{"id":"https://openalex.org/W2082505684","doi":"https://doi.org/10.1186/s13015-015-0040-x","title":"Sorting signed permutations by short operations","display_name":"Sorting signed permutations by short operations","publication_year":2015,"publication_date":"2015-03-24","ids":{"openalex":"https://openalex.org/W2082505684","doi":"https://doi.org/10.1186/s13015-015-0040-x","mag":"2082505684","pmid":"https://pubmed.ncbi.nlm.nih.gov/25838839"},"language":"en","primary_location":{"id":"doi:10.1186/s13015-015-0040-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13015-015-0040-x","pdf_url":"https://almob.biomedcentral.com/counter/pdf/10.1186/s13015-015-0040-x","source":{"id":"https://openalex.org/S205663195","display_name":"Algorithms for Molecular Biology","issn_l":"1748-7188","issn":["1748-7188"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for Molecular Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://almob.biomedcentral.com/counter/pdf/10.1186/s13015-015-0040-x","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5047066921","display_name":"Gustavo Rodrigues Galv\u00e3o","orcid":"https://orcid.org/0000-0001-6069-1147"},"institutions":[{"id":"https://openalex.org/I181391015","display_name":"Universidade Estadual de Campinas (UNICAMP)","ror":"https://ror.org/04wffgt70","country_code":"BR","type":"education","lineage":["https://openalex.org/I181391015"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"Gustavo Rodrigues Galv\u00e3o","raw_affiliation_strings":["Institute of Computing, University of Campinas, Av. Albert Einstein, 1251, Campinas, 13083-852 Brazil","Institute of Computing,  University of Campinas, Campinas, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Computing, University of Campinas, Av. Albert Einstein, 1251, Campinas, 13083-852 Brazil","institution_ids":["https://openalex.org/I181391015"]},{"raw_affiliation_string":"Institute of Computing,  University of Campinas, Campinas, Brazil","institution_ids":["https://openalex.org/I181391015"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072743877","display_name":"Orlando Lee","orcid":"https://orcid.org/0000-0003-4462-3325"},"institutions":[{"id":"https://openalex.org/I181391015","display_name":"Universidade Estadual de Campinas (UNICAMP)","ror":"https://ror.org/04wffgt70","country_code":"BR","type":"education","lineage":["https://openalex.org/I181391015"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Orlando Lee","raw_affiliation_strings":["Institute of Computing, University of Campinas, Av. Albert Einstein, 1251, Campinas, 13083-852 Brazil","Institute of Computing,  University of Campinas, Campinas, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Computing, University of Campinas, Av. Albert Einstein, 1251, Campinas, 13083-852 Brazil","institution_ids":["https://openalex.org/I181391015"]},{"raw_affiliation_string":"Institute of Computing,  University of Campinas, Campinas, Brazil","institution_ids":["https://openalex.org/I181391015"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042140271","display_name":"Zanoni Dias","orcid":"https://orcid.org/0000-0003-3333-6822"},"institutions":[{"id":"https://openalex.org/I181391015","display_name":"Universidade Estadual de Campinas (UNICAMP)","ror":"https://ror.org/04wffgt70","country_code":"BR","type":"education","lineage":["https://openalex.org/I181391015"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Zanoni Dias","raw_affiliation_strings":["Institute of Computing, University of Campinas, Av. Albert Einstein, 1251, Campinas, 13083-852 Brazil","Institute of Computing,  University of Campinas, Campinas, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Computing, University of Campinas, Av. Albert Einstein, 1251, Campinas, 13083-852 Brazil","institution_ids":["https://openalex.org/I181391015"]},{"raw_affiliation_string":"Institute of Computing,  University of Campinas, Campinas, Brazil","institution_ids":["https://openalex.org/I181391015"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5047066921"],"corresponding_institution_ids":["https://openalex.org/I181391015"],"apc_list":{"value":2290,"currency":"USD","value_usd":2290},"apc_paid":{"value":2290,"currency":"USD","value_usd":2290},"fwci":1.7966,"has_fulltext":true,"cited_by_count":19,"citation_normalized_percentile":{"value":0.85983264,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"10","issue":"1","first_page":"12","last_page":"12"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.00039999998989515007,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10948","display_name":"Advanced Combinatorial Mathematics","score":0.00019999999494757503,"subfield":{"id":"https://openalex.org/subfields/2607","display_name":"Discrete Mathematics and Combinatorics"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sorting","display_name":"Sorting","score":0.759109616279602},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7095219492912292},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3371315002441406},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.27607545256614685}],"concepts":[{"id":"https://openalex.org/C111696304","wikidata":"https://www.wikidata.org/wiki/Q2303697","display_name":"Sorting","level":2,"score":0.759109616279602},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7095219492912292},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3371315002441406},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.27607545256614685}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1186/s13015-015-0040-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13015-015-0040-x","pdf_url":"https://almob.biomedcentral.com/counter/pdf/10.1186/s13015-015-0040-x","source":{"id":"https://openalex.org/S205663195","display_name":"Algorithms for Molecular Biology","issn_l":"1748-7188","issn":["1748-7188"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for Molecular Biology","raw_type":"journal-article"},{"id":"pmid:25838839","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25838839","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for molecular biology : AMB","raw_type":null},{"id":"pmh:oai:repositorio.unicamp.br:REPOSIP/243006","is_oa":true,"landing_page_url":"http://repositorio.unicamp.br/jspui/handle/REPOSIP/243006","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"WOS","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:europepmc.org:3348833","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4383228","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:americanae.aecid.es:2837176","is_oa":true,"landing_page_url":"http://almob.biomedcentral.com/articles/10.1186/s13015-015-0040-x","pdf_url":null,"source":{"id":"https://openalex.org/S4306400786","display_name":"Americanae (AECID Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"WOS","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"doi:10.1186/s13015-015-0040-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13015-015-0040-x","pdf_url":"https://almob.biomedcentral.com/counter/pdf/10.1186/s13015-015-0040-x","source":{"id":"https://openalex.org/S205663195","display_name":"Algorithms for Molecular Biology","issn_l":"1748-7188","issn":["1748-7188"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for Molecular Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1127590115","display_name":null,"funder_award_id":"2013/08293-7","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"},{"id":"https://openalex.org/G1185587483","display_name":null,"funder_award_id":"477692/ 2012-5","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G1263407861","display_name":null,"funder_award_id":"306730/2012-0","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G187716650","display_name":null,"funder_award_id":"2013/08293 - 7","funder_id":"https://openalex.org/F4320320997","funder_display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo"},{"id":"https://openalex.org/G237172224","display_name":null,"funder_award_id":"-0 and","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G3534718230","display_name":null,"funder_award_id":"483370/2013-4","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G3572101131","display_name":null,"funder_award_id":"2014/","funder_id":"https://openalex.org/F4320320997","funder_display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo"},{"id":"https://openalex.org/G5833551864","display_name":null,"funder_award_id":"2012-5","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G6527665788","display_name":null,"funder_award_id":"2013-4","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G7191816673","display_name":null,"funder_award_id":"303947/2008-0","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G7947704863","display_name":null,"funder_award_id":"2013/08293-7","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G8363156338","display_name":"CCES - Center for Computational Engineering and Sciences","funder_award_id":"13/08293-7","funder_id":"https://openalex.org/F4320320997","funder_display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo"},{"id":"https://openalex.org/G8502020132","display_name":null,"funder_award_id":"306730/2012-0, 477692/2012-5, and 483370/2013-4","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"}],"funders":[{"id":"https://openalex.org/F4320320997","display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo","ror":"https://ror.org/02ddkpn78"},{"id":"https://openalex.org/F4320321091","display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior","ror":"https://ror.org/00x0ma614"},{"id":"https://openalex.org/F4320322025","display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico","ror":"https://ror.org/03swz6y49"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2082505684.pdf","grobid_xml":"https://content.openalex.org/works/W2082505684.grobid-xml"},"referenced_works_count":39,"referenced_works":["https://openalex.org/W74509308","https://openalex.org/W1530821781","https://openalex.org/W1536222765","https://openalex.org/W1580177652","https://openalex.org/W1966872307","https://openalex.org/W1973005012","https://openalex.org/W1980815056","https://openalex.org/W1988577833","https://openalex.org/W1989978323","https://openalex.org/W1990676812","https://openalex.org/W1991909065","https://openalex.org/W1994093319","https://openalex.org/W1998730018","https://openalex.org/W2022060802","https://openalex.org/W2023749136","https://openalex.org/W2028889910","https://openalex.org/W2037187792","https://openalex.org/W2054344911","https://openalex.org/W2066602736","https://openalex.org/W2070642495","https://openalex.org/W2072229071","https://openalex.org/W2093342565","https://openalex.org/W2097706568","https://openalex.org/W2103333868","https://openalex.org/W2103849916","https://openalex.org/W2107383419","https://openalex.org/W2108998942","https://openalex.org/W2124327944","https://openalex.org/W2124862004","https://openalex.org/W2145175645","https://openalex.org/W2154617379","https://openalex.org/W2157622572","https://openalex.org/W2157761435","https://openalex.org/W2163195596","https://openalex.org/W2278556741","https://openalex.org/W2763373928","https://openalex.org/W3106450156","https://openalex.org/W4213205621","https://openalex.org/W6601326706"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2739612537","https://openalex.org/W2001405890"],"abstract_inverted_index":{"BACKGROUND:":[0],"During":[1],"evolution,":[2],"global":[3],"mutations":[4,19],"may":[5],"alter":[6],"the":[7,10,13,32,43,59,72,88,95,119,129,132,135,141,154,166,181,201,216,231,249,289,294,319,323,336,340],"order":[8,44],"and":[9,45,52,240,247,258,272,279],"orientation":[11,46],"of":[12,47,50,61,65,70,75,90,113,131,137,156,169,173,183,197,203,210,218,225,233,242,251,260,293,322,339],"genes":[14,138],"in":[15,106,118,153,165],"a":[16,48,66,92,100,111,185,205,220,235,253,274,280],"genome.":[17,67],"Such":[18],"are":[20,36,39,55,110,151,172],"referred":[21],"to":[22,87],"as":[23],"rearrangement":[24],"events,":[25],"or":[26],"simply":[27],"operations.":[28,190],"In":[29,176,331],"unichromosomal":[30],"genomes,":[31],"most":[33,213,228,245,263],"common":[34],"operations":[35,76,133,150,171],"reversals,":[37],"which":[38,54,84],"responsible":[40,56],"for":[41,57,269,276,282,302],"reversing":[42],"sequence":[49,74],"genes,":[51],"transpositions,":[53],"switching":[58],"location":[60],"two":[62],"contiguous":[63],"portions":[64],"The":[68],"problem":[69,89,102,117,164,182,202,217,232,250,277,283],"computing":[71],"minimum":[73],"that":[77,103,148,160,288,316,318,335],"transforms":[78],"one":[79],"genome":[80],"into":[81,94,127],"another":[82],"-":[83,98],"is":[85,99,297,343],"equivalent":[86],"sorting":[91,184,204,219,234,252],"permutation":[93,97,187,207,222,237,255],"identity":[96],"well-studied":[101],"finds":[104],"application":[105],"comparative":[107],"genomics.":[108],"There":[109],"number":[112,136],"works":[114],"concerning":[115],"this":[116,163,177,198,333],"literature,":[120],"but":[121],"they":[122],"generally":[123],"do":[124],"not":[125,298],"take":[126],"account":[128],"length":[130,211,226,243,261],"(i.e.":[134],"affected":[139],"by":[140,188,208,223,238,256],"operations).":[142],"Since":[143],"it":[144],"has":[145],"been":[146],"observed":[147],"short":[149,170,189],"prevalent":[152],"evolution":[155],"some":[157],"species,":[158],"algorithms":[159,325],"efficiently":[161],"solve":[162],"special":[167],"case":[168],"interest.":[174],"RESULTS:":[175],"paper,":[178],"we":[179,193,286,312],"investigate":[180],"signed":[186,206,221,236,254,304],"More":[191],"precisely,":[192],"study":[194],"four":[195],"flavors":[196],"problem:":[199],"(i)":[200,271],"reversals":[209,224,239,257],"at":[212,227,244,262],"2;":[214,246],"(ii)":[215],"3;":[229],"(iii)":[230],"transpositions":[241,259],"(iv)":[248],"3.":[264,330],"We":[265],"present":[266,313],"polynomial-time":[267],"solutions":[268],"problems":[270],"(iii),":[273],"5-approximation":[275,295],"(ii),":[278],"3-approximation":[281,341],"(iv).":[284],"Moreover,":[285],"show":[287,317],"expected":[290],"approximation":[291,320,324,337],"ratio":[292,338],"algorithm":[296,342],"greater":[299],"than":[300,308,329],"3":[301],"random":[303],"permutations":[305],"with":[306],"more":[307],"12":[309],"elements.":[310],"Finally,":[311],"experimental":[314],"results":[315],"ratios":[321],"cannot":[326],"be":[327],"smaller":[328],"particular,":[332],"means":[334],"tight.":[344]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":4},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":1}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
