{"id":"https://openalex.org/W2883371511","doi":"https://doi.org/10.1186/s13015-018-0130-7","title":"Split-inducing indels in phylogenomic analysis","display_name":"Split-inducing indels in phylogenomic analysis","publication_year":2018,"publication_date":"2018-07-16","ids":{"openalex":"https://openalex.org/W2883371511","doi":"https://doi.org/10.1186/s13015-018-0130-7","mag":"2883371511","pmid":"https://pubmed.ncbi.nlm.nih.gov/30026791"},"language":"en","primary_location":{"id":"doi:10.1186/s13015-018-0130-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13015-018-0130-7","pdf_url":"https://almob.biomedcentral.com/track/pdf/10.1186/s13015-018-0130-7","source":{"id":"https://openalex.org/S205663195","display_name":"Algorithms for Molecular Biology","issn_l":"1748-7188","issn":["1748-7188"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for Molecular Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://almob.biomedcentral.com/track/pdf/10.1186/s13015-018-0130-7","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5061236888","display_name":"Alexander Donath","orcid":"https://orcid.org/0000-0001-5618-0547"},"institutions":[{"id":"https://openalex.org/I4210099549","display_name":"Zoological Research Museum Alexander Koenig","ror":"https://ror.org/00wz4b049","country_code":"DE","type":"archive","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210099549"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Alexander Donath","raw_affiliation_strings":["1Center for Molecular Biodiversity Research (zmb), Zoological Research Museum Alexander Koenig (ZFMK), Adenauerallee 160, 53113 Bonn, Germany","Center for Molecular Biodiversity Research (zmb), Zoological Research Museum Alexander Koenig (ZFMK), Adenauerallee 160, 53113, Bonn, Germany"],"affiliations":[{"raw_affiliation_string":"1Center for Molecular Biodiversity Research (zmb), Zoological Research Museum Alexander Koenig (ZFMK), Adenauerallee 160, 53113 Bonn, Germany","institution_ids":["https://openalex.org/I4210099549"]},{"raw_affiliation_string":"Center for Molecular Biodiversity Research (zmb), Zoological Research Museum Alexander Koenig (ZFMK), Adenauerallee 160, 53113, Bonn, Germany","institution_ids":["https://openalex.org/I4210099549"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016104736","display_name":"Peter F. Stadler","orcid":"https://orcid.org/0000-0002-5016-5191"},"institutions":[{"id":"https://openalex.org/I129774422","display_name":"University of Vienna","ror":"https://ror.org/03prydq77","country_code":"AT","type":"education","lineage":["https://openalex.org/I129774422"]},{"id":"https://openalex.org/I1308548392","display_name":"Santa Fe Institute","ror":"https://ror.org/01arysc35","country_code":"US","type":"funder","lineage":["https://openalex.org/I1308548392"]},{"id":"https://openalex.org/I180519160","display_name":"Copenhagen Business School","ror":"https://ror.org/04sppb023","country_code":"DK","type":"education","lineage":["https://openalex.org/I180519160"]},{"id":"https://openalex.org/I2801030728","display_name":"German Centre for Integrative Biodiversity Research","ror":"https://ror.org/01jty7g66","country_code":"DE","type":"facility","lineage":["https://openalex.org/I2801030728"]},{"id":"https://openalex.org/I40900055","display_name":"Telstra (Australia)","ror":"https://ror.org/04g047260","country_code":"AU","type":"company","lineage":["https://openalex.org/I40900055"]},{"id":"https://openalex.org/I4210091327","display_name":"Max Planck Institute for Mathematics in the Sciences","ror":"https://ror.org/00ez2he07","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210091327"]},{"id":"https://openalex.org/I4210119712","display_name":"Max Planck Institute for Mathematics","ror":"https://ror.org/02dh8ja68","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210119712"]},{"id":"https://openalex.org/I4210145647","display_name":"Fraunhofer Institute for Cell Therapy and Immunology","ror":"https://ror.org/04x45f476","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210145647","https://openalex.org/I4923324"]},{"id":"https://openalex.org/I926574661","display_name":"Leipzig University","ror":"https://ror.org/03s7gtk40","country_code":"DE","type":"education","lineage":["https://openalex.org/I926574661"]}],"countries":["AT","AU","DE","DK","US"],"is_corresponding":false,"raw_author_name":"Peter F. Stadler","raw_affiliation_strings":["2Bioinformatics Group, Department of Computer Science, Interdisciplinary Center for Bioinformatics, Universit\u00e4t Leipzig, H\u00e4rtelstra\u00dfe 16-18, 04107 Leipzig, Germany","3Competence Center for Scalable Data Services and Solutions Dresden/Leipzig, German Centre for Integrative Biodiversity Research (iDiv), and Leipzig Research Center for Civilization Diseases, Universit\u00e4t Leipzig, H\u00e4rtelstra\u00dfe 16-18, 04107 Leipzig, Germany","4Max Planck Institute for Mathematics in the Sciences, Inselstra\u00dfe 22, 04103 Leipzig, Germany","5Fraunhofer Institute for Cell Therapy and Immunology, Perlickstra\u00dfe 1, 04103 Leipzig, Germany","6Department of Theoretical Chemistry, University of Vienna, W\u00e4hringer Stra\u00dfe 17, 1090 Vienna, Austria","8Santa Fe Institute, 1399 Hyde Park Rd., Santa Fe, NM87501 USA","Center for non-coding RNA in Technology and Health, Gr\u00f8neg\u00e5rdsvej 3, 1870 Frederiksberg C, Denmark","Bioinformatics Group, Department of Computer Science, Interdisciplinary Center for Bioinformatics, Universit\u00e4t Leipzig, H\u00e4rtelstra\u00dfe 16\u201318, 04107, Leipzig, Germany"],"affiliations":[{"raw_affiliation_string":"2Bioinformatics Group, Department of Computer Science, Interdisciplinary Center for Bioinformatics, Universit\u00e4t Leipzig, H\u00e4rtelstra\u00dfe 16-18, 04107 Leipzig, Germany","institution_ids":["https://openalex.org/I40900055","https://openalex.org/I926574661"]},{"raw_affiliation_string":"3Competence Center for Scalable Data Services and Solutions Dresden/Leipzig, German Centre for Integrative Biodiversity Research (iDiv), and Leipzig Research Center for Civilization Diseases, Universit\u00e4t Leipzig, H\u00e4rtelstra\u00dfe 16-18, 04107 Leipzig, Germany","institution_ids":["https://openalex.org/I2801030728"]},{"raw_affiliation_string":"4Max Planck Institute for Mathematics in the Sciences, Inselstra\u00dfe 22, 04103 Leipzig, Germany","institution_ids":["https://openalex.org/I4210119712","https://openalex.org/I4210091327"]},{"raw_affiliation_string":"5Fraunhofer Institute for Cell Therapy and Immunology, Perlickstra\u00dfe 1, 04103 Leipzig, Germany","institution_ids":["https://openalex.org/I4210145647"]},{"raw_affiliation_string":"6Department of Theoretical Chemistry, University of Vienna, W\u00e4hringer Stra\u00dfe 17, 1090 Vienna, Austria","institution_ids":["https://openalex.org/I129774422"]},{"raw_affiliation_string":"8Santa Fe Institute, 1399 Hyde Park Rd., Santa Fe, NM87501 USA","institution_ids":["https://openalex.org/I1308548392"]},{"raw_affiliation_string":"Center for non-coding RNA in Technology and Health, Gr\u00f8neg\u00e5rdsvej 3, 1870 Frederiksberg C, Denmark","institution_ids":["https://openalex.org/I180519160"]},{"raw_affiliation_string":"Bioinformatics Group, Department of Computer Science, Interdisciplinary Center for Bioinformatics, Universit\u00e4t Leipzig, H\u00e4rtelstra\u00dfe 16\u201318, 04107, Leipzig, Germany","institution_ids":["https://openalex.org/I926574661"]}]}],"institutions":[],"countries_distinct_count":5,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5061236888"],"corresponding_institution_ids":["https://openalex.org/I4210099549"],"apc_list":{"value":1490,"currency":"GBP","value_usd":1827},"apc_paid":{"value":1661,"currency":"EUR","value_usd":1791},"fwci":0.7447,"has_fulltext":true,"cited_by_count":17,"citation_normalized_percentile":{"value":0.70559243,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"13","issue":"1","first_page":"12","last_page":"12"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9829999804496765,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.9764999747276306,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/indel","display_name":"Indel","score":0.8348070979118347},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.8035120368003845},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.6655007600784302},{"id":"https://openalex.org/keywords/coalescent-theory","display_name":"Coalescent theory","score":0.587649405002594},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5229461789131165},{"id":"https://openalex.org/keywords/multiple-sequence-alignment","display_name":"Multiple sequence alignment","score":0.5149930119514465},{"id":"https://openalex.org/keywords/phylogenomics","display_name":"Phylogenomics","score":0.49704673886299133},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.458651065826416},{"id":"https://openalex.org/keywords/phylogenetics","display_name":"Phylogenetics","score":0.4508030116558075},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.44581061601638794},{"id":"https://openalex.org/keywords/data-set","display_name":"Data set","score":0.4405778646469116},{"id":"https://openalex.org/keywords/taxon","display_name":"Taxon","score":0.4211830496788025},{"id":"https://openalex.org/keywords/phylogenetic-network","display_name":"Phylogenetic network","score":0.4102693200111389},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4073845148086548},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3822517991065979},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.359142005443573},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.34010645747184753},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.32037949562072754},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2833857536315918},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.15393924713134766},{"id":"https://openalex.org/keywords/clade","display_name":"Clade","score":0.1434851586818695},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1043262779712677},{"id":"https://openalex.org/keywords/paleontology","display_name":"Paleontology","score":0.09896087646484375}],"concepts":[{"id":"https://openalex.org/C119054055","wikidata":"https://www.wikidata.org/wiki/Q1576681","display_name":"Indel","level":5,"score":0.8348070979118347},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.8035120368003845},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.6655007600784302},{"id":"https://openalex.org/C2554327","wikidata":"https://www.wikidata.org/wiki/Q2698599","display_name":"Coalescent theory","level":4,"score":0.587649405002594},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5229461789131165},{"id":"https://openalex.org/C88031987","wikidata":"https://www.wikidata.org/wiki/Q1377767","display_name":"Multiple sequence alignment","level":5,"score":0.5149930119514465},{"id":"https://openalex.org/C70343354","wikidata":"https://www.wikidata.org/wiki/Q3381973","display_name":"Phylogenomics","level":5,"score":0.49704673886299133},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.458651065826416},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.4508030116558075},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.44581061601638794},{"id":"https://openalex.org/C58489278","wikidata":"https://www.wikidata.org/wiki/Q1172284","display_name":"Data set","level":2,"score":0.4405778646469116},{"id":"https://openalex.org/C71640776","wikidata":"https://www.wikidata.org/wiki/Q16521","display_name":"Taxon","level":2,"score":0.4211830496788025},{"id":"https://openalex.org/C26619641","wikidata":"https://www.wikidata.org/wiki/Q3142246","display_name":"Phylogenetic network","level":4,"score":0.4102693200111389},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4073845148086548},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3822517991065979},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.359142005443573},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.34010645747184753},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.32037949562072754},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2833857536315918},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.15393924713134766},{"id":"https://openalex.org/C44465124","wikidata":"https://www.wikidata.org/wiki/Q713623","display_name":"Clade","level":4,"score":0.1434851586818695},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1043262779712677},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.09896087646484375},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.0},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.0},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":8,"locations":[{"id":"doi:10.1186/s13015-018-0130-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13015-018-0130-7","pdf_url":"https://almob.biomedcentral.com/track/pdf/10.1186/s13015-018-0130-7","source":{"id":"https://openalex.org/S205663195","display_name":"Algorithms for Molecular Biology","issn_l":"1748-7188","issn":["1748-7188"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for Molecular Biology","raw_type":"journal-article"},{"id":"pmid:30026791","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30026791","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for molecular biology : AMB","raw_type":null},{"id":"pmh:info:fedora/oai:univie.ac.at:o:1030344","is_oa":true,"landing_page_url":"https://phaidra.univie.ac.at/o:1030344","pdf_url":null,"source":{"id":"https://openalex.org/S4306401993","display_name":"Phaidra (Universit\u00e4t Wien)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I129774422","host_organization_name":"University of Vienna","host_organization_lineage":["https://openalex.org/I129774422"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN:1748-7188","raw_type":"article"},{"id":"pmh:oai:doaj.org/article:1db371a7643540d49a8ec2283b620e5e","is_oa":true,"landing_page_url":"https://doaj.org/article/1db371a7643540d49a8ec2283b620e5e","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Algorithms for Molecular Biology, Vol 13, Iss 1, Pp 1-12 (2018)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5005977","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6047143","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:fraunhofer.de:N-504108","is_oa":true,"landing_page_url":"http://publica.fraunhofer.de/documents/N-504108.html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400801","display_name":"Publikationsdatenbank der Fraunhofer-Gesellschaft (Fraunhofer-Gesellschaft)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4923324","host_organization_name":"Fraunhofer-Gesellschaft","host_organization_lineage":["https://openalex.org/I4923324"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Fraunhofer IZI","raw_type":"Journal Article"},{"id":"pmh:oai:publica.fraunhofer.de:publica/253567","is_oa":false,"landing_page_url":"https://publica.fraunhofer.de/handle/publica/253567","pdf_url":null,"source":{"id":"https://openalex.org/S4306400318","display_name":"Fraunhofer-Publica (Fraunhofer-Gesellschaft)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4923324","host_organization_name":"Fraunhofer-Gesellschaft","host_organization_lineage":["https://openalex.org/I4923324"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"},{"id":"pmh:oai:pure.mpg.de:item_3056243","is_oa":false,"landing_page_url":"http://hdl.handle.net/21.11116/0000-0003-A6B9-1","pdf_url":null,"source":{"id":"https://openalex.org/S4306400654","display_name":"MPG.PuRe (Max Planck Society)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149899117","host_organization_name":"Max Planck Society","host_organization_lineage":["https://openalex.org/I149899117"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Algorithms for molecular biology","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1186/s13015-018-0130-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13015-018-0130-7","pdf_url":"https://almob.biomedcentral.com/track/pdf/10.1186/s13015-018-0130-7","source":{"id":"https://openalex.org/S205663195","display_name":"Algorithms for Molecular Biology","issn_l":"1748-7188","issn":["1748-7188"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for Molecular Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G762232396","display_name":null,"funder_award_id":"Project","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G950895324","display_name":null,"funder_award_id":"STA 850/2","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320321613","display_name":"Technische Universit\u00e4t Dresden","ror":"https://ror.org/042aqky30"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2883371511.pdf","grobid_xml":"https://content.openalex.org/works/W2883371511.grobid-xml"},"referenced_works_count":71,"referenced_works":["https://openalex.org/W1810497223","https://openalex.org/W1872483787","https://openalex.org/W1965403600","https://openalex.org/W1977694535","https://openalex.org/W1982032672","https://openalex.org/W1984814148","https://openalex.org/W1985978806","https://openalex.org/W1995181701","https://openalex.org/W1995318306","https://openalex.org/W1997655974","https://openalex.org/W1999707793","https://openalex.org/W2013298312","https://openalex.org/W2015365367","https://openalex.org/W2019216543","https://openalex.org/W2019860976","https://openalex.org/W2021563725","https://openalex.org/W2023408190","https://openalex.org/W2043257286","https://openalex.org/W2044281191","https://openalex.org/W2044468848","https://openalex.org/W2051254500","https://openalex.org/W2058494629","https://openalex.org/W2059917021","https://openalex.org/W2060425093","https://openalex.org/W2067150932","https://openalex.org/W2074478801","https://openalex.org/W2078210212","https://openalex.org/W2085448729","https://openalex.org/W2090748603","https://openalex.org/W2097647731","https://openalex.org/W2100983360","https://openalex.org/W2101072339","https://openalex.org/W2102304447","https://openalex.org/W2102424972","https://openalex.org/W2102502076","https://openalex.org/W2103130355","https://openalex.org/W2107237710","https://openalex.org/W2109875270","https://openalex.org/W2110263284","https://openalex.org/W2112132489","https://openalex.org/W2114055146","https://openalex.org/W2114787995","https://openalex.org/W2115031948","https://openalex.org/W2117884309","https://openalex.org/W2122035121","https://openalex.org/W2123019209","https://openalex.org/W2127164334","https://openalex.org/W2127688908","https://openalex.org/W2129711736","https://openalex.org/W2132926880","https://openalex.org/W2137015675","https://openalex.org/W2140872496","https://openalex.org/W2141052558","https://openalex.org/W2143357251","https://openalex.org/W2144362290","https://openalex.org/W2145191876","https://openalex.org/W2146222452","https://openalex.org/W2150413224","https://openalex.org/W2150941095","https://openalex.org/W2153800802","https://openalex.org/W2155622507","https://openalex.org/W2157309486","https://openalex.org/W2157552136","https://openalex.org/W2160708989","https://openalex.org/W2160822746","https://openalex.org/W2161540422","https://openalex.org/W2164863064","https://openalex.org/W2166825456","https://openalex.org/W2171189056","https://openalex.org/W2563535234","https://openalex.org/W2581259096"],"related_works":["https://openalex.org/W2949862350","https://openalex.org/W2923769746","https://openalex.org/W2044364290","https://openalex.org/W2949365684","https://openalex.org/W2896511299","https://openalex.org/W4247744373","https://openalex.org/W4390897414","https://openalex.org/W2345610960","https://openalex.org/W2100983360","https://openalex.org/W3150126673"],"abstract_inverted_index":{"Suitably":[0],"processed":[1],"gap":[2],"patterns":[3],"extracted":[4],"from":[5],"genome-wide":[6],"alignment":[7],"provide":[8],"a":[9],"surprisingly":[10],"clear":[11],"phylogenetic":[12,21],"signal":[13],"and":[14],"an":[15],"allow":[16],"the":[17],"inference":[18],"of":[19],"accurate":[20],"trees.":[22]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":3},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":3}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
