content-based local image search","display_name":"2DKD: a toolkit for content-based local image search","publication_year":2020,"publication_date":"2020-02-10","ids":{"openalex":"https://openalex.org/W3012773211","doi":"https://doi.org/10.1186/s13029-020-0077-1","mag":"3012773211","pmid":"https://pubmed.ncbi.nlm.nih.gov/32064000"},"language":"en","primary_location":{"id":"doi:10.1186/s13029-020-0077-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13029-020-0077-1","pdf_url":"https://scfbm.biomedcentral.com/track/pdf/10.1186/s13029-020-0077-1.pdf","source":{"id":"https://openalex.org/S45786803","display_name":"Source Code for Biology and Medicine","issn_l":"1751-0473","issn":["1751-0473"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source Code for Biology and Medicine","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://scfbm.biomedcentral.com/track/pdf/10.1186/s13029-020-0077-1.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5081432577","display_name":"Julian S. DeVille","orcid":null},"institutions":[{"id":"https://openalex.org/I110325482","display_name":"Eastern Kentucky University","ror":"https://ror.org/012xks909","country_code":"US","type":"education","lineage":["https://openalex.org/I110325482"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Julian S. DeVille","raw_affiliation_strings":["1Department of Mathematics and Statistics, Eastern Kentucky University, 521 Lancaster Ave., Richmond, 40475 KY USA","Department of Mathematics and Statistics, Eastern Kentucky University, 521 Lancaster Ave., Richmond, 40475, KY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1Department of Mathematics and Statistics, Eastern Kentucky University, 521 Lancaster Ave., Richmond, 40475 KY USA","institution_ids":["https://openalex.org/I110325482"]},{"raw_affiliation_string":"Department of Mathematics and Statistics, Eastern Kentucky University, 521 Lancaster Ave., Richmond, 40475, KY, USA","institution_ids":["https://openalex.org/I110325482"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062293219","display_name":"Daisuke Kihara","orcid":"https://orcid.org/0000-0003-4091-6614"},"institutions":[{"id":"https://openalex.org/I1285204247","display_name":"Cincinnati Children's Hospital Medical Center","ror":"https://ror.org/01hcyya48","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1285204247"]},{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daisuke Kihara","raw_affiliation_strings":["2Department of Biology Sciences, Purdue University, 249 S Martin Jischke Dr, West Lafayette, 47907 IN USA","3Department of Computer Science, Purdue University, 305 N University Street, West Lafayette, 47907 IN USA","4Department of Pediatrics, Cincinnati Children's Hospital Medical Care, University of Cincinnati, Cincinnati, 45229 OH USA","Department of Biology Sciences, Purdue University, 249 S Martin Jischke Dr, West Lafayette, 47907, IN, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"2Department of Biology Sciences, Purdue University, 249 S Martin Jischke Dr, West Lafayette, 47907 IN USA","institution_ids":["https://openalex.org/I219193219"]},{"raw_affiliation_string":"3Department of Computer Science, Purdue University, 305 N University Street, West Lafayette, 47907 IN USA","institution_ids":["https://openalex.org/I219193219"]},{"raw_affiliation_string":"4Department of Pediatrics, Cincinnati Children's Hospital Medical Care, University of Cincinnati, Cincinnati, 45229 OH USA","institution_ids":["https://openalex.org/I1285204247"]},{"raw_affiliation_string":"Department of Biology Sciences, Purdue University, 249 S Martin Jischke Dr, West Lafayette, 47907, IN, USA","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5050325009","display_name":"Atilla Sit","orcid":"https://orcid.org/0000-0002-7840-6348"},"institutions":[{"id":"https://openalex.org/I110325482","display_name":"Eastern Kentucky University","ror":"https://ror.org/012xks909","country_code":"US","type":"education","lineage":["https://openalex.org/I110325482"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Atilla Sit","raw_affiliation_strings":["1Department of Mathematics and Statistics, Eastern Kentucky University, 521 Lancaster Ave., Richmond, 40475 KY USA","Department of Mathematics and Statistics, Eastern Kentucky University, 521 Lancaster Ave., Richmond, 40475, KY, USA"],"raw_orcid":"https://orcid.org/0000-0002-7840-6348","affiliations":[{"raw_affiliation_string":"1Department of Mathematics and Statistics, Eastern Kentucky University, 521 Lancaster Ave., Richmond, 40475 KY USA","institution_ids":["https://openalex.org/I110325482"]},{"raw_affiliation_string":"Department of Mathematics and Statistics, Eastern Kentucky University, 521 Lancaster Ave., Richmond, 40475, KY, USA","institution_ids":["https://openalex.org/I110325482"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5081432577"],"corresponding_institution_ids":["https://openalex.org/I110325482"],"apc_list":null,"apc_paid":null,"fwci":0.2259,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.72765447,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"15","issue":"1","first_page":"1","last_page":"1"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.35510000586509705,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.35510000586509705,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10824","display_name":"Image Retrieval and Classification Techniques","score":0.2809999883174896,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10857","display_name":"Advanced Electron Microscopy Techniques and Applications","score":0.05860000103712082,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8281267285346985},{"id":"https://openalex.org/keywords/image-translation","display_name":"Image translation","score":0.6000963449478149},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5943121314048767},{"id":"https://openalex.org/keywords/invariant","display_name":"Invariant (physics)","score":0.5894069075584412},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.5276656746864319},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.4913384020328522},{"id":"https://openalex.org/keywords/rotation","display_name":"Rotation (mathematics)","score":0.4710666537284851},{"id":"https://openalex.org/keywords/image-retrieval","display_name":"Image retrieval","score":0.4573374390602112},{"id":"https://openalex.org/keywords/similitude","display_name":"Similitude","score":0.45117467641830444},{"id":"https://openalex.org/keywords/translation","display_name":"Translation (biology)","score":0.44403475522994995},{"id":"https://openalex.org/keywords/digital-image","display_name":"Digital image","score":0.4431278109550476},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.43709832429885864},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.43676233291625977},{"id":"https://openalex.org/keywords/scaling","display_name":"Scaling","score":0.4166974425315857},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.41081905364990234},{"id":"https://openalex.org/keywords/image-processing","display_name":"Image processing","score":0.33987295627593994},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.0928536057472229}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8281267285346985},{"id":"https://openalex.org/C2779757391","wikidata":"https://www.wikidata.org/wiki/Q6002292","display_name":"Image translation","level":3,"score":0.6000963449478149},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5943121314048767},{"id":"https://openalex.org/C190470478","wikidata":"https://www.wikidata.org/wiki/Q2370229","display_name":"Invariant (physics)","level":2,"score":0.5894069075584412},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.5276656746864319},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.4913384020328522},{"id":"https://openalex.org/C74050887","wikidata":"https://www.wikidata.org/wiki/Q848368","display_name":"Rotation (mathematics)","level":2,"score":0.4710666537284851},{"id":"https://openalex.org/C1667742","wikidata":"https://www.wikidata.org/wiki/Q10927554","display_name":"Image retrieval","level":3,"score":0.4573374390602112},{"id":"https://openalex.org/C143271835","wikidata":"https://www.wikidata.org/wiki/Q254515","display_name":"Similitude","level":2,"score":0.45117467641830444},{"id":"https://openalex.org/C149364088","wikidata":"https://www.wikidata.org/wiki/Q185917","display_name":"Translation (biology)","level":4,"score":0.44403475522994995},{"id":"https://openalex.org/C42781572","wikidata":"https://www.wikidata.org/wiki/Q1250322","display_name":"Digital image","level":4,"score":0.4431278109550476},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.43709832429885864},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.43676233291625977},{"id":"https://openalex.org/C99844830","wikidata":"https://www.wikidata.org/wiki/Q102441924","display_name":"Scaling","level":2,"score":0.4166974425315857},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.41081905364990234},{"id":"https://openalex.org/C9417928","wikidata":"https://www.wikidata.org/wiki/Q1070689","display_name":"Image processing","level":3,"score":0.33987295627593994},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0928536057472229},{"id":"https://openalex.org/C105580179","wikidata":"https://www.wikidata.org/wiki/Q188928","display_name":"Messenger RNA","level":3,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C37914503","wikidata":"https://www.wikidata.org/wiki/Q156495","display_name":"Mathematical physics","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1186/s13029-020-0077-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13029-020-0077-1","pdf_url":"https://scfbm.biomedcentral.com/track/pdf/10.1186/s13029-020-0077-1.pdf","source":{"id":"https://openalex.org/S45786803","display_name":"Source Code for Biology and Medicine","issn_l":"1751-0473","issn":["1751-0473"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source Code for Biology and Medicine","raw_type":"journal-article"},{"id":"pmid:32064000","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32064000","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source code for biology and medicine","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7011505","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7011505","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Source Code Biol Med","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13029-020-0077-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13029-020-0077-1","pdf_url":"https://scfbm.biomedcentral.com/track/pdf/10.1186/s13029-020-0077-1.pdf","source":{"id":"https://openalex.org/S45786803","display_name":"Source Code for Biology and Medicine","issn_l":"1751-0473","issn":["1751-0473"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source Code for Biology and Medicine","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2919728590","display_name":null,"funder_award_id":"CMMI1825941","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4202522359","display_name":null,"funder_award_id":"R01GM123055","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4781403515","display_name":null,"funder_award_id":"DMS1614661","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5601722728","display_name":null,"funder_award_id":"CMMI1825941","funder_id":"https://openalex.org/F4320337391","funder_display_name":"Division of Civil, Mechanical and Manufacturing Innovation"},{"id":"https://openalex.org/G6575698428","display_name":null,"funder_award_id":"DMS1614777","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320309036","display_name":"Purdue University","ror":"https://ror.org/02dqehb95"},{"id":"https://openalex.org/F4320316710","display_name":"Purdue Institute for Drug Discovery","ror":null},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337391","display_name":"Division of Civil, Mechanical and Manufacturing Innovation","ror":"https://ror.org/028yd4c30"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3012773211.pdf","grobid_xml":"https://content.openalex.org/works/W3012773211.grobid-xml"},"referenced_works_count":10,"referenced_works":["https://openalex.org/W67289394","https://openalex.org/W2033412220","https://openalex.org/W2047902460","https://openalex.org/W2070741080","https://openalex.org/W2086936614","https://openalex.org/W2102238397","https://openalex.org/W2145908554","https://openalex.org/W2736291334","https://openalex.org/W2908346744","https://openalex.org/W2938196680"],"related_works":["https://openalex.org/W1976745436","https://openalex.org/W3036827782","https://openalex.org/W2586799187","https://openalex.org/W1504972346","https://openalex.org/W2951194758","https://openalex.org/W2356087891","https://openalex.org/W2553152692","https://openalex.org/W1997609524","https://openalex.org/W2183514925","https://openalex.org/W2348439329"],"abstract_inverted_index":{"BACKGROUND:":[0],"Direct":[1],"comparison":[2,152],"of":[3,18,40,43,89,175],"2D":[4,79],"images":[5,20,41,131],"is":[6,42],"computationally":[7],"inefficient":[8],"due":[9,165],"to":[10,21,73,120,166,190],"the":[11,19,170,176,182],"need":[12],"for":[13,94,123,141],"translation,":[14],"rotation,":[15,171],"and":[16,33,104,132,146,153,163,173,195],"scaling":[17],"evaluate":[22],"their":[23,147],"similarity.":[24],"In":[25],"many":[26],"biological":[27],"applications,":[28],"such":[29,168],"as":[30,169],"digital":[31],"pathology":[32],"cryo-EM,":[34],"often":[35],"identifying":[36],"specific":[37],"local":[38,54,75,96,125],"regions":[39],"particular":[44],"interest.":[45],"Therefore,":[46],"finding":[47],"invariant":[48,90],"descriptors":[49,91,118,187],"that":[50,71,116,137],"can":[51,138,156,197],"efficiently":[52],"retrieve":[53],"image":[55,93,97,103,151],"patches":[56],"or":[57,127],"subimages":[58],"becomes":[59],"necessary.":[60],"RESULTS:":[61],"We":[62,114],"present":[63],"a":[64,86,110,192],"software":[65,144],"package":[66],"called":[67],"Two-Dimensional":[68],"Krawtchouk":[69],"Descriptors":[70],"allows":[72],"perform":[74],"subimage":[76,154],"search":[77,155],"in":[78,130,159,178],"images.":[80],"The":[81],"new":[82],"toolkit":[83],"uses":[84],"only":[85],"small":[87,128],"number":[88],"per":[92],"efficient":[95],"retrieval.":[98],"This":[99],"enables":[100],"querying":[101],"an":[102],"comparing":[105],"similar":[106],"patterns":[107,126],"locally":[108],"across":[109],"potentially":[111],"large":[112],"database.":[113],"show":[115],"these":[117],"appear":[119],"be":[121,139,198],"useful":[122],"searching":[124],"particles":[129],"demonstrate":[133],"some":[134],"test":[135],"cases":[136],"helpful":[140],"both":[142,160],"assembly":[143],"developers":[145],"users.":[148],"CONCLUSIONS:":[149],"Local":[150],"prove":[157],"cumbersome":[158],"computational":[161],"complexity":[162],"runtime,":[164],"factors":[167],"scaling,":[172],"translation":[174],"object":[177],"question.":[179],"By":[180],"using":[181],"2DKD":[183],"toolkit,":[184],"relatively":[185],"few":[186],"are":[188],"developed":[189],"describe":[191],"given":[193],"image,":[194],"this":[196],"achieved":[199],"with":[200],"minimal":[201],"memory":[202],"usage.":[203]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
