{"id":"https://openalex.org/W4413308490","doi":"https://doi.org/10.1186/s13015-025-00284-8","title":"The path-label reconciliation (PLR) dissimilarity measure for gene trees","display_name":"The path-label reconciliation (PLR) dissimilarity measure for gene trees","publication_year":2025,"publication_date":"2025-08-19","ids":{"openalex":"https://openalex.org/W4413308490","doi":"https://doi.org/10.1186/s13015-025-00284-8","pmid":"https://pubmed.ncbi.nlm.nih.gov/40830793"},"language":"en","primary_location":{"id":"doi:10.1186/s13015-025-00284-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13015-025-00284-8","pdf_url":"https://almob.biomedcentral.com/counter/pdf/10.1186/s13015-025-00284-8","source":{"id":"https://openalex.org/S205663195","display_name":"Algorithms for Molecular Biology","issn_l":"1748-7188","issn":["1748-7188"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for Molecular Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://almob.biomedcentral.com/counter/pdf/10.1186/s13015-025-00284-8","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5054436008","display_name":"Alitzel L\u00f3pez S\u00e1nchez","orcid":"https://orcid.org/0000-0002-3545-039X"},"institutions":[{"id":"https://openalex.org/I135117807","display_name":"Universit\u00e9 de Sherbrooke","ror":"https://ror.org/00kybxq39","country_code":"CA","type":"education","lineage":["https://openalex.org/I135117807"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Alitzel L\u00f3pez S\u00e1nchez","raw_affiliation_strings":["Department of Computer Science, University of Sherbrooke, 2500 Bd de l'Universit\u00e9, J1K2R1, Sherbrooke, QC, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Sherbrooke, 2500 Bd de l'Universit\u00e9, J1K2R1, Sherbrooke, QC, Canada","institution_ids":["https://openalex.org/I135117807"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013261868","display_name":"Jos\u00e9 Antonio Ram\u00edrez-Rafael","orcid":"https://orcid.org/0000-0003-3800-2434"},"institutions":[{"id":"https://openalex.org/I4210091327","display_name":"Max Planck Institute for Mathematics in the Sciences","ror":"https://ror.org/00ez2he07","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210091327"]},{"id":"https://openalex.org/I40900055","display_name":"Telstra (Australia)","ror":"https://ror.org/04g047260","country_code":"AU","type":"company","lineage":["https://openalex.org/I40900055"]},{"id":"https://openalex.org/I4210119712","display_name":"Max Planck Institute for Mathematics","ror":"https://ror.org/02dh8ja68","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210119712"]},{"id":"https://openalex.org/I38234673","display_name":"Instituto Tecnol\u00f3gico Superior de Irapuato","ror":"https://ror.org/01da06998","country_code":"MX","type":"education","lineage":["https://openalex.org/I1302736544","https://openalex.org/I38234673","https://openalex.org/I4210090124","https://openalex.org/I4413696010"]},{"id":"https://openalex.org/I926574661","display_name":"Leipzig University","ror":"https://ror.org/03s7gtk40","country_code":"DE","type":"education","lineage":["https://openalex.org/I926574661"]}],"countries":["AU","DE","MX"],"is_corresponding":false,"raw_author_name":"Jos\u00e9 Antonio Ram\u00edrez-Rafael","raw_affiliation_strings":["Department of Computer Science and Interdisciplinary Center for Bioinformatics, University of Leipzig, H\u00e4rtelstr. 16-18, 04107, Leipzig, Saxony, Germany","Department of Genetic Engineering, Center for Research and Advanced Studies of the National Polytechnic Institute, Libramiento Norte Carretera Irapuato Le\u00f3n Kil\u00f3metro 9.6, Carr Panamericana Irapuato Le\u00f3n, 36821, Irapuato, Guanajuato, Mexico","Max Planck Institute for Mathematics in the Sciences, MPI MIS, Inselstra\u00dfe 22, 04103, Leipzig, Saxony, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Interdisciplinary Center for Bioinformatics, University of Leipzig, H\u00e4rtelstr. 16-18, 04107, Leipzig, Saxony, Germany","institution_ids":["https://openalex.org/I40900055","https://openalex.org/I926574661"]},{"raw_affiliation_string":"Department of Genetic Engineering, Center for Research and Advanced Studies of the National Polytechnic Institute, Libramiento Norte Carretera Irapuato Le\u00f3n Kil\u00f3metro 9.6, Carr Panamericana Irapuato Le\u00f3n, 36821, Irapuato, Guanajuato, Mexico","institution_ids":["https://openalex.org/I38234673"]},{"raw_affiliation_string":"Max Planck Institute for Mathematics in the Sciences, MPI MIS, Inselstra\u00dfe 22, 04103, Leipzig, Saxony, Germany","institution_ids":["https://openalex.org/I4210091327","https://openalex.org/I4210119712"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046742840","display_name":"Alejandro Flores-Lamas","orcid":"https://orcid.org/0000-0002-9637-2049"},"institutions":[{"id":"https://openalex.org/I38234673","display_name":"Instituto Tecnol\u00f3gico Superior de Irapuato","ror":"https://ror.org/01da06998","country_code":"MX","type":"education","lineage":["https://openalex.org/I1302736544","https://openalex.org/I38234673","https://openalex.org/I4210090124","https://openalex.org/I4413696010"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Alejandro Flores-Lamas","raw_affiliation_strings":["Department of Genetic Engineering, Center for Research and Advanced Studies of the National Polytechnic Institute, Libramiento Norte Carretera Irapuato Le\u00f3n Kil\u00f3metro 9.6, Carr Panamericana Irapuato Le\u00f3n, 36821, Irapuato, Guanajuato, Mexico"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetic Engineering, Center for Research and Advanced Studies of the National Polytechnic Institute, Libramiento Norte Carretera Irapuato Le\u00f3n Kil\u00f3metro 9.6, Carr Panamericana Irapuato Le\u00f3n, 36821, Irapuato, Guanajuato, Mexico","institution_ids":["https://openalex.org/I38234673"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037904080","display_name":"Maribel Hern\u00e1ndez-Rosales","orcid":"https://orcid.org/0000-0003-1878-1223"},"institutions":[{"id":"https://openalex.org/I38234673","display_name":"Instituto Tecnol\u00f3gico Superior de Irapuato","ror":"https://ror.org/01da06998","country_code":"MX","type":"education","lineage":["https://openalex.org/I1302736544","https://openalex.org/I38234673","https://openalex.org/I4210090124","https://openalex.org/I4413696010"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Maribel Hern\u00e1ndez-Rosales","raw_affiliation_strings":["Department of Genetic Engineering, Center for Research and Advanced Studies of the National Polytechnic Institute, Libramiento Norte Carretera Irapuato Le\u00f3n Kil\u00f3metro 9.6, Carr Panamericana Irapuato Le\u00f3n, 36821, Irapuato, Guanajuato, Mexico. maribel.hr@cinvestav.mx","Department of Genetic Engineering, Center for Research and Advanced Studies of the National Polytechnic Institute, Libramiento Norte Carretera Irapuato Le\u00f3n Kil\u00f3metro 9.6, Carr Panamericana Irapuato Le\u00f3n, 36821, Irapuato, Guanajuato, Mexico"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetic Engineering, Center for Research and Advanced Studies of the National Polytechnic Institute, Libramiento Norte Carretera Irapuato Le\u00f3n Kil\u00f3metro 9.6, Carr Panamericana Irapuato Le\u00f3n, 36821, Irapuato, Guanajuato, Mexico. maribel.hr@cinvestav.mx","institution_ids":[]},{"raw_affiliation_string":"Department of Genetic Engineering, Center for Research and Advanced Studies of the National Polytechnic Institute, Libramiento Norte Carretera Irapuato Le\u00f3n Kil\u00f3metro 9.6, Carr Panamericana Irapuato Le\u00f3n, 36821, Irapuato, Guanajuato, Mexico","institution_ids":["https://openalex.org/I38234673"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016796629","display_name":"Manuel Lafond","orcid":"https://orcid.org/0000-0002-5305-7372"},"institutions":[{"id":"https://openalex.org/I135117807","display_name":"Universit\u00e9 de Sherbrooke","ror":"https://ror.org/00kybxq39","country_code":"CA","type":"education","lineage":["https://openalex.org/I135117807"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Manuel Lafond","raw_affiliation_strings":["Department of Computer Science, University of Sherbrooke, 2500 Bd de l'Universit\u00e9, J1K2R1, Sherbrooke, QC, Canada. manuel.lafond@usherbrooke.ca","Department of Computer Science, University of Sherbrooke, 2500 Bd de l'Universit\u00e9, J1K2R1, Sherbrooke, QC, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Sherbrooke, 2500 Bd de l'Universit\u00e9, J1K2R1, Sherbrooke, QC, Canada. manuel.lafond@usherbrooke.ca","institution_ids":[]},{"raw_affiliation_string":"Department of Computer Science, University of Sherbrooke, 2500 Bd de l'Universit\u00e9, J1K2R1, Sherbrooke, QC, Canada","institution_ids":["https://openalex.org/I135117807"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5054436008"],"corresponding_institution_ids":["https://openalex.org/I135117807"],"apc_list":{"value":1490,"currency":"GBP","value_usd":1827},"apc_paid":{"value":1490,"currency":"GBP","value_usd":1827},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.17604223,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"20","issue":"1","first_page":"16","last_page":"16"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9887999892234802,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metric","display_name":"Metric (unit)","score":0.7066975235939026},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6739857196807861},{"id":"https://openalex.org/keywords/measure","display_name":"Measure (data warehouse)","score":0.6439045667648315},{"id":"https://openalex.org/keywords/normalization","display_name":"Normalization (sociology)","score":0.6021298766136169},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.5981230735778809},{"id":"https://openalex.org/keywords/path","display_name":"Path (computing)","score":0.5251013040542603},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.46683087944984436},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.46092459559440613},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.33656078577041626},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.33029186725616455},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.269514799118042},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.19970661401748657}],"concepts":[{"id":"https://openalex.org/C176217482","wikidata":"https://www.wikidata.org/wiki/Q860554","display_name":"Metric (unit)","level":2,"score":0.7066975235939026},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6739857196807861},{"id":"https://openalex.org/C2780009758","wikidata":"https://www.wikidata.org/wiki/Q6804172","display_name":"Measure (data warehouse)","level":2,"score":0.6439045667648315},{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.6021298766136169},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.5981230735778809},{"id":"https://openalex.org/C2777735758","wikidata":"https://www.wikidata.org/wiki/Q817765","display_name":"Path (computing)","level":2,"score":0.5251013040542603},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.46683087944984436},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.46092459559440613},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.33656078577041626},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.33029186725616455},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.269514799118042},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.19970661401748657},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/s13015-025-00284-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13015-025-00284-8","pdf_url":"https://almob.biomedcentral.com/counter/pdf/10.1186/s13015-025-00284-8","source":{"id":"https://openalex.org/S205663195","display_name":"Algorithms for Molecular Biology","issn_l":"1748-7188","issn":["1748-7188"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for Molecular Biology","raw_type":"journal-article"},{"id":"pmid:40830793","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40830793","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for molecular biology : AMB","raw_type":null},{"id":"pmh:oai:doaj.org/article:bcd000c1dbc342ec8dc175c8cec9b1c2","is_oa":true,"landing_page_url":"https://doaj.org/article/bcd000c1dbc342ec8dc175c8cec9b1c2","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Algorithms for Molecular Biology, Vol 20, Iss 1, Pp 1-22 (2025)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:12366074","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12366074","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Algorithms Mol Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13015-025-00284-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13015-025-00284-8","pdf_url":"https://almob.biomedcentral.com/counter/pdf/10.1186/s13015-025-00284-8","source":{"id":"https://openalex.org/S205663195","display_name":"Algorithms for Molecular Biology","issn_l":"1748-7188","issn":["1748-7188"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for Molecular Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320311614","display_name":"Universit\u00e9 de Sherbrooke","ror":"https://ror.org/00kybxq39"},{"id":"https://openalex.org/F4320321739","display_name":"Consejo Nacional de Ciencia y Tecnolog\u00eda","ror":"https://ror.org/059ex5q34"},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"},{"id":"https://openalex.org/F4320334841","display_name":"Fonds de recherche du Qu\u00e9bec \u2013 Nature et technologies","ror":"https://ror.org/00b9f9778"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4413308490.pdf","grobid_xml":"https://content.openalex.org/works/W4413308490.grobid-xml"},"referenced_works_count":70,"referenced_works":["https://openalex.org/W39630659","https://openalex.org/W1575387405","https://openalex.org/W1848641690","https://openalex.org/W1931647778","https://openalex.org/W1978858440","https://openalex.org/W1979257831","https://openalex.org/W2001076853","https://openalex.org/W2004575303","https://openalex.org/W2017519756","https://openalex.org/W2041346050","https://openalex.org/W2047479519","https://openalex.org/W2066393903","https://openalex.org/W2067547496","https://openalex.org/W2068955224","https://openalex.org/W2074494141","https://openalex.org/W2086585172","https://openalex.org/W2087284302","https://openalex.org/W2099388422","https://openalex.org/W2100449089","https://openalex.org/W2108531996","https://openalex.org/W2112755610","https://openalex.org/W2114430361","https://openalex.org/W2120836981","https://openalex.org/W2129505888","https://openalex.org/W2132318428","https://openalex.org/W2135281627","https://openalex.org/W2135869163","https://openalex.org/W2137120608","https://openalex.org/W2139478957","https://openalex.org/W2141052558","https://openalex.org/W2144345157","https://openalex.org/W2144454528","https://openalex.org/W2147496016","https://openalex.org/W2148818018","https://openalex.org/W2157360426","https://openalex.org/W2159447863","https://openalex.org/W2163110946","https://openalex.org/W2170753094","https://openalex.org/W2287141830","https://openalex.org/W2557536938","https://openalex.org/W2577144946","https://openalex.org/W2587569733","https://openalex.org/W2603273139","https://openalex.org/W2618312940","https://openalex.org/W2742336755","https://openalex.org/W2762409740","https://openalex.org/W2765700971","https://openalex.org/W2795914492","https://openalex.org/W2799551362","https://openalex.org/W2890159479","https://openalex.org/W2914560485","https://openalex.org/W2940808208","https://openalex.org/W2945333287","https://openalex.org/W2950514289","https://openalex.org/W2972421638","https://openalex.org/W2977811825","https://openalex.org/W3004232123","https://openalex.org/W3093602888","https://openalex.org/W3103391276","https://openalex.org/W3104455460","https://openalex.org/W3120712761","https://openalex.org/W3180775633","https://openalex.org/W3182507784","https://openalex.org/W3187893169","https://openalex.org/W4226066396","https://openalex.org/W4290465972","https://openalex.org/W4391821711","https://openalex.org/W4394792608","https://openalex.org/W4394914122","https://openalex.org/W4400518676"],"related_works":["https://openalex.org/W2591697403","https://openalex.org/W2944728705","https://openalex.org/W2904022177","https://openalex.org/W2359348847","https://openalex.org/W3011538607","https://openalex.org/W4294432981","https://openalex.org/W4321441197","https://openalex.org/W2953716828","https://openalex.org/W2469820710","https://openalex.org/W4321276295"],"abstract_inverted_index":{"BACKGROUND:":[0],"also":[1,35,109],"allows":[2],"users":[3],"to":[4,90,113],"adjust":[5],"the":[6,37,94,102,115,148,198,204],"balance":[7],"between":[8],"its":[9,173,177],"species":[10],"map":[11],"and":[12,28,51,58,66,71,127,184],"event":[13],"labeling":[14],"components.":[15],"OUR":[16],"CONTRIBUTIONS:":[17],"We":[18,34,108],"show":[19,75],"that":[20,29,76,129,147],"PLR":[21,77,157,199],"can":[22],"be":[23],"computed":[24],"in":[25,47,93,154,203],"linear":[26],"time":[27,104],"it":[30,87,186],"is":[31,132,151,201],"a":[32,79,124],"semi-metric.":[33],"discuss":[36],"diameters":[38],"of":[39,84,96,117,120,182,197],"reconciled":[40],"gene":[41,121,138],"tree":[42,139],"measures,":[43],"which":[44],"are":[45],"important":[46],"practice":[48],"for":[49,191],"normalization,":[50],"provide":[52],"initial":[53],"bounds":[54],"on":[55,179],"PLR,":[56,62],"LRF,":[57],"ELRF.":[59,72],"To":[60],"validate":[61],"we":[63],"simulate":[64],"reconciliations":[65],"perform":[67],"comparisons":[68],"with":[69,166,187],"LRF":[70],"The":[73,156,195],"results":[74],"provides":[78],"more":[80],"evenly":[81],"distributed":[82],"range":[83],"distances,":[85],"making":[86],"less":[88],"susceptible":[89],"overestimating":[91],"differences":[92],"presence":[95],"small":[97],"topological":[98],"changes,":[99],"while":[100],"at":[101,134],"same":[103],"being":[105],"computationally":[106],"efficient.":[107],"apply":[110],"our":[111,130,144],"measure":[112,131,158],"evaluate":[114],"set":[116],"possible":[118],"rootings":[119],"trees":[122],"against":[123],"gold":[125],"standard,":[126],"demonstrate":[128],"better":[133],"distinguishing":[135],"one":[136],"best":[137],"among":[140],"multiple":[141],"candidates.":[142],"Furthermore,":[143],"findings":[145],"suggest":[146],"theoretical":[149,164],"diameter":[150],"rarely":[152],"reached":[153],"practice.":[155],"advances":[159],"phylogenetic":[160],"reconciliation":[161],"by":[162],"combining":[163],"rigor":[165],"practical":[167],"applicability.":[168],"Future":[169],"research":[170],"will":[171],"refine":[172],"mathematical":[174],"properties,":[175],"explore":[176],"performance":[178],"different":[180],"types":[181],"trees,":[183],"integrate":[185],"existing":[188],"bioinformatics":[189],"tools":[190],"large-scale":[192],"evolutionary":[193],"analyses.":[194],"implementation":[196],"distance":[200],"available":[202],"open-source":[205],"PyPI":[206],"package":[207],"parle:":[208],"https://pypi.org/project/parle/":[209],".":[210]},"counts_by_year":[],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
