{"id":"https://openalex.org/W4412708182","doi":"https://doi.org/10.1186/s13015-025-00274-w","title":"NANUQ+: A divide-and-conquer approach to network estimation","display_name":"NANUQ+: A divide-and-conquer approach to network estimation","publication_year":2025,"publication_date":"2025-07-25","ids":{"openalex":"https://openalex.org/W4412708182","doi":"https://doi.org/10.1186/s13015-025-00274-w","pmid":"https://pubmed.ncbi.nlm.nih.gov/40713832"},"language":"en","primary_location":{"id":"doi:10.1186/s13015-025-00274-w","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13015-025-00274-w","pdf_url":"https://link.springer.com/content/pdf/10.1186/s13015-025-00274-w.pdf","source":{"id":"https://openalex.org/S205663195","display_name":"Algorithms for Molecular Biology","issn_l":"1748-7188","issn":["1748-7188"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for Molecular Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://link.springer.com/content/pdf/10.1186/s13015-025-00274-w.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5026382332","display_name":"Elizabeth S. Allman","orcid":"https://orcid.org/0000-0002-4866-9606"},"institutions":[{"id":"https://openalex.org/I141472210","display_name":"University of Alaska Fairbanks","ror":"https://ror.org/01j7nq853","country_code":"US","type":"education","lineage":["https://openalex.org/I141472210"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Elizabeth S. Allman","raw_affiliation_strings":["Department of Mathematics and Statistics, University of Alaska Fairbanks, Fairbanks, AK, USA"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Statistics, University of Alaska Fairbanks, Fairbanks, AK, USA","institution_ids":["https://openalex.org/I141472210"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064252541","display_name":"Hector Ba\u00f1os","orcid":"https://orcid.org/0000-0001-5769-2544"},"institutions":[{"id":"https://openalex.org/I43369023","display_name":"California State University, San Bernardino","ror":"https://ror.org/02n651896","country_code":"US","type":"education","lineage":["https://openalex.org/I43369023"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hector Ba\u00f1os","raw_affiliation_strings":["Department of Mathematics, California State University San Bernardino, San Bernardino, CA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics, California State University San Bernardino, San Bernardino, CA, USA","institution_ids":["https://openalex.org/I43369023"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089193790","display_name":"John A. Rhodes","orcid":"https://orcid.org/0000-0001-9921-1091"},"institutions":[{"id":"https://openalex.org/I141472210","display_name":"University of Alaska Fairbanks","ror":"https://ror.org/01j7nq853","country_code":"US","type":"education","lineage":["https://openalex.org/I141472210"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John A. Rhodes","raw_affiliation_strings":["Department of Mathematics and Statistics, University of Alaska Fairbanks, Fairbanks, AK, USA"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Statistics, University of Alaska Fairbanks, Fairbanks, AK, USA","institution_ids":["https://openalex.org/I141472210"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5039954761","display_name":"Kristina Wicke","orcid":"https://orcid.org/0000-0002-4275-5546"},"institutions":[{"id":"https://openalex.org/I118118575","display_name":"New Jersey Institute of Technology","ror":"https://ror.org/05e74xb87","country_code":"US","type":"education","lineage":["https://openalex.org/I118118575"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Kristina Wicke","raw_affiliation_strings":["Department of Mathematical Sciences, New Jersey Institute of Technology, Newark, NJ, USA. kristina.wicke@njit.edu","Department of Mathematical Sciences, New Jersey Institute of Technology, Newark, NJ, USA"],"affiliations":[{"raw_affiliation_string":"Department of Mathematical Sciences, New Jersey Institute of Technology, Newark, NJ, USA. kristina.wicke@njit.edu","institution_ids":["https://openalex.org/I118118575"]},{"raw_affiliation_string":"Department of Mathematical Sciences, New Jersey Institute of Technology, Newark, NJ, USA","institution_ids":["https://openalex.org/I118118575"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5039954761"],"corresponding_institution_ids":["https://openalex.org/I118118575"],"apc_list":{"value":1490,"currency":"GBP","value_usd":1827},"apc_paid":{"value":1490,"currency":"GBP","value_usd":1827},"fwci":7.068,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.9741549,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"20","issue":"1","first_page":"14","last_page":"14"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9271000027656555,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9271000027656555,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.8537864685058594},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7827586531639099},{"id":"https://openalex.org/keywords/divide-and-conquer-algorithms","display_name":"Divide and conquer algorithms","score":0.7802322506904602},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.6756753921508789},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.5538088083267212},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.45382416248321533},{"id":"https://openalex.org/keywords/resolution","display_name":"Resolution (logic)","score":0.41764652729034424},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3934517204761505},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.37265634536743164},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.34802472591400146},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.34742575883865356},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.21563482284545898},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.12031108140945435},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.06901499629020691}],"concepts":[{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.8537864685058594},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7827586531639099},{"id":"https://openalex.org/C71559656","wikidata":"https://www.wikidata.org/wiki/Q671298","display_name":"Divide and conquer algorithms","level":2,"score":0.7802322506904602},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.6756753921508789},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.5538088083267212},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.45382416248321533},{"id":"https://openalex.org/C138268822","wikidata":"https://www.wikidata.org/wiki/Q1051925","display_name":"Resolution (logic)","level":2,"score":0.41764652729034424},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3934517204761505},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.37265634536743164},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.34802472591400146},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.34742575883865356},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.21563482284545898},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.12031108140945435},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.06901499629020691},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/s13015-025-00274-w","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13015-025-00274-w","pdf_url":"https://link.springer.com/content/pdf/10.1186/s13015-025-00274-w.pdf","source":{"id":"https://openalex.org/S205663195","display_name":"Algorithms for Molecular Biology","issn_l":"1748-7188","issn":["1748-7188"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for Molecular Biology","raw_type":"journal-article"},{"id":"pmid:40713832","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40713832","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for molecular biology : AMB","raw_type":null},{"id":"pmh:oai:doaj.org/article:809c678d226c4170b4e887d9da10eb4b","is_oa":true,"landing_page_url":"https://doaj.org/article/809c678d226c4170b4e887d9da10eb4b","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Algorithms for Molecular Biology, Vol 20, Iss 1, Pp 1-25 (2025)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:12297685","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12297685","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Algorithms Mol Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13015-025-00274-w","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13015-025-00274-w","pdf_url":"https://link.springer.com/content/pdf/10.1186/s13015-025-00274-w.pdf","source":{"id":"https://openalex.org/S205663195","display_name":"Algorithms for Molecular Biology","issn_l":"1748-7188","issn":["1748-7188"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for Molecular Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.5799999833106995}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4412708182.pdf"},"referenced_works_count":33,"referenced_works":["https://openalex.org/W1849663075","https://openalex.org/W2029991569","https://openalex.org/W2055298722","https://openalex.org/W2067121015","https://openalex.org/W2100152398","https://openalex.org/W2145562754","https://openalex.org/W2753562621","https://openalex.org/W2952540487","https://openalex.org/W2952712909","https://openalex.org/W2962725223","https://openalex.org/W2963026941","https://openalex.org/W2963281684","https://openalex.org/W2963525467","https://openalex.org/W2963717225","https://openalex.org/W2963928868","https://openalex.org/W2992645427","https://openalex.org/W3092125241","https://openalex.org/W3128747563","https://openalex.org/W4236590756","https://openalex.org/W4311574484","https://openalex.org/W4311577708","https://openalex.org/W4378783481","https://openalex.org/W4388870450","https://openalex.org/W4391988956","https://openalex.org/W4395479381","https://openalex.org/W4400988409","https://openalex.org/W4402137328","https://openalex.org/W4403301307","https://openalex.org/W4403597245","https://openalex.org/W4404064679","https://openalex.org/W4404541363","https://openalex.org/W4408655239","https://openalex.org/W4408956274"],"related_works":["https://openalex.org/W2352794675","https://openalex.org/W1539994214","https://openalex.org/W2051228988","https://openalex.org/W4247094814","https://openalex.org/W108531593","https://openalex.org/W2111712077","https://openalex.org/W8810113","https://openalex.org/W2158636562","https://openalex.org/W2162911572","https://openalex.org/W2019464130"],"abstract_inverted_index":{"Inference":[0],"of":[1,23,26,28,84],"a":[2,9,29,46,67,78],"species":[3],"network":[4,42,50],"from":[5],"genomic":[6],"data":[7],"remains":[8],"difficult":[10],"problem,":[11],"with":[12],"recent":[13],"progress":[14],"mostly":[15],"limited":[16],"to":[17,49,59,74,104,113],"the":[18,24,33,53,85,99],"level-1":[19,79,90,100],"case.":[20],"However,":[21],"inference":[22,51],"Tree":[25],"Blobs":[27],"network,":[30],"showing":[31],"only":[32],"network's":[34],"cut":[35],"edges,":[36],"can":[37],"be":[38,105],"performed":[39],"for":[40,88,95,108],"any":[41],"by":[43],"TINNiK,":[44],"suggesting":[45],"divide-and-conquer":[47],"approach":[48],"where":[52],"tree's":[54],"multifurcations":[55],"are":[56],"individually":[57],"resolved":[58],"give":[60],"more":[61],"detailed":[62],"structure.":[63],"Here":[64],"we":[65],"develop":[66],"method,":[68],"<mml:math":[69],"xmlns:mml=\"http://www.w3.org/1998/Math/MathML\"><mml:msup><mml:mtext>NANUQ</mml:mtext>":[70],"<mml:mo>+</mml:mo></mml:msup>":[71],"</mml:math>":[72],",":[73],"quickly":[75],"perform":[76],"such":[77],"resolution.":[80],"Viewed":[81],"as":[82],"part":[83],"NANUQ":[86],"pipeline":[87],"fast":[89],"inference,":[91],"this":[92],"gives":[93],"tools":[94],"both":[96],"understanding":[97],"when":[98],"assumption":[101],"is":[102],"likely":[103],"met":[106],"and":[107],"exploring":[109],"all":[110],"highly-supported":[111],"resolutions":[112],"cycles.":[114]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":8}],"updated_date":"2026-04-03T22:45:19.894376","created_date":"2025-07-29T00:00:00"}