{"id":"https://openalex.org/W2940808208","doi":"https://doi.org/10.1186/s13015-019-0139-6","title":"Reconciling multiple genes trees via segmental duplications and losses","display_name":"Reconciling multiple genes trees via segmental duplications and losses","publication_year":2019,"publication_date":"2019-03-20","ids":{"openalex":"https://openalex.org/W2940808208","doi":"https://doi.org/10.1186/s13015-019-0139-6","mag":"2940808208","pmid":"https://pubmed.ncbi.nlm.nih.gov/30930955"},"language":"en","primary_location":{"id":"doi:10.1186/s13015-019-0139-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13015-019-0139-6","pdf_url":"https://almob.biomedcentral.com/track/pdf/10.1186/s13015-019-0139-6","source":{"id":"https://openalex.org/S205663195","display_name":"Algorithms for Molecular Biology","issn_l":"1748-7188","issn":["1748-7188"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for Molecular Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://almob.biomedcentral.com/track/pdf/10.1186/s13015-019-0139-6","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5110357719","display_name":"Riccardo Dondi","orcid":null},"institutions":[{"id":"https://openalex.org/I11039511","display_name":"University of Bergamo","ror":"https://ror.org/02mbd5571","country_code":"IT","type":"education","lineage":["https://openalex.org/I11039511"]},{"id":"https://openalex.org/I4210123315","display_name":"Ministero della cultura","ror":"https://ror.org/035qedt02","country_code":"IT","type":"funder","lineage":["https://openalex.org/I4210104593","https://openalex.org/I4210123315"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Riccardo Dondi","raw_affiliation_strings":["1Dipartimento di Filosofia, Lettere, Comunicazione, Universit\u00e0 degli Studi di Bergamo, Bergamo, Italy","Dipartimento di Scienze dei Linguaggi, della Comunicazione e degli Studi Culturali (Italy)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1Dipartimento di Filosofia, Lettere, Comunicazione, Universit\u00e0 degli Studi di Bergamo, Bergamo, Italy","institution_ids":["https://openalex.org/I11039511"]},{"raw_affiliation_string":"Dipartimento di Scienze dei Linguaggi, della Comunicazione e degli Studi Culturali (Italy)","institution_ids":["https://openalex.org/I4210123315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016796629","display_name":"Manuel Lafond","orcid":"https://orcid.org/0000-0002-5305-7372"},"institutions":[{"id":"https://openalex.org/I135117807","display_name":"Universit\u00e9 de Sherbrooke","ror":"https://ror.org/00kybxq39","country_code":"CA","type":"education","lineage":["https://openalex.org/I135117807"]},{"id":"https://openalex.org/I4210111842","display_name":"Computer Research Institute of Montr\u00e9al","ror":"https://ror.org/0279d5115","country_code":"CA","type":"nonprofit","lineage":["https://openalex.org/I4210111842"]},{"id":"https://openalex.org/I70931966","display_name":"Universit\u00e9 de Montr\u00e9al","ror":"https://ror.org/0161xgx34","country_code":"CA","type":"education","lineage":["https://openalex.org/I70931966"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Manuel Lafond","raw_affiliation_strings":["2Department of Computer Science, Universit\u00e8 de Sherbrooke, Sherbrooke, Canada","DIRO - D\u00e9partement d'Informatique et de Recherche Op\u00e9rationnelle [Montreal] (D\u00e9partement d'Informatique et de recherche op\u00e9rationnelle Universit\u00e9 de Montr\u00e9al Pavillon Andr\u00e9-Aisenstadt CP 6128 succ Centre-Ville Montr\u00e9al QC H3C 3J7 Canada - Canada)"],"raw_orcid":"https://orcid.org/0000-0002-5305-7372","affiliations":[{"raw_affiliation_string":"2Department of Computer Science, Universit\u00e8 de Sherbrooke, Sherbrooke, Canada","institution_ids":["https://openalex.org/I135117807"]},{"raw_affiliation_string":"DIRO - D\u00e9partement d'Informatique et de Recherche Op\u00e9rationnelle [Montreal] (D\u00e9partement d'Informatique et de recherche op\u00e9rationnelle Universit\u00e9 de Montr\u00e9al Pavillon Andr\u00e9-Aisenstadt CP 6128 succ Centre-Ville Montr\u00e9al QC H3C 3J7 Canada - Canada)","institution_ids":["https://openalex.org/I4210111842","https://openalex.org/I70931966"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5057284934","display_name":"C\u00e9line Scornavacca","orcid":"https://orcid.org/0009-0004-0179-9771"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I159885104","display_name":"\u00c9cole Pratique des Hautes \u00c9tudes","ror":"https://ror.org/046b3cj80","country_code":"FR","type":"education","lineage":["https://openalex.org/I159885104","https://openalex.org/I2746051580"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I4210105943","display_name":"Institut des Sciences de l'Evolution de Montpellier","ror":"https://ror.org/01cah1n37","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I131077856","https://openalex.org/I1327553481","https://openalex.org/I154202486","https://openalex.org/I159885104","https://openalex.org/I19894307","https://openalex.org/I2746051580","https://openalex.org/I2799535048","https://openalex.org/I2802818602","https://openalex.org/I4210088668","https://openalex.org/I4210090127","https://openalex.org/I4210105943","https://openalex.org/I4210107625","https://openalex.org/I4210113730","https://openalex.org/I4210131494","https://openalex.org/I4210166444","https://openalex.org/I4405257220"]},{"id":"https://openalex.org/I4210166444","display_name":"Institut de Recherche pour le D\u00e9veloppement","ror":"https://ror.org/05q3vnk25","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1327553481","https://openalex.org/I154202486","https://openalex.org/I2799535048","https://openalex.org/I2802818602","https://openalex.org/I4210088668","https://openalex.org/I4210090127","https://openalex.org/I4210113730","https://openalex.org/I4210131494","https://openalex.org/I4210166444","https://openalex.org/I4405257220"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Celine Scornavacca","raw_affiliation_strings":["3ISEM, CNRS, IRD, EPHE, Universit de Montpellier, Montpellier, France","UMR ISEM - Institut des Sciences de l'Evolution de Montpellier (Place E. Bataillon CC 064 34095 Montpellier Cedex 05 - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"3ISEM, CNRS, IRD, EPHE, Universit de Montpellier, Montpellier, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I159885104","https://openalex.org/I19894307","https://openalex.org/I4210166444"]},{"raw_affiliation_string":"UMR ISEM - Institut des Sciences de l'Evolution de Montpellier (Place E. Bataillon CC 064 34095 Montpellier Cedex 05 - France)","institution_ids":["https://openalex.org/I4210105943"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5016796629"],"corresponding_institution_ids":["https://openalex.org/I135117807","https://openalex.org/I4210111842","https://openalex.org/I70931966"],"apc_list":{"value":2290,"currency":"USD","value_usd":2290},"apc_paid":{"value":2290,"currency":"USD","value_usd":2290},"fwci":0.9103,"has_fulltext":true,"cited_by_count":22,"citation_normalized_percentile":{"value":0.72632961,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"14","issue":"1","first_page":"7","last_page":"7"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.9843000173568726,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10497","display_name":"Fungal and yeast genetics research","score":0.9747999906539917,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gene-duplication","display_name":"Gene duplication","score":0.7941000461578369},{"id":"https://openalex.org/keywords/segmental-duplication","display_name":"Segmental duplication","score":0.710075318813324},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.7051725387573242},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6277299523353577},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.6237705945968628},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.6183555722236633},{"id":"https://openalex.org/keywords/time-complexity","display_name":"Time complexity","score":0.5376232266426086},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5282952785491943},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4281002879142761},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4036444425582886},{"id":"https://openalex.org/keywords/gene-family","display_name":"Gene family","score":0.36276042461395264},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3363943099975586},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2756578326225281},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2663939893245697},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.24404862523078918}],"concepts":[{"id":"https://openalex.org/C7602840","wikidata":"https://www.wikidata.org/wiki/Q746284","display_name":"Gene duplication","level":3,"score":0.7941000461578369},{"id":"https://openalex.org/C57808653","wikidata":"https://www.wikidata.org/wiki/Q7446270","display_name":"Segmental duplication","level":5,"score":0.710075318813324},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.7051725387573242},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6277299523353577},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6237705945968628},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.6183555722236633},{"id":"https://openalex.org/C311688","wikidata":"https://www.wikidata.org/wiki/Q2393193","display_name":"Time complexity","level":2,"score":0.5376232266426086},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5282952785491943},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4281002879142761},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4036444425582886},{"id":"https://openalex.org/C5911399","wikidata":"https://www.wikidata.org/wiki/Q2278983","display_name":"Gene family","level":4,"score":0.36276042461395264},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3363943099975586},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2756578326225281},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2663939893245697},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.24404862523078918},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":6,"locations":[{"id":"doi:10.1186/s13015-019-0139-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13015-019-0139-6","pdf_url":"https://almob.biomedcentral.com/track/pdf/10.1186/s13015-019-0139-6","source":{"id":"https://openalex.org/S205663195","display_name":"Algorithms for Molecular Biology","issn_l":"1748-7188","issn":["1748-7188"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for Molecular Biology","raw_type":"journal-article"},{"id":"pmid:30930955","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30930955","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for molecular biology : AMB","raw_type":null},{"id":"pmh:oai:HAL:hal-02154306v1","is_oa":false,"landing_page_url":"https://hal.science/hal-02154306","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Algorithms for Molecular Biology, 2019, 14 (1), &#x27E8;10.1186/s13015-019-0139-6&#x27E9;","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:aisberg.unibg.it:10446/150285","is_oa":true,"landing_page_url":"http://hdl.handle.net/10446/150285","pdf_url":null,"source":{"id":"https://openalex.org/S4377196347","display_name":"Aisberg (University of Bergamo)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I11039511","host_organization_name":"University of Bergamo","host_organization_lineage":["https://openalex.org/I11039511"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:31a08a5b3c734f34827359d93878babb","is_oa":false,"landing_page_url":"https://doaj.org/article/31a08a5b3c734f34827359d93878babb","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Algorithms for Molecular Biology, Vol 14, Iss 1, Pp 1-19 (2019)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5418960","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6425616","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13015-019-0139-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13015-019-0139-6","pdf_url":"https://almob.biomedcentral.com/track/pdf/10.1186/s13015-019-0139-6","source":{"id":"https://openalex.org/S205663195","display_name":"Algorithms for Molecular Biology","issn_l":"1748-7188","issn":["1748-7188"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for Molecular Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321487","display_name":"Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2940808208.pdf","grobid_xml":"https://content.openalex.org/works/W2940808208.grobid-xml"},"referenced_works_count":30,"referenced_works":["https://openalex.org/W1538981962","https://openalex.org/W1576387209","https://openalex.org/W1774207464","https://openalex.org/W1991217882","https://openalex.org/W2032299129","https://openalex.org/W2046039468","https://openalex.org/W2047479519","https://openalex.org/W2081933515","https://openalex.org/W2105669285","https://openalex.org/W2135281627","https://openalex.org/W2138113680","https://openalex.org/W2140737953","https://openalex.org/W2145608399","https://openalex.org/W2147496016","https://openalex.org/W2148231054","https://openalex.org/W2159892619","https://openalex.org/W2169540909","https://openalex.org/W2260377084","https://openalex.org/W2260729165","https://openalex.org/W2287141830","https://openalex.org/W2339182468","https://openalex.org/W2592818772","https://openalex.org/W2607298947","https://openalex.org/W2607495137","https://openalex.org/W2618312940","https://openalex.org/W2795174838","https://openalex.org/W2796130155","https://openalex.org/W2890159479","https://openalex.org/W2890613572","https://openalex.org/W2950514289"],"related_works":["https://openalex.org/W1971369643","https://openalex.org/W2152231790","https://openalex.org/W4328050637","https://openalex.org/W887051207","https://openalex.org/W2052299339","https://openalex.org/W2135224090","https://openalex.org/W4280645807","https://openalex.org/W1914610732","https://openalex.org/W1970221653","https://openalex.org/W4236246458"],"abstract_inverted_index":{"Reconciling":[0],"gene":[1,16,23,34,51,112],"trees":[2,52],"with":[3,53,70],"a":[4,8,43,48,54,110,117,134,203],"species":[5,55],"tree":[6,24,56,113],"is":[7,28,36,84,102,114],"fundamental":[9],"problem":[10,83,101,121],"to":[11,46,193],"understand":[12],"the":[13,31,82,100,123,129,138,141,148,173],"evolution":[14,32],"of":[15,33,50,125,151,154,175,205],"families.":[17],"Many":[18],"existing":[19],"approaches":[20],"reconcile":[21,47],"each":[22],"independently.":[25],"However,":[26],"it":[27],"well-known":[29],"that":[30,81,187],"families":[35],"interconnected.":[37],"In":[38],"this":[39,176],"paper,":[40],"we":[41,132,171,184,211],"extend":[42],"previous":[44],"approach":[45],"set":[49,204],"based":[57],"on":[58,122,178,198,202],"segmental":[59,63,152,200],"macro-evolutionary":[60],"events,":[61],"where":[62,140],"duplication":[64],"events":[65],"and":[66,74,109,147],"losses":[67],"are":[68,143],"associated":[69],"cost":[71],"$$\\delta":[72,88,96,144],"$$":[73,76,91,99,146],"$$\\lambda":[75,106],",":[77],"respectively.":[78],"We":[79],"show":[80,186,209],"polynomial-time":[85],"solvable":[86],"when":[87,105],"\\le":[89],"\\lambda":[90,98],"(via":[92],"LCA-mapping),":[93],"while":[94],"if":[95],">":[97],"NP-hard,":[103],"even":[104],"=":[107],"0$$":[108],"single":[111],"given,":[115],"solving":[116],"long":[118],"standing":[119],"open":[120],"complexity":[124,156],"multi-gene":[126],"reconciliation.":[127],"On":[128],"positive":[130],"side,":[131],"give":[133],"fixed-parameter":[135],"algorithm":[136,177],"for":[137],"problem,":[139],"parameters":[142],"/\\lambda":[145],"number":[149],"d":[150],"duplications,":[153],"time":[155],"$$O\\left(\\lceil":[157],"\\frac{\\delta":[158,166],"}{\\lambda":[159,167],"}":[160],"\\rceil":[161],"^{d}":[162],"\\cdot":[163,165],"n":[164],"}\\right)$$":[168],".":[169],"Finally,":[170],"demonstrate":[172],"usefulness":[174],"two":[179],"previously":[180],"studied":[181],"real":[182],"datasets:":[183],"first":[185],"our":[188],"method":[189],"can":[190,212],"be":[191],"used":[192],"confirm":[194],"or":[195],"raise":[196],"doubt":[197],"hypothetical":[199],"duplications":[201,216],"16":[206],"eukaryotes,":[207],"then":[208],"how":[210],"detect":[213],"whole":[214],"genome":[215],"in":[217],"yeast":[218],"genomes.":[219]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":2}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
