{"id":"https://openalex.org/W2475328579","doi":"https://doi.org/10.1186/s13029-016-0055-9","title":"Log::ProgramInfo: A Perl module to collect and log data for bioinformatics pipelines","display_name":"Log::ProgramInfo: A Perl module to collect and log data for bioinformatics pipelines","publication_year":2016,"publication_date":"2016-06-24","ids":{"openalex":"https://openalex.org/W2475328579","doi":"https://doi.org/10.1186/s13029-016-0055-9","mag":"2475328579","pmid":"https://pubmed.ncbi.nlm.nih.gov/27347003"},"language":"en","primary_location":{"id":"doi:10.1186/s13029-016-0055-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13029-016-0055-9","pdf_url":"https://scfbm.biomedcentral.com/counter/pdf/10.1186/s13029-016-0055-9","source":{"id":"https://openalex.org/S45786803","display_name":"Source Code for Biology and Medicine","issn_l":"1751-0473","issn":["1751-0473"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source Code for Biology and Medicine","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://scfbm.biomedcentral.com/counter/pdf/10.1186/s13029-016-0055-9","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046506239","display_name":"John M. MacDonald","orcid":"https://orcid.org/0000-0001-6714-8905"},"institutions":[{"id":"https://openalex.org/I112260969","display_name":"Ontario Institute for Cancer Research","ror":"https://ror.org/043q8yx54","country_code":"CA","type":"funder","lineage":["https://openalex.org/I112260969"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"John M. Macdonald","raw_affiliation_strings":["Informatics and Biocomputing Program, Ontario Institute for Cancer Research, Suite 510, MaRS Centre, 661 University Ave, Toronto, Ontario Canada","Informatics and Biocomputing Program, Ontario Institute for Cancer Research, Suite 510, MaRS Centre, 661 University Ave, Toronto, Ontario, Canada"],"affiliations":[{"raw_affiliation_string":"Informatics and Biocomputing Program, Ontario Institute for Cancer Research, Suite 510, MaRS Centre, 661 University Ave, Toronto, Ontario Canada","institution_ids":[]},{"raw_affiliation_string":"Informatics and Biocomputing Program, Ontario Institute for Cancer Research, Suite 510, MaRS Centre, 661 University Ave, Toronto, Ontario, Canada","institution_ids":["https://openalex.org/I112260969"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5007657275","display_name":"Paul C. Boutros","orcid":"https://orcid.org/0000-0003-0553-7520"},"institutions":[{"id":"https://openalex.org/I112260969","display_name":"Ontario Institute for Cancer Research","ror":"https://ror.org/043q8yx54","country_code":"CA","type":"funder","lineage":["https://openalex.org/I112260969"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Paul C. Boutros","raw_affiliation_strings":["Departments of Medical Biophysics and Pharmacology & Toxicology, University of Toronto, Toronto, Ontario Canada","Informatics and Biocomputing Program, Ontario Institute for Cancer Research, Suite 510, MaRS Centre, 661 University Ave, Toronto, Ontario Canada","Informatics and Biocomputing Program, Ontario Institute for Cancer Research, Suite 510, MaRS Centre, 661 University Ave, Toronto, Ontario, Canada"],"affiliations":[{"raw_affiliation_string":"Departments of Medical Biophysics and Pharmacology & Toxicology, University of Toronto, Toronto, Ontario Canada","institution_ids":[]},{"raw_affiliation_string":"Informatics and Biocomputing Program, Ontario Institute for Cancer Research, Suite 510, MaRS Centre, 661 University Ave, Toronto, Ontario Canada","institution_ids":[]},{"raw_affiliation_string":"Informatics and Biocomputing Program, Ontario Institute for Cancer Research, Suite 510, MaRS Centre, 661 University Ave, Toronto, Ontario, Canada","institution_ids":["https://openalex.org/I112260969"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5046506239"],"corresponding_institution_ids":["https://openalex.org/I112260969"],"apc_list":null,"apc_paid":null,"fwci":0.3486,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.68796526,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"11","issue":"1","first_page":"9","last_page":"9"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9847999811172485,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9739000201225281,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/perl","display_name":"Perl","score":0.9047067165374756},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8115975856781006},{"id":"https://openalex.org/keywords/debugging","display_name":"Debugging","score":0.699604868888855},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.4547145366668701},{"id":"https://openalex.org/keywords/web-log-analysis-software","display_name":"Web log analysis software","score":0.44658687710762024},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.42735376954078674},{"id":"https://openalex.org/keywords/order","display_name":"Order (exchange)","score":0.4248157739639282},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3732897639274597},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.35269302129745483}],"concepts":[{"id":"https://openalex.org/C2777002779","wikidata":"https://www.wikidata.org/wiki/Q42478","display_name":"Perl","level":2,"score":0.9047067165374756},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8115975856781006},{"id":"https://openalex.org/C168065819","wikidata":"https://www.wikidata.org/wiki/Q845566","display_name":"Debugging","level":2,"score":0.699604868888855},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.4547145366668701},{"id":"https://openalex.org/C104352257","wikidata":"https://www.wikidata.org/wiki/Q1238961","display_name":"Web log analysis software","level":5,"score":0.44658687710762024},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.42735376954078674},{"id":"https://openalex.org/C182306322","wikidata":"https://www.wikidata.org/wiki/Q1779371","display_name":"Order (exchange)","level":2,"score":0.4248157739639282},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3732897639274597},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.35269302129745483},{"id":"https://openalex.org/C173576120","wikidata":"https://www.wikidata.org/wiki/Q2641220","display_name":"Static web page","level":4,"score":0.0},{"id":"https://openalex.org/C61096286","wikidata":"https://www.wikidata.org/wiki/Q7978592","display_name":"Web navigation","level":3,"score":0.0},{"id":"https://openalex.org/C10138342","wikidata":"https://www.wikidata.org/wiki/Q43015","display_name":"Finance","level":1,"score":0.0},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[],"locations_count":7,"locations":[{"id":"doi:10.1186/s13029-016-0055-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13029-016-0055-9","pdf_url":"https://scfbm.biomedcentral.com/counter/pdf/10.1186/s13029-016-0055-9","source":{"id":"https://openalex.org/S45786803","display_name":"Source Code for Biology and Medicine","issn_l":"1751-0473","issn":["1751-0473"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source Code for Biology and Medicine","raw_type":"journal-article"},{"id":"pmid:27347003","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27347003","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source code for biology and medicine","raw_type":null},{"id":"pmh:oai:utoronto.scholaris.ca:1807/85886","is_oa":true,"landing_page_url":"http://hdl.handle.net/1807/85886","pdf_url":"https://utoronto.scholaris.ca/bitstreams/1d9cf817-895f-48fe-8308-228859b912a6/download","source":{"id":"https://openalex.org/S7407055458","display_name":"TSpace","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"pmh:ark:/13030/qt9wp233x4","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:escholarship.org/ark:/13030/qt9wp233x4","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/9wp233x4","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Source code for biology and medicine, vol 11, iss 1","raw_type":"article"},{"id":"pmh:oai:localhost:1807/85886","is_oa":false,"landing_page_url":"http://doi.org/10.1186/s13029-016-0055-9","pdf_url":null,"source":{"id":"https://openalex.org/S4306400261","display_name":"TSpace (University of Toronto)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I185261750","host_organization_name":"University of Toronto","host_organization_lineage":["https://openalex.org/I185261750"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:4919834","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4919834","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Source Code Biol Med","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13029-016-0055-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13029-016-0055-9","pdf_url":"https://scfbm.biomedcentral.com/counter/pdf/10.1186/s13029-016-0055-9","source":{"id":"https://openalex.org/S45786803","display_name":"Source Code for Biology and Medicine","issn_l":"1751-0473","issn":["1751-0473"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source Code for Biology and Medicine","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1770119559","display_name":null,"funder_award_id":"2014-01","funder_id":"https://openalex.org/F4320319921","funder_display_name":"Prostate Cancer Canada"},{"id":"https://openalex.org/G2725225384","display_name":null,"funder_award_id":"2014-01","funder_id":"https://openalex.org/F4320310747","funder_display_name":"Movember Foundation"},{"id":"https://openalex.org/G3052155850","display_name":null,"funder_award_id":"Ontario Institute for Cancer Research","funder_id":"https://openalex.org/F4320334506","funder_display_name":"Canadian Institutes of Health Research"},{"id":"https://openalex.org/G3570834927","display_name":null,"funder_award_id":"Cancer C","funder_id":"https://openalex.org/F4320334506","funder_display_name":"Canadian Institutes of Health Research"},{"id":"https://openalex.org/G3969565085","display_name":null,"funder_award_id":"Foundation","funder_id":"https://openalex.org/F4320334506","funder_display_name":"Canadian Institutes of Health Research"},{"id":"https://openalex.org/G4389354971","display_name":null,"funder_award_id":"Research","funder_id":"https://openalex.org/F4320334506","funder_display_name":"Canadian Institutes of Health Research"},{"id":"https://openalex.org/G4409028540","display_name":null,"funder_award_id":"New Investigator Award","funder_id":"https://openalex.org/F4320322597","funder_display_name":"Terry Fox Research Institute"},{"id":"https://openalex.org/G4555984808","display_name":null,"funder_award_id":"#RS2014-01","funder_id":"https://openalex.org/F4320310747","funder_display_name":"Movember Foundation"},{"id":"https://openalex.org/G5255626051","display_name":null,"funder_award_id":"RS2014-01","funder_id":"https://openalex.org/F4320319921","funder_display_name":"Prostate Cancer Canada"},{"id":"https://openalex.org/G551170874","display_name":null,"funder_award_id":"Large-Scale Applied Project","funder_id":"https://openalex.org/F4320310787","funder_display_name":"Genome Canada"},{"id":"https://openalex.org/G5782839332","display_name":null,"funder_award_id":"New Investigator","funder_id":"https://openalex.org/F4320334506","funder_display_name":"Canadian Institutes of Health Research"},{"id":"https://openalex.org/G7429694812","display_name":null,"funder_award_id":"RS2014-01","funder_id":"https://openalex.org/F4320310747","funder_display_name":"Movember Foundation"},{"id":"https://openalex.org/G8520920988","display_name":null,"funder_award_id":"Ontario","funder_id":"https://openalex.org/F4320314607","funder_display_name":"Government of Ontario"},{"id":"https://openalex.org/G8622201171","display_name":null,"funder_award_id":"New Investigator Award","funder_id":"https://openalex.org/F4320319921","funder_display_name":"Prostate Cancer Canada"}],"funders":[{"id":"https://openalex.org/F4320310747","display_name":"Movember Foundation","ror":"https://ror.org/040eybd64"},{"id":"https://openalex.org/F4320310787","display_name":"Genome Canada","ror":"https://ror.org/029s29983"},{"id":"https://openalex.org/F4320313290","display_name":"Ontario Institute for Cancer Research","ror":"https://ror.org/043q8yx54"},{"id":"https://openalex.org/F4320314607","display_name":"Government of Ontario","ror":"https://ror.org/015pzp858"},{"id":"https://openalex.org/F4320319921","display_name":"Prostate Cancer Canada","ror":"https://ror.org/03p641z80"},{"id":"https://openalex.org/F4320322597","display_name":"Terry Fox Research Institute","ror":"https://ror.org/05vd00053"},{"id":"https://openalex.org/F4320334506","display_name":"Canadian Institutes of Health Research","ror":"https://ror.org/01gavpb45"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2475328579.pdf","grobid_xml":"https://content.openalex.org/works/W2475328579.grobid-xml"},"referenced_works_count":6,"referenced_works":["https://openalex.org/W1565378970","https://openalex.org/W1659560869","https://openalex.org/W2131966673","https://openalex.org/W2150934173","https://openalex.org/W2475328579","https://openalex.org/W4249938874"],"related_works":["https://openalex.org/W2480056510","https://openalex.org/W2412623563","https://openalex.org/W190299232","https://openalex.org/W1521481095","https://openalex.org/W594361471","https://openalex.org/W2604964690","https://openalex.org/W2417897055","https://openalex.org/W1538349749","https://openalex.org/W2992663142","https://openalex.org/W2061417947"],"abstract_inverted_index":{"Using":[0],"Log::ProgramInfo":[1,13],"in":[2],"programs":[3],"creating":[4],"result":[5],"data":[6],"for":[7],"publishable":[8],"research,":[9],"and":[10],"including":[11],"the":[12,19,33],"output":[14],"log":[15],"as":[16,36],"part":[17],"of":[18,21],"publication":[20],"that":[22,43],"research":[23],"is":[24],"a":[25,37],"valuable":[26],"method":[27],"to":[28,31,39],"assist":[29],"others":[30],"duplicate":[32],"programming":[34],"environment":[35],"precursor":[38],"validating":[40],"and/or":[41],"extending":[42],"research.":[44]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2016,"cited_by_count":2}],"updated_date":"2026-04-14T08:04:32.555800","created_date":"2025-10-10T00:00:00"}
