{"id":"https://openalex.org/W2804502305","doi":"https://doi.org/10.1186/s13015-019-0140-0","title":"External memory BWT and LCP computation for sequence collections with applications","display_name":"External memory BWT and LCP computation for sequence collections with applications","publication_year":2019,"publication_date":"2019-03-08","ids":{"openalex":"https://openalex.org/W2804502305","doi":"https://doi.org/10.1186/s13015-019-0140-0","mag":"2804502305","pmid":"https://pubmed.ncbi.nlm.nih.gov/30899322"},"language":"en","primary_location":{"id":"doi:10.1186/s13015-019-0140-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13015-019-0140-0","pdf_url":"https://almob.biomedcentral.com/track/pdf/10.1186/s13015-019-0140-0","source":{"id":"https://openalex.org/S205663195","display_name":"Algorithms for Molecular Biology","issn_l":"1748-7188","issn":["1748-7188"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for Molecular Biology","raw_type":"journal-article"},"type":"preprint","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://almob.biomedcentral.com/track/pdf/10.1186/s13015-019-0140-0","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5025452388","display_name":"Lavinia Egidi","orcid":"https://orcid.org/0000-0002-9745-0942"},"institutions":[{"id":"https://openalex.org/I123338534","display_name":"Universit\u00e0 degli Studi del Piemonte Orientale \u201cAmedeo Avogadro\u201d","ror":"https://ror.org/04387x656","country_code":"IT","type":"education","lineage":["https://openalex.org/I123338534"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Lavinia Egidi","raw_affiliation_strings":["1DiSIT, University of Eastern Piedmont, Viale Michel, 11, 15121 Alessandria, Italy","DiSIT, University of Eastern Piedmont, Alessandria, Italy"],"affiliations":[{"raw_affiliation_string":"1DiSIT, University of Eastern Piedmont, Viale Michel, 11, 15121 Alessandria, Italy","institution_ids":[]},{"raw_affiliation_string":"DiSIT, University of Eastern Piedmont, Alessandria, Italy","institution_ids":["https://openalex.org/I123338534"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016168980","display_name":"Felipe A. Louza","orcid":"https://orcid.org/0000-0003-2931-1470"},"institutions":[{"id":"https://openalex.org/I17974374","display_name":"Universidade de S\u00e3o Paulo","ror":"https://ror.org/036rp1748","country_code":"BR","type":"education","lineage":["https://openalex.org/I17974374"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Felipe A. Louza","raw_affiliation_strings":["2Department of Computing and Mathematics, University of S\u00e3o Paulo, Av. Bandeirantes, 3900, 14040-901 Ribeir\u00e3o Preto, Brazil","Department of Computing and Mathematics, University of S\u00e3o Paulo, Ribeir\u00e3o Preto, Brazil"],"affiliations":[{"raw_affiliation_string":"2Department of Computing and Mathematics, University of S\u00e3o Paulo, Av. Bandeirantes, 3900, 14040-901 Ribeir\u00e3o Preto, Brazil","institution_ids":[]},{"raw_affiliation_string":"Department of Computing and Mathematics, University of S\u00e3o Paulo, Ribeir\u00e3o Preto, Brazil","institution_ids":["https://openalex.org/I17974374"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049381844","display_name":"Giovanni Manzini","orcid":"https://orcid.org/0000-0002-5047-0196"},"institutions":[{"id":"https://openalex.org/I123338534","display_name":"Universit\u00e0 degli Studi del Piemonte Orientale \u201cAmedeo Avogadro\u201d","ror":"https://ror.org/04387x656","country_code":"IT","type":"education","lineage":["https://openalex.org/I123338534"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Giovanni Manzini","raw_affiliation_strings":["1DiSIT, University of Eastern Piedmont, Viale Michel, 11, 15121 Alessandria, Italy","3IIT CNR, Via Moruzzi, 1, 56124 Pisa, Italy","DiSIT, University of Eastern Piedmont, Alessandria, Italy"],"affiliations":[{"raw_affiliation_string":"1DiSIT, University of Eastern Piedmont, Viale Michel, 11, 15121 Alessandria, Italy","institution_ids":[]},{"raw_affiliation_string":"3IIT CNR, Via Moruzzi, 1, 56124 Pisa, Italy","institution_ids":[]},{"raw_affiliation_string":"DiSIT, University of Eastern Piedmont, Alessandria, Italy","institution_ids":["https://openalex.org/I123338534"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5034874196","display_name":"Guilherme P. Telles","orcid":"https://orcid.org/0000-0003-2608-4807"},"institutions":[{"id":"https://openalex.org/I181391015","display_name":"Universidade Estadual de Campinas (UNICAMP)","ror":"https://ror.org/04wffgt70","country_code":"BR","type":"education","lineage":["https://openalex.org/I181391015"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Guilherme P. Telles","raw_affiliation_strings":["4Institute of Computing, University of Campinas, Av. Albert Einstein, 1251, 13083-852 Campinas, Brazil","Institute of Computing - University of Campinas, Campinas, Brazil"],"affiliations":[{"raw_affiliation_string":"4Institute of Computing, University of Campinas, Av. Albert Einstein, 1251, 13083-852 Campinas, Brazil","institution_ids":[]},{"raw_affiliation_string":"Institute of Computing - University of Campinas, Campinas, Brazil","institution_ids":["https://openalex.org/I181391015"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5025452388"],"corresponding_institution_ids":["https://openalex.org/I123338534"],"apc_list":{"value":1490,"currency":"GBP","value_usd":1827},"apc_paid":{"value":1490,"currency":"GBP","value_usd":1827},"fwci":0.1447,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.54536188,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"14","issue":"1","first_page":"6","last_page":"6"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9785000085830688,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/de-bruijn-sequence","display_name":"De Bruijn sequence","score":0.7277130484580994},{"id":"https://openalex.org/keywords/prefix","display_name":"Prefix","score":0.715743899345398},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6736549735069275},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.642421305179596},{"id":"https://openalex.org/keywords/auxiliary-memory","display_name":"Auxiliary memory","score":0.6277245879173279},{"id":"https://openalex.org/keywords/suffix-array","display_name":"Suffix array","score":0.6225675344467163},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.6039580702781677},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5913534164428711},{"id":"https://openalex.org/keywords/suffix","display_name":"Suffix","score":0.5832114815711975},{"id":"https://openalex.org/keywords/out-of-core-algorithm","display_name":"Out-of-core algorithm","score":0.5583013296127319},{"id":"https://openalex.org/keywords/compressed-suffix-array","display_name":"Compressed suffix array","score":0.4913891851902008},{"id":"https://openalex.org/keywords/simple","display_name":"Simple (philosophy)","score":0.48321616649627686},{"id":"https://openalex.org/keywords/generalized-suffix-tree","display_name":"Generalized suffix tree","score":0.4597416818141937},{"id":"https://openalex.org/keywords/suffix-tree","display_name":"Suffix tree","score":0.4496496319770813},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.41529619693756104},{"id":"https://openalex.org/keywords/data-structure","display_name":"Data structure","score":0.3743760585784912},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.24847277998924255},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.18798309564590454}],"concepts":[{"id":"https://openalex.org/C170320093","wikidata":"https://www.wikidata.org/wiki/Q1953457","display_name":"De Bruijn sequence","level":2,"score":0.7277130484580994},{"id":"https://openalex.org/C141603448","wikidata":"https://www.wikidata.org/wiki/Q134830","display_name":"Prefix","level":2,"score":0.715743899345398},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6736549735069275},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.642421305179596},{"id":"https://openalex.org/C82687282","wikidata":"https://www.wikidata.org/wiki/Q66221","display_name":"Auxiliary memory","level":2,"score":0.6277245879173279},{"id":"https://openalex.org/C2779259728","wikidata":"https://www.wikidata.org/wiki/Q281472","display_name":"Suffix array","level":3,"score":0.6225675344467163},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.6039580702781677},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5913534164428711},{"id":"https://openalex.org/C2779804580","wikidata":"https://www.wikidata.org/wiki/Q102047","display_name":"Suffix","level":2,"score":0.5832114815711975},{"id":"https://openalex.org/C79470037","wikidata":"https://www.wikidata.org/wiki/Q279748","display_name":"Out-of-core algorithm","level":2,"score":0.5583013296127319},{"id":"https://openalex.org/C100903775","wikidata":"https://www.wikidata.org/wiki/Q5157028","display_name":"Compressed suffix array","level":4,"score":0.4913891851902008},{"id":"https://openalex.org/C2780586882","wikidata":"https://www.wikidata.org/wiki/Q7520643","display_name":"Simple (philosophy)","level":2,"score":0.48321616649627686},{"id":"https://openalex.org/C118146561","wikidata":"https://www.wikidata.org/wiki/Q5532514","display_name":"Generalized suffix tree","level":4,"score":0.4597416818141937},{"id":"https://openalex.org/C2781166958","wikidata":"https://www.wikidata.org/wiki/Q1426863","display_name":"Suffix tree","level":3,"score":0.4496496319770813},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.41529619693756104},{"id":"https://openalex.org/C162319229","wikidata":"https://www.wikidata.org/wiki/Q175263","display_name":"Data structure","level":2,"score":0.3743760585784912},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.24847277998924255},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.18798309564590454},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C9390403","wikidata":"https://www.wikidata.org/wiki/Q3966","display_name":"Computer hardware","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[],"locations_count":13,"locations":[{"id":"doi:10.1186/s13015-019-0140-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13015-019-0140-0","pdf_url":"https://almob.biomedcentral.com/track/pdf/10.1186/s13015-019-0140-0","source":{"id":"https://openalex.org/S205663195","display_name":"Algorithms for Molecular Biology","issn_l":"1748-7188","issn":["1748-7188"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for Molecular Biology","raw_type":"journal-article"},{"id":"pmid:30899322","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30899322","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for molecular biology : AMB","raw_type":null},{"id":"mag:2804502305","is_oa":true,"landing_page_url":"https://arxiv.org/pdf/1805.06821v1","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"arXiv (Cornell University)","raw_type":null},{"id":"pmh:oai:arpi.unipi.it:11568/1097613","is_oa":false,"landing_page_url":"http://hdl.handle.net/11568/1097613","pdf_url":null,"source":{"id":"https://openalex.org/S4377196265","display_name":"CINECA IRIS Institutial research information system (University of Pisa)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I108290504","host_organization_name":"University of Pisa","host_organization_lineage":["https://openalex.org/I108290504"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/conferenceObject"},{"id":"pmh:oai:doaj.org/article:2ec00b4a05644bf9af467fff8f8b094a","is_oa":true,"landing_page_url":"https://doaj.org/article/2ec00b4a05644bf9af467fff8f8b094a","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Algorithms for Molecular Biology, Vol 14, Iss 1, Pp 1-15 (2019)","raw_type":"article"},{"id":"pmh:oai:drops-oai.dagstuhl.de:9312","is_oa":true,"landing_page_url":"https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2018.10","pdf_url":null,"source":{"id":"https://openalex.org/S4377196569","display_name":"DROPS (Schloss Dagstuhl \u2013 Leibniz Center for Informatics)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2799853480","host_organization_name":"Schloss Dagstuhl \u2013 Leibniz Center for Informatics","host_organization_lineage":["https://openalex.org/I2799853480"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"InProceedings"},{"id":"pmh:oai:europepmc.org:5410064","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC6408864","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:6408864","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6408864","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Algorithms Mol Biol","raw_type":"Text"},{"id":"doi:10.48550/arxiv.1805.06821","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.1805.06821","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"},{"id":"doi:10.4230/lipics.wabi.2018.10","is_oa":true,"landing_page_url":"https://doi.org/10.4230/lipics.wabi.2018.10","pdf_url":null,"source":{"id":"https://openalex.org/S7407052059","display_name":"Dagstuhl Research Online Publication Server","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":""},{"id":"doi:10.60692/f78tz-fjw16","is_oa":true,"landing_page_url":"https://doi.org/10.60692/f78tz-fjw16","pdf_url":null,"source":{"id":"https://openalex.org/S7407051682","display_name":"Greater South Information System","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"},{"id":"doi:10.60692/fkcnp-7jv46","is_oa":true,"landing_page_url":"https://doi.org/10.60692/fkcnp-7jv46","pdf_url":null,"source":{"id":"https://openalex.org/S7407051682","display_name":"Greater South Information System","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"},{"id":"mag:3098252074","is_oa":false,"landing_page_url":"https://dblp.uni-trier.de/db/journals/corr/corr1805.html#abs-1805-06821","pdf_url":null,"source":{"id":"https://openalex.org/S4306421221","display_name":"Workshop on Algorithms in Bioinformatics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":"Workshop on Algorithms in Bioinformatics","raw_type":null}],"best_oa_location":{"id":"doi:10.1186/s13015-019-0140-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13015-019-0140-0","pdf_url":"https://almob.biomedcentral.com/track/pdf/10.1186/s13015-019-0140-0","source":{"id":"https://openalex.org/S205663195","display_name":"Algorithms for Molecular Biology","issn_l":"1748-7188","issn":["1748-7188"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for Molecular Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G120275728","display_name":null,"funder_award_id":"Univer","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G1429890386","display_name":null,"funder_award_id":"(CNPq","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G1950316668","display_name":null,"funder_award_id":"CAPES","funder_id":"https://openalex.org/F4320320997","funder_display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo"},{"id":"https://openalex.org/G237172224","display_name":null,"funder_award_id":"-0 and","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G2458068849","display_name":null,"funder_award_id":"GNCS Project 2019","funder_id":"https://openalex.org/F4320311030","funder_display_name":"Istituto Nazionale di Alta Matematica \"Francesco Severi\""},{"id":"https://openalex.org/G2483913576","display_name":null,"funder_award_id":"Grants","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G3331681876","display_name":null,"funder_award_id":"CAPES","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G3601516360","display_name":null,"funder_award_id":"Brazil","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G3938906640","display_name":null,"funder_award_id":"(CAPES)","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"},{"id":"https://openalex.org/G4600047395","display_name":null,"funder_award_id":"FAPESP","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"},{"id":"https://openalex.org/G5079005330","display_name":null,"funder_award_id":"support","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G5139334624","display_name":null,"funder_award_id":"Coordena\u00e7\u00e3o","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"},{"id":"https://openalex.org/G6160365333","display_name":null,"funder_award_id":"Grant","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"},{"id":"https://openalex.org/G692611148","display_name":null,"funder_award_id":"Brazil","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"},{"id":"https://openalex.org/G7295187585","display_name":null,"funder_award_id":"Grant","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G750955827","display_name":null,"funder_award_id":"2018/21509-2","funder_id":"https://openalex.org/F4320320997","funder_display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo"},{"id":"https://openalex.org/G8205569258","display_name":null,"funder_award_id":"2017/09105-0","funder_id":"https://openalex.org/F4320320997","funder_display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo"},{"id":"https://openalex.org/G963174003","display_name":null,"funder_award_id":"de Aperfei\u00e7","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"}],"funders":[{"id":"https://openalex.org/F4320311030","display_name":"Istituto Nazionale di Alta Matematica \"Francesco Severi\"","ror":"https://ror.org/01vx64p53"},{"id":"https://openalex.org/F4320320997","display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo","ror":"https://ror.org/02ddkpn78"},{"id":"https://openalex.org/F4320321091","display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior","ror":"https://ror.org/00x0ma614"},{"id":"https://openalex.org/F4320322025","display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico","ror":"https://ror.org/03swz6y49"},{"id":"https://openalex.org/F4320323374","display_name":"Universit\u00e0 degli Studi del Piemonte Orientale","ror":"https://ror.org/04387x656"},{"id":"https://openalex.org/F4320334079","display_name":"Gruppo Nazionale per il Calcolo Scientifico","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2804502305.pdf","grobid_xml":"https://content.openalex.org/works/W2804502305.grobid-xml"},"referenced_works_count":39,"referenced_works":["https://openalex.org/W6247929","https://openalex.org/W66725514","https://openalex.org/W149739310","https://openalex.org/W938539187","https://openalex.org/W1573352354","https://openalex.org/W1822485921","https://openalex.org/W1977174119","https://openalex.org/W1987760161","https://openalex.org/W1988110322","https://openalex.org/W2007736033","https://openalex.org/W2011699809","https://openalex.org/W2046441184","https://openalex.org/W2048491355","https://openalex.org/W2051304374","https://openalex.org/W2051511420","https://openalex.org/W2063556310","https://openalex.org/W2088386938","https://openalex.org/W2095356161","https://openalex.org/W2111989602","https://openalex.org/W2117666586","https://openalex.org/W2158874082","https://openalex.org/W2161488606","https://openalex.org/W2169708967","https://openalex.org/W2312729946","https://openalex.org/W2339316959","https://openalex.org/W2345086198","https://openalex.org/W2402980768","https://openalex.org/W2406547600","https://openalex.org/W2514119406","https://openalex.org/W2604363154","https://openalex.org/W2619212644","https://openalex.org/W2753495445","https://openalex.org/W2774498188","https://openalex.org/W2784788330","https://openalex.org/W2883535187","https://openalex.org/W2891200220","https://openalex.org/W2952379095","https://openalex.org/W2963599524","https://openalex.org/W4246116521"],"related_works":["https://openalex.org/W3098252074","https://openalex.org/W2619212644","https://openalex.org/W2485439294","https://openalex.org/W2167406488","https://openalex.org/W2774498188","https://openalex.org/W2523562247","https://openalex.org/W2732093072","https://openalex.org/W2738126475","https://openalex.org/W3010768629","https://openalex.org/W2287432258","https://openalex.org/W2736180370","https://openalex.org/W2883535187","https://openalex.org/W2345086198","https://openalex.org/W1766660969","https://openalex.org/W3083952363","https://openalex.org/W1525445671","https://openalex.org/W2604604482","https://openalex.org/W1985704385","https://openalex.org/W2907017168","https://openalex.org/W1537874958"],"abstract_inverted_index":{"We":[0],"prove":[1],"that":[2,37],"our":[3,38],"algorithm":[4,39],"performs":[5],"<mml:math":[6,26],"xmlns:mml=\"http://www.w3.org/1998/Math/MathML\"><mml:mrow><mml:mi>O</mml:mi>":[7],"<mml:mo>(</mml:mo>":[8],"<mml:mi>n</mml:mi>":[9],"<mml:mspace></mml:mspace>":[10],"<mml:mi>maxlcp</mml:mi>":[11],"<mml:mo>)</mml:mo></mml:mrow>":[12],"</mml:math>":[13],"sequential":[14],"I/Os,":[15],"where":[16],"<i>n</i>":[17],"is":[18,28,40,55,69],"the":[19,23,29,45,48,66,74,77],"total":[20],"length":[21],"of":[22,47,76],"collection":[24],"and":[25],"xmlns:mml=\"http://www.w3.org/1998/Math/MathML\"><mml:mi>maxlcp</mml:mi></mml:math>":[27],"maximum":[30],"LCP":[31],"value.":[32],"The":[33],"experimental":[34],"results":[35],"show":[36],"only":[41],"slightly":[42],"slower":[43],"than":[44],"state":[46],"art":[49],"for":[50,61],"short":[51],"sequences":[52,63],"but":[53],"it":[54],"up":[56],"to":[57,73],"40":[58],"times":[59],"faster":[60],"longer":[62],"or":[64],"when":[65],"available":[67],"RAM":[68],"at":[70],"least":[71],"equal":[72],"size":[75],"input.":[78]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
