{"id":"https://openalex.org/W2985875441","doi":"https://doi.org/10.1186/s13015-019-0156-5","title":"Super short operations on both gene order and intergenic sizes","display_name":"Super short operations on both gene order and intergenic sizes","publication_year":2019,"publication_date":"2019-11-05","ids":{"openalex":"https://openalex.org/W2985875441","doi":"https://doi.org/10.1186/s13015-019-0156-5","mag":"2985875441","pmid":"https://pubmed.ncbi.nlm.nih.gov/31709002"},"language":"en","primary_location":{"id":"doi:10.1186/s13015-019-0156-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13015-019-0156-5","pdf_url":"https://almob.biomedcentral.com/track/pdf/10.1186/s13015-019-0156-5","source":{"id":"https://openalex.org/S205663195","display_name":"Algorithms for Molecular Biology","issn_l":"1748-7188","issn":["1748-7188"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for Molecular Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://almob.biomedcentral.com/track/pdf/10.1186/s13015-019-0156-5","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069714194","display_name":"Andre Rodrigues Oliveira","orcid":"https://orcid.org/0000-0002-0568-1859"},"institutions":[{"id":"https://openalex.org/I181391015","display_name":"Universidade Estadual de Campinas (UNICAMP)","ror":"https://ror.org/04wffgt70","country_code":"BR","type":"education","lineage":["https://openalex.org/I181391015"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"Andre R. Oliveira","raw_affiliation_strings":["1Institute of Computing, University of Campinas, Campinas, Brazil","IC - Institute of Computing [Campinas] (Instituto de Computa\u00e7\u00e3o (IC) Universidade Estadual de Campinas (UNICAMP) Avenida Albert Einstein, 1251 Caixa Postal 6176 13084-971 Campinas, SP - Brazil)"],"raw_orcid":"https://orcid.org/0000-0002-0568-1859","affiliations":[{"raw_affiliation_string":"1Institute of Computing, University of Campinas, Campinas, Brazil","institution_ids":["https://openalex.org/I181391015"]},{"raw_affiliation_string":"IC - Institute of Computing [Campinas] (Instituto de Computa\u00e7\u00e3o (IC) Universidade Estadual de Campinas (UNICAMP) Avenida Albert Einstein, 1251 Caixa Postal 6176 13084-971 Campinas, SP - Brazil)","institution_ids":["https://openalex.org/I181391015"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046031524","display_name":"G\u00e9raldine Jean","orcid":"https://orcid.org/0000-0002-1534-2682"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210117005","display_name":"Laboratoire des Sciences du Num\u00e9rique de Nantes","ror":"https://ror.org/02snf8m58","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100445878","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I4210117005","https://openalex.org/I4210124215","https://openalex.org/I4210127572","https://openalex.org/I4210139971","https://openalex.org/I97188460","https://openalex.org/I97188460"]},{"id":"https://openalex.org/I97188460","display_name":"Nantes Universit\u00e9","ror":"https://ror.org/03gnr7b55","country_code":"FR","type":"education","lineage":["https://openalex.org/I97188460"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"G\u00e9raldine Jean","raw_affiliation_strings":["2LS2N, UMR CNRS 6004, University of Nantes, Nantes, France","LS2N - Laboratoire des Sciences du Num\u00e9rique de Nantes (Universit\u00e9 de Nantes \u2013 facult\u00e9 des Sciences et Techniques (FST)\r\n2 Chemin de la Houssini\u00e8re\r\nBP 92208, 44322 Nantes Cedex 3 - France)"],"raw_orcid":"https://orcid.org/0000-0002-1534-2682","affiliations":[{"raw_affiliation_string":"2LS2N, UMR CNRS 6004, University of Nantes, Nantes, France","institution_ids":["https://openalex.org/I97188460","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"LS2N - Laboratoire des Sciences du Num\u00e9rique de Nantes (Universit\u00e9 de Nantes \u2013 facult\u00e9 des Sciences et Techniques (FST)\r\n2 Chemin de la Houssini\u00e8re\r\nBP 92208, 44322 Nantes Cedex 3 - France)","institution_ids":["https://openalex.org/I4210117005","https://openalex.org/I97188460"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048361747","display_name":"Guillaume Fertin","orcid":"https://orcid.org/0000-0002-8251-2012"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210117005","display_name":"Laboratoire des Sciences du Num\u00e9rique de Nantes","ror":"https://ror.org/02snf8m58","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100445878","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I4210117005","https://openalex.org/I4210124215","https://openalex.org/I4210127572","https://openalex.org/I4210139971","https://openalex.org/I97188460","https://openalex.org/I97188460"]},{"id":"https://openalex.org/I97188460","display_name":"Nantes Universit\u00e9","ror":"https://ror.org/03gnr7b55","country_code":"FR","type":"education","lineage":["https://openalex.org/I97188460"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Guillaume Fertin","raw_affiliation_strings":["2LS2N, UMR CNRS 6004, University of Nantes, Nantes, France","LS2N - Laboratoire des Sciences du Num\u00e9rique de Nantes (Universit\u00e9 de Nantes \u2013 facult\u00e9 des Sciences et Techniques (FST)\r\n2 Chemin de la Houssini\u00e8re\r\nBP 92208, 44322 Nantes Cedex 3 - France)"],"raw_orcid":"https://orcid.org/0000-0002-8251-2012","affiliations":[{"raw_affiliation_string":"2LS2N, UMR CNRS 6004, University of Nantes, Nantes, France","institution_ids":["https://openalex.org/I97188460","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"LS2N - Laboratoire des Sciences du Num\u00e9rique de Nantes (Universit\u00e9 de Nantes \u2013 facult\u00e9 des Sciences et Techniques (FST)\r\n2 Chemin de la Houssini\u00e8re\r\nBP 92208, 44322 Nantes Cedex 3 - France)","institution_ids":["https://openalex.org/I4210117005","https://openalex.org/I97188460"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052555109","display_name":"Ulisses Dias","orcid":"https://orcid.org/0000-0002-4763-3046"},"institutions":[{"id":"https://openalex.org/I181391015","display_name":"Universidade Estadual de Campinas (UNICAMP)","ror":"https://ror.org/04wffgt70","country_code":"BR","type":"education","lineage":["https://openalex.org/I181391015"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Ulisses Dias","raw_affiliation_strings":["3School of Technology, University of Campinas, Limeira, Brazil","UNICAMP - Universidade Estadual de Campinas =  University of Campinas (Cidade Universit\u00e1ria 'Zeferino Vaz'\r\nCEP 13083-970 | Campinas-SP - Brazil)"],"raw_orcid":"https://orcid.org/0000-0002-4763-3046","affiliations":[{"raw_affiliation_string":"3School of Technology, University of Campinas, Limeira, Brazil","institution_ids":["https://openalex.org/I181391015"]},{"raw_affiliation_string":"UNICAMP - Universidade Estadual de Campinas =  University of Campinas (Cidade Universit\u00e1ria 'Zeferino Vaz'\r\nCEP 13083-970 | Campinas-SP - Brazil)","institution_ids":["https://openalex.org/I181391015"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042140271","display_name":"Zanoni Dias","orcid":"https://orcid.org/0000-0003-3333-6822"},"institutions":[{"id":"https://openalex.org/I181391015","display_name":"Universidade Estadual de Campinas (UNICAMP)","ror":"https://ror.org/04wffgt70","country_code":"BR","type":"education","lineage":["https://openalex.org/I181391015"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Zanoni Dias","raw_affiliation_strings":["1Institute of Computing, University of Campinas, Campinas, Brazil","IC - Institute of Computing [Campinas] (Instituto de Computa\u00e7\u00e3o (IC) Universidade Estadual de Campinas (UNICAMP) Avenida Albert Einstein, 1251 Caixa Postal 6176 13084-971 Campinas, SP - Brazil)"],"raw_orcid":"https://orcid.org/0000-0003-3333-6822","affiliations":[{"raw_affiliation_string":"1Institute of Computing, University of Campinas, Campinas, Brazil","institution_ids":["https://openalex.org/I181391015"]},{"raw_affiliation_string":"IC - Institute of Computing [Campinas] (Instituto de Computa\u00e7\u00e3o (IC) Universidade Estadual de Campinas (UNICAMP) Avenida Albert Einstein, 1251 Caixa Postal 6176 13084-971 Campinas, SP - Brazil)","institution_ids":["https://openalex.org/I181391015"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5069714194"],"corresponding_institution_ids":["https://openalex.org/I181391015"],"apc_list":{"value":1490,"currency":"GBP","value_usd":1827},"apc_paid":{"value":1490,"currency":"GBP","value_usd":1827},"fwci":1.2599,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.82148147,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"14","issue":"1","first_page":"21","last_page":"21"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9753999710083008,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.964900016784668,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7862545847892761},{"id":"https://openalex.org/keywords/intergenic-region","display_name":"Intergenic region","score":0.7034127712249756},{"id":"https://openalex.org/keywords/permutation","display_name":"Permutation (music)","score":0.6306850910186768},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5656619668006897},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5561116933822632},{"id":"https://openalex.org/keywords/order","display_name":"Order (exchange)","score":0.5083469748497009},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4550313949584961},{"id":"https://openalex.org/keywords/orientation","display_name":"Orientation (vector space)","score":0.42561665177345276},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.40393534302711487},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.402646005153656},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.38504740595817566},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.36408859491348267},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.34063920378685},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.16563105583190918},{"id":"https://openalex.org/keywords/geometry","display_name":"Geometry","score":0.07478901743888855}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7862545847892761},{"id":"https://openalex.org/C195139083","wikidata":"https://www.wikidata.org/wiki/Q3463539","display_name":"Intergenic region","level":4,"score":0.7034127712249756},{"id":"https://openalex.org/C21308566","wikidata":"https://www.wikidata.org/wiki/Q7169365","display_name":"Permutation (music)","level":2,"score":0.6306850910186768},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5656619668006897},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5561116933822632},{"id":"https://openalex.org/C182306322","wikidata":"https://www.wikidata.org/wiki/Q1779371","display_name":"Order (exchange)","level":2,"score":0.5083469748497009},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4550313949584961},{"id":"https://openalex.org/C16345878","wikidata":"https://www.wikidata.org/wiki/Q107472979","display_name":"Orientation (vector space)","level":2,"score":0.42561665177345276},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.40393534302711487},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.402646005153656},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.38504740595817566},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.36408859491348267},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.34063920378685},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.16563105583190918},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.07478901743888855},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C10138342","wikidata":"https://www.wikidata.org/wiki/Q43015","display_name":"Finance","level":1,"score":0.0}],"mesh":[],"locations_count":8,"locations":[{"id":"doi:10.1186/s13015-019-0156-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13015-019-0156-5","pdf_url":"https://almob.biomedcentral.com/track/pdf/10.1186/s13015-019-0156-5","source":{"id":"https://openalex.org/S205663195","display_name":"Algorithms for Molecular Biology","issn_l":"1748-7188","issn":["1748-7188"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for Molecular Biology","raw_type":"journal-article"},{"id":"pmid:31709002","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31709002","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for molecular biology : AMB","raw_type":null},{"id":"pmh:oai:repositorio.unicamp.br:REPOSIP/337464","is_oa":true,"landing_page_url":"http://repositorio.unicamp.br/jspui/handle/REPOSIP/337464","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"WOS","raw_type":"Artigo de pesquisa"},{"id":"pmh:oai:HAL:hal-02481196v1","is_oa":false,"landing_page_url":"https://hal.science/hal-02481196","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Algorithms for Molecular Biology, 2019, 14 (1), ⟨10.1186/s13015-019-0156-5⟩","raw_type":"Journal articles"},{"id":"pmh:oai:americanae.aecid.es:2850819","is_oa":true,"landing_page_url":"http://americanae.aecid.es/americanae/es/registros/registro.do?tipoRegistro=MTD&idBib=2850819","pdf_url":null,"source":{"id":"https://openalex.org/S4306400786","display_name":"Americanae (AECID Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"WOS","raw_type":"Artigo de pesquisa"},{"id":"pmh:oai:doaj.org/article:15ad0e595ef6452cb7dd98446a000dca","is_oa":false,"landing_page_url":"https://doaj.org/article/15ad0e595ef6452cb7dd98446a000dca","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Algorithms for Molecular Biology, Vol 14, Iss 1, Pp 1-17 (2019)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5803519","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6833170","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:https://www.repositorio.unicamp.br/:1201568","is_oa":true,"landing_page_url":"https://hdl.handle.net/20.500.12733/1657652","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"reponame:Reposit\u00f3rio da Produ\u00e7\u00e3o Cient\u00edfica e Intelectual da Unicamp","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"doi:10.1186/s13015-019-0156-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13015-019-0156-5","pdf_url":"https://almob.biomedcentral.com/track/pdf/10.1186/s13015-019-0156-5","source":{"id":"https://openalex.org/S205663195","display_name":"Algorithms for Molecular Biology","issn_l":"1748-7188","issn":["1748-7188"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for Molecular Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1127590115","display_name":null,"funder_award_id":"2013/08293-7","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"},{"id":"https://openalex.org/G1551459331","display_name":null,"funder_award_id":"400487/2016-0","funder_id":"https://openalex.org/F4320320997","funder_display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo"},{"id":"https://openalex.org/G1888831246","display_name":null,"funder_award_id":"140466/2018-5","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G3914732244","display_name":null,"funder_award_id":"2018-5","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"},{"id":"https://openalex.org/G4402799499","display_name":null,"funder_award_id":"2015/","funder_id":"https://openalex.org/F4320320997","funder_display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo"},{"id":"https://openalex.org/G4990664419","display_name":null,"funder_award_id":"2015/11937-9","funder_id":"https://openalex.org/F4320320997","funder_display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo"},{"id":"https://openalex.org/G590670640","display_name":null,"funder_award_id":"2017/12646-3","funder_id":"https://openalex.org/F4320320997","funder_display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo"},{"id":"https://openalex.org/G6284504855","display_name":null,"funder_award_id":"425340/2016-3","funder_id":"https://openalex.org/F4320320997","funder_display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo"},{"id":"https://openalex.org/G6856732860","display_name":null,"funder_award_id":"2015/11937-9","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"},{"id":"https://openalex.org/G6931905536","display_name":null,"funder_award_id":"425340/2016-3","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G7947704863","display_name":null,"funder_award_id":"2013/08293-7","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G8470170619","display_name":null,"funder_award_id":"831/15","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"},{"id":"https://openalex.org/G8491523703","display_name":null,"funder_award_id":"2017/16246-0","funder_id":"https://openalex.org/F4320320997","funder_display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo"},{"id":"https://openalex.org/G8772606128","display_name":null,"funder_award_id":"2015/11937-9","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G8780876464","display_name":null,"funder_award_id":"400487/2016-0","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G8880512842","display_name":null,"funder_award_id":"CAPES/COFECUB 831/15","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"},{"id":"https://openalex.org/G8974603849","display_name":null,"funder_award_id":"2013/08293-7","funder_id":"https://openalex.org/F4320320997","funder_display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo"}],"funders":[{"id":"https://openalex.org/F4320320997","display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo","ror":"https://ror.org/02ddkpn78"},{"id":"https://openalex.org/F4320321091","display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior","ror":"https://ror.org/00x0ma614"},{"id":"https://openalex.org/F4320322025","display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico","ror":"https://ror.org/03swz6y49"},{"id":"https://openalex.org/F4320337368","display_name":"Division of Graduate Education","ror":"https://ror.org/00whkrf32"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2985875441.pdf","grobid_xml":"https://content.openalex.org/works/W2985875441.grobid-xml"},"referenced_works_count":22,"referenced_works":["https://openalex.org/W74509308","https://openalex.org/W1511821224","https://openalex.org/W1530821781","https://openalex.org/W1574901592","https://openalex.org/W1966872307","https://openalex.org/W1968192648","https://openalex.org/W1971322036","https://openalex.org/W2023749136","https://openalex.org/W2054600183","https://openalex.org/W2082505684","https://openalex.org/W2103333868","https://openalex.org/W2107383419","https://openalex.org/W2108998942","https://openalex.org/W2130849966","https://openalex.org/W2149628296","https://openalex.org/W2326587081","https://openalex.org/W2367820173","https://openalex.org/W2410986655","https://openalex.org/W2501571505","https://openalex.org/W2552354420","https://openalex.org/W2622515803","https://openalex.org/W3198160809"],"related_works":["https://openalex.org/W1987704141","https://openalex.org/W2937595795","https://openalex.org/W2784001400","https://openalex.org/W3151497773","https://openalex.org/W2030987331","https://openalex.org/W2770227227","https://openalex.org/W4281491736","https://openalex.org/W2571285940","https://openalex.org/W2108267719","https://openalex.org/W2952365809"],"abstract_inverted_index":{"Abstract":[0],"Background":[1],"The":[2,155],"evolutionary":[3],"distance":[4,142],"between":[5,123,143],"two":[6,144,183],"genomes":[7],"can":[8,77],"be":[9],"estimated":[10],"by":[11,188],"computing":[12,140],"a":[13,30,81,88,91,99,244],"minimum":[14],"length":[15,96],"sequence":[16,37],"of":[17,38,42,84,104,119,121,139,165,204,247],"operations,":[18],"called":[19,125,169],"genome":[20,26,31,47,62,156],"rearrangements":[21,63,73],",":[22],"that":[23,87,232],"transform":[24],"one":[25],"into":[27,55,147],"another.":[28],"Usually,":[29],"is":[32,207],"modeled":[33],"as":[34,116],"an":[35],"ordered":[36],"genes,":[39,124],"and":[40,130,152,167,174,217,261],"most":[41,80],"the":[43,46,66,105,117,137,141,202,205,222,240,250],"studies":[44],"in":[45,51],"rearrangement":[48,76,89,157],"literature":[49],"consist":[50],"shaping":[52],"biological":[53],"scenarios":[54],"mathematical":[56],"models.":[57],"For":[58],"instance,":[59],"allowing":[60],"different":[61],"operations":[64,158,191],"at":[65,79],"same":[67],"time,":[68],"adding":[69],"constraints":[70],"to":[71,182,256,264],"these":[72,233],"(e.g.,":[74],"each":[75],"affect":[78,180],"given":[82],"number":[83,246],"genes),":[85],"considering":[86,221],"implies":[90],"cost":[92],"depending":[93],"on":[94],"its":[95],"rather":[97],"than":[98],"unit":[100],"cost,":[101],"etc.":[102],"Most":[103],"works,":[106],"however,":[107],"have":[108],"overlooked":[109],"some":[110],"important":[111],"features":[112],"inside":[113],"genomes,":[114,145],"such":[115],"presence":[118],"sequences":[120],"nucleotides":[122],"intergenic":[126,153],"regions":[127],".":[128],"Results":[129],"conclusions":[131],"In":[132],"this":[133],"work,":[134],"we":[135,159,211],"investigate":[136],"problem":[138],"taking":[146],"account":[148],"both":[149],"gene":[150],"order":[151],"sizes.":[154],"consider":[160],"here":[161],"are":[162],"constrained":[163],"types":[164],"reversals":[166,172],"transpositions,":[168],"super":[170,175,189],"short":[171,176,190],"(SSRs)":[173],"transpositions":[177],"(SSTs),":[178],"which":[179],"up":[181],"(consecutive)":[184],"genes.":[185],"We":[186,197,229],"denote":[187],"(SSOs)":[192],"any":[193],"SSR":[194],"or":[195,215,227,259,267],"SST.":[196],"show":[198,231],"3-approximation":[199],"algorithms":[200,219,234],"when":[201,210,220,239],"orientation":[203,223],"genes":[206],"not":[208],"considered":[209],"allow":[212],"SSRs,":[213],"SSTs,":[214],"SSOs,":[216],"5-approximation":[218],"for":[224],"either":[225,257,265],"SSRs":[226],"SSOs.":[228],"also":[230],"improve":[235],"their":[236],"approximation":[237,251],"factors":[238],"input":[241],"permutation":[242],"has":[243],"higher":[245],"inversions,":[248],"where":[249],"factor":[252],"decreases":[253],"from":[254,262],"3":[255,266],"2":[258],"1.5,":[260],"5":[263],"2.":[268]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":2}],"updated_date":"2026-06-19T17:40:00.097472","created_date":"2025-10-10T00:00:00"}